Wall clock time and date at job start Mon Mar 30 2020 07:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50702 * 109.47296 * 2 1 4 4 O 1.34037 * 126.77546 * 270.11289 * 3 2 1 5 5 N 1.20924 * 111.56577 * 180.28969 * 4 3 2 6 6 C 1.30170 * 111.60213 * 359.75771 * 5 4 3 7 7 C 1.50702 * 126.80097 * 180.02562 * 6 5 4 8 8 C 1.35447 * 126.77447 * 89.99873 * 3 2 1 9 9 C 1.50699 * 128.01055 * 0.02562 * 8 3 2 10 10 O 1.45209 * 109.46944 * 269.70395 * 9 8 3 11 11 C 1.34228 * 116.99481 * 179.97438 * 10 9 8 12 12 O 1.20825 * 120.00238 * 359.97438 * 11 10 9 13 13 C 1.50703 * 119.99651 * 180.02562 * 11 10 9 14 14 H 1.09007 * 109.46998 * 300.00176 * 13 11 10 15 15 C 1.53000 * 109.47112 * 60.00053 * 13 11 10 16 16 C 1.50703 * 109.47303 * 180.02562 * 13 11 10 17 17 H 1.08005 * 119.99546 * 354.35808 * 16 13 11 18 18 C 1.37875 * 119.99901 * 174.35790 * 16 13 11 19 19 N 1.31512 * 119.99810 * 156.52530 * 18 16 13 20 20 Si 1.86798 * 120.00031 * 336.79394 * 18 16 13 21 21 H 1.48500 * 109.46862 * 179.72431 * 20 18 16 22 22 H 1.48495 * 109.47547 * 299.72815 * 20 18 16 23 23 H 1.48498 * 109.47018 * 59.73163 * 20 18 16 24 24 H 1.09001 * 109.47137 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47054 * 300.00259 * 1 2 3 26 26 H 1.09002 * 109.46981 * 60.00107 * 1 2 3 27 27 H 1.08996 * 109.47054 * 239.99741 * 2 1 3 28 28 H 1.08998 * 109.46501 * 119.99792 * 2 1 3 29 29 H 1.09009 * 109.46906 * 269.97297 * 7 6 5 30 30 H 1.09000 * 109.47116 * 29.96816 * 7 6 5 31 31 H 1.08995 * 109.47396 * 149.97350 * 7 6 5 32 32 H 1.08989 * 109.47127 * 149.70599 * 9 8 3 33 33 H 1.09000 * 109.46891 * 29.69751 * 9 8 3 34 34 H 1.08996 * 109.47246 * 53.11494 * 15 13 11 35 35 H 1.09003 * 109.46967 * 173.11539 * 15 13 11 36 36 H 1.09007 * 109.46955 * 293.10768 * 15 13 11 37 37 H 0.97006 * 120.00067 * 355.20971 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0325 1.4208 0.0000 4 8 2.2980 2.1781 -1.0736 5 7 2.6929 3.2761 -0.7564 6 6 2.7431 3.4121 0.5372 7 6 3.1828 4.6352 1.3000 8 6 2.3028 2.1853 1.0849 9 6 2.1714 1.8123 2.5391 10 8 0.8406 2.1548 3.0083 11 6 0.5589 1.8843 4.2925 12 8 1.3964 1.3777 5.0009 13 6 -0.8023 2.2115 4.8504 14 1 -0.9838 3.2826 4.7609 15 6 -1.8715 1.4460 4.0683 16 6 -0.8592 1.8124 6.3025 17 1 -0.0303 1.2844 6.7503 18 6 -1.9696 2.1214 7.0593 19 7 -2.2482 1.4185 8.1353 20 14 -3.0822 3.5335 6.5520 21 1 -4.2011 3.6546 7.5208 22 1 -2.3023 4.7971 6.5360 23 1 -3.6278 3.2713 5.1960 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 4.2561 4.5826 1.4833 30 1 2.9572 5.5278 0.7166 31 1 2.6534 4.6797 2.2517 32 1 2.9136 2.3570 3.1224 33 1 2.3329 0.7406 2.6553 34 1 -1.6221 0.3850 4.0551 35 1 -2.8410 1.5855 4.5465 36 1 -1.9130 1.8222 3.0461 37 1 -1.7136 0.6404 8.3584 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000922857225.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:49:33 Heat of formation + Delta-G solvation = -65.324036 kcal Electronic energy + Delta-G solvation = -20613.551046 eV Core-core repulsion = 17358.181609 eV Total energy + Delta-G solvation = -3255.369437 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -46.07742 -41.44373 -37.90703 -36.14280 -35.95086 -35.60481 -33.31432 -31.68372 -29.80307 -28.58649 -26.87296 -25.03660 -24.75293 -22.80144 -21.50407 -21.01188 -19.55862 -18.83044 -18.33958 -18.30985 -17.37786 -17.14295 -15.97789 -15.62541 -15.36695 -14.92688 -14.67664 -14.47402 -14.31772 -14.08399 -13.90696 -13.82862 -13.64488 -13.41083 -13.17166 -13.04675 -12.54212 -12.42310 -12.35442 -12.08080 -11.86601 -11.69139 -11.65037 -11.29524 -11.10160 -10.94138 -10.42830 -10.35655 -8.82399 -6.39954 0.25396 0.87573 1.34149 1.51783 1.58195 1.76591 1.90026 2.12963 2.51788 2.99600 3.05853 3.33988 3.55060 3.77954 4.03941 4.13536 4.19379 4.27071 4.32396 4.41202 4.48745 4.55981 4.58042 4.63195 4.71129 4.84537 4.86763 4.97600 5.06281 5.08908 5.11445 5.32195 5.36192 5.47758 5.78070 6.04906 6.56824 6.95530 7.14553 7.35944 8.57088 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.025082 B = 0.004981 C = 0.004733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.079510 B = 5619.528048 C = 5914.586736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.047 4.047 3 C 0.015 3.985 4 O 0.093 5.907 5 N -0.389 5.389 6 C 0.035 3.965 7 C -0.081 4.081 8 C -0.227 4.227 9 C 0.144 3.856 10 O -0.353 6.353 11 C 0.480 3.520 12 O -0.542 6.542 13 C 0.025 3.975 14 H 0.073 0.927 15 C -0.132 4.132 16 C -0.616 4.616 17 H 0.026 0.974 18 C -0.005 4.005 19 N -0.922 5.922 20 Si 1.073 2.927 21 H -0.287 1.287 22 H -0.263 1.263 23 H -0.232 1.232 24 H 0.089 0.911 25 H 0.045 0.955 26 H 0.063 0.937 27 H 0.118 0.882 28 H 0.103 0.897 29 H 0.098 0.902 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.041 0.959 35 H 0.060 0.940 36 H 0.073 0.927 37 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.350 1.160 -19.482 20.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.085 4.085 3 C -0.049 4.049 4 O 0.033 5.967 5 N -0.098 5.098 6 C -0.124 4.124 7 C -0.138 4.138 8 C -0.231 4.231 9 C 0.070 3.930 10 O -0.270 6.270 11 C 0.325 3.675 12 O -0.431 6.431 13 C 0.006 3.994 14 H 0.091 0.909 15 C -0.190 4.190 16 C -0.653 4.653 17 H 0.044 0.956 18 C -0.205 4.205 19 N -0.556 5.556 20 Si 0.892 3.108 21 H -0.212 1.212 22 H -0.188 1.188 23 H -0.156 1.156 24 H 0.108 0.892 25 H 0.064 0.936 26 H 0.083 0.917 27 H 0.137 0.863 28 H 0.121 0.879 29 H 0.117 0.883 30 H 0.107 0.893 31 H 0.101 0.899 32 H 0.100 0.900 33 H 0.104 0.896 34 H 0.060 0.940 35 H 0.079 0.921 36 H 0.091 0.909 37 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 5.599 2.633 -19.884 20.824 hybrid contribution 1.804 -1.524 1.046 2.582 sum 7.403 1.109 -18.837 20.270 Atomic orbital electron populations 1.21803 0.92777 1.03935 1.02374 1.20429 0.97176 0.84444 1.06401 1.24921 0.97270 0.97676 0.85028 1.84787 1.61406 1.17621 1.32931 1.73835 1.19287 1.00398 1.16303 1.23872 1.00314 0.98281 0.89975 1.20338 1.02965 0.91506 0.99000 1.20514 1.11679 0.95328 0.95584 1.20868 0.82495 1.01377 0.88261 1.86622 1.35069 1.76776 1.28546 1.24459 0.91081 0.73283 0.78688 1.90527 1.50328 1.41775 1.60423 1.19021 0.86418 0.99187 0.94817 0.90930 1.21959 0.98275 0.99550 0.99195 1.21919 1.05110 1.42796 0.95511 0.95565 1.27225 0.98117 1.01722 0.93434 1.70974 1.38715 1.16705 1.29173 0.83746 0.75129 0.73786 0.78185 1.21235 1.18827 1.15576 0.89223 0.93560 0.91740 0.86339 0.87882 0.88330 0.89347 0.89916 0.90003 0.89567 0.93951 0.92069 0.90853 0.93680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 9.90 71.98 0.71 -1.79 16 2 C -0.05 -0.73 6.35 29.85 0.19 -0.54 16 3 C 0.02 0.34 6.74 25.04 0.17 0.51 16 4 O 0.09 2.30 11.20 71.66 0.80 3.10 16 5 N -0.39 -10.59 12.07 -49.57 -0.60 -11.19 16 6 C 0.03 0.90 7.33 43.58 0.32 1.22 16 7 C -0.08 -1.63 10.39 71.24 0.74 -0.89 16 8 C -0.23 -5.87 5.96 -19.74 -0.12 -5.99 16 9 C 0.14 4.16 5.79 71.24 0.41 4.57 16 10 O -0.35 -12.40 10.13 -51.39 -0.52 -12.92 16 11 C 0.48 20.89 7.24 71.24 0.52 21.41 16 12 O -0.54 -27.13 15.22 21.97 0.33 -26.80 16 13 C 0.03 1.15 2.34 -12.28 -0.03 1.12 16 14 H 0.07 3.08 6.71 -2.38 -0.02 3.06 16 15 C -0.13 -5.16 8.85 71.98 0.64 -4.52 16 16 C -0.62 -35.07 8.57 25.60 0.22 -34.85 16 17 H 0.03 1.72 7.02 -2.91 -0.02 1.70 16 18 C -0.01 -0.28 5.19 84.65 0.44 0.16 16 19 N -0.92 -56.70 13.70 21.45 0.29 -56.40 16 20 Si 1.07 46.33 26.45 68.60 1.81 48.15 16 21 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 22 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 23 H -0.23 -8.49 6.15 99.48 0.61 -7.88 16 24 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.10 1.53 7.43 -2.39 -0.02 1.51 16 29 H 0.10 1.62 8.14 -2.38 -0.02 1.60 16 30 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.08 2.33 8.13 -2.39 -0.02 2.31 16 33 H 0.09 2.35 7.43 -2.39 -0.02 2.34 16 34 H 0.04 1.66 8.13 -2.39 -0.02 1.64 16 35 H 0.06 2.42 5.48 -2.39 -0.01 2.41 16 36 H 0.07 2.33 8.14 -2.38 -0.02 2.31 16 37 H 0.25 16.07 8.73 -92.70 -0.81 15.26 16 Total: -1.00 -70.88 317.99 7.27 -63.61 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: 0.94 Total: 12.05 kcal Atomic # 6 Polarization: -23.80 SS G_CDS: 4.21 Total: -19.59 kcal Atomic # 7 Polarization: -67.29 SS G_CDS: -0.30 Total: -67.59 kcal Atomic # 8 Polarization: -37.24 SS G_CDS: 0.62 Total: -36.62 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 1.81 Total: 48.15 kcal Total: -70.88 7.27 -63.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922857225.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.716 kcal (2) G-P(sol) polarization free energy of solvation -70.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds