Wall clock time and date at job start Mon Mar 30 2020 07:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46900 * 111.00433 * 2 1 4 4 C 1.50695 * 109.47441 * 179.97438 * 3 2 1 5 5 C 1.38252 * 119.96150 * 260.02260 * 4 3 2 6 6 C 1.38131 * 120.08124 * 179.97438 * 5 4 3 7 7 C 1.38771 * 119.99405 * 0.02562 * 6 5 4 8 8 O 1.35901 * 120.04018 * 179.97438 * 7 6 5 9 9 C 1.42898 * 117.00081 * 180.02562 * 8 7 6 10 10 C 1.53000 * 109.47073 * 180.02562 * 9 8 7 11 11 C 1.53002 * 109.47075 * 179.97438 * 10 9 8 12 12 C 1.50694 * 109.47376 * 179.97438 * 11 10 9 13 13 H 1.08006 * 119.99927 * 359.97438 * 12 11 10 14 14 C 1.37876 * 120.00249 * 180.02562 * 12 11 10 15 15 N 1.31515 * 119.99727 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99988 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47031 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47051 * 119.99971 * 16 14 12 19 19 H 1.48504 * 109.46752 * 239.99605 * 16 14 12 20 20 C 1.38665 * 119.91642 * 359.74633 * 7 6 5 21 21 C 1.38390 * 119.91770 * 0.48367 * 20 7 6 22 22 F 1.35104 * 119.99478 * 179.78958 * 21 20 7 23 23 H 1.08997 * 109.47289 * 60.00262 * 1 2 3 24 24 H 1.09002 * 109.46942 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46700 * 299.99824 * 1 2 3 26 26 H 1.00904 * 111.00315 * 123.95644 * 2 1 3 27 27 H 1.09000 * 109.47019 * 59.99890 * 3 2 1 28 28 H 1.08997 * 109.46755 * 300.00255 * 3 2 1 29 29 H 1.08001 * 119.95677 * 359.97438 * 5 4 3 30 30 H 1.07997 * 119.99893 * 180.02562 * 6 5 4 31 31 H 1.09007 * 109.46920 * 299.99949 * 9 8 7 32 32 H 1.09000 * 109.47365 * 59.99648 * 9 8 7 33 33 H 1.09001 * 109.46835 * 299.99298 * 10 9 8 34 34 H 1.08994 * 109.47229 * 59.99913 * 10 9 8 35 35 H 1.09007 * 109.46948 * 299.99792 * 11 10 9 36 36 H 1.09000 * 109.47334 * 59.99490 * 11 10 9 37 37 H 0.96998 * 119.99567 * 180.02562 * 15 14 12 38 38 H 1.07999 * 120.04413 * 180.27477 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.5019 1.3312 0.0006 5 6 4.1972 1.5204 1.1805 6 6 5.5780 1.4835 1.1841 7 6 6.2689 1.2568 0.0021 8 8 7.6274 1.2208 0.0044 9 6 8.2723 0.9834 -1.2485 10 6 9.7891 0.9773 -1.0484 11 6 10.4795 0.7225 -2.3898 12 6 11.9735 0.7171 -2.1928 13 1 12.3891 0.8796 -1.2093 14 6 12.8099 0.5057 -3.2684 15 7 12.3038 0.3084 -4.4661 16 14 14.6619 0.4983 -3.0240 17 1 14.9732 0.7416 -1.5926 18 1 15.2099 -0.8198 -3.4333 19 1 15.2746 1.5679 -3.8522 20 6 5.5713 1.0623 -1.1804 21 6 4.1880 1.1047 -1.1807 22 9 3.5069 0.9197 -2.3327 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8306 -0.5262 0.7814 27 1 1.6460 1.8947 0.8900 28 1 1.6460 1.8947 -0.8900 29 1 3.6600 1.6972 2.1006 30 1 6.1197 1.6310 2.1066 31 1 7.9544 0.0185 -1.6437 32 1 8.0013 1.7710 -1.9516 33 1 10.1073 1.9420 -0.6531 34 1 10.0597 0.1894 -0.3455 35 1 10.1612 -0.2424 -2.7847 36 1 10.2089 1.5100 -3.0931 37 1 12.8923 0.1593 -5.2226 38 1 6.1068 0.8813 -2.1006 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404071681.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:25 Heat of formation + Delta-G solvation = -95.134965 kcal Electronic energy + Delta-G solvation = -19204.753549 eV Core-core repulsion = 15960.464202 eV Total energy + Delta-G solvation = -3244.289346 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.138 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.93064 -41.16228 -38.95618 -36.72564 -35.91805 -33.73420 -31.91038 -31.57821 -28.98405 -27.20564 -25.50978 -24.44683 -23.73530 -22.32176 -21.98085 -19.54560 -18.57055 -17.83748 -17.32446 -17.25662 -17.05309 -16.63098 -16.48376 -15.70224 -15.40032 -15.31740 -14.99052 -14.92584 -14.65867 -14.34042 -13.81481 -13.49374 -13.32555 -13.11735 -12.85109 -12.67552 -12.58711 -12.42358 -12.23550 -12.07925 -12.05291 -11.56208 -11.46793 -11.24496 -10.58822 -9.96825 -9.43045 -9.18222 -8.23226 -6.34290 0.12223 0.18933 1.40670 1.40803 1.54475 2.11112 2.41677 2.49786 3.10850 3.20445 3.42041 3.66484 3.75874 3.94436 4.00012 4.06037 4.18610 4.37503 4.44296 4.47093 4.56307 4.64335 4.68619 4.79468 4.88041 5.01868 5.04520 5.05694 5.10187 5.20663 5.31248 5.46503 5.63608 5.69951 5.79351 5.99571 6.17532 6.32861 6.44197 6.81678 7.35265 8.89132 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.045825 B = 0.002857 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.868187 B = 9798.083927 C =10249.868648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.710 5.710 3 C 0.110 3.890 4 C -0.165 4.165 5 C -0.032 4.032 6 C -0.165 4.165 7 C 0.146 3.854 8 O -0.319 6.319 9 C 0.068 3.932 10 C -0.095 4.095 11 C 0.027 3.973 12 C -0.543 4.543 13 H 0.063 0.937 14 C -0.001 4.001 15 N -0.933 5.933 16 Si 0.968 3.032 17 H -0.261 1.261 18 H -0.278 1.278 19 H -0.278 1.278 20 C -0.265 4.265 21 C 0.143 3.857 22 F -0.142 7.142 23 H 0.060 0.940 24 H 0.075 0.925 25 H 0.036 0.964 26 H 0.349 0.651 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.176 0.824 30 H 0.155 0.845 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.062 0.938 35 H -0.002 1.002 36 H -0.002 1.002 37 H 0.265 0.735 38 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.504 2.337 13.179 26.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.342 5.342 3 C -0.018 4.018 4 C -0.166 4.166 5 C -0.051 4.051 6 C -0.183 4.183 7 C 0.100 3.900 8 O -0.233 6.233 9 C -0.006 4.006 10 C -0.133 4.133 11 C -0.011 4.011 12 C -0.581 4.581 13 H 0.081 0.919 14 C -0.199 4.199 15 N -0.573 5.573 16 Si 0.792 3.208 17 H -0.185 1.185 18 H -0.203 1.203 19 H -0.203 1.203 20 C -0.285 4.285 21 C 0.123 3.877 22 F -0.120 7.120 23 H 0.079 0.921 24 H 0.093 0.907 25 H 0.054 0.946 26 H 0.167 0.833 27 H 0.087 0.913 28 H 0.089 0.911 29 H 0.194 0.806 30 H 0.173 0.827 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.017 0.983 36 H 0.017 0.983 37 H 0.073 0.927 38 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -22.318 2.252 12.427 25.644 hybrid contribution 0.821 0.029 -0.320 0.882 sum -21.498 2.281 12.107 24.778 Atomic orbital electron populations 1.22213 0.86307 1.02635 1.00825 1.60360 1.08991 1.13766 1.51047 1.20693 0.88289 0.90548 1.02280 1.19921 0.96963 1.07780 0.91970 1.21077 0.92186 0.94071 0.97730 1.20804 0.94438 1.06427 0.96653 1.19136 0.82601 0.94181 0.94092 1.86085 1.16346 1.86092 1.34736 1.22925 0.93455 1.00749 0.83509 1.21429 0.90485 1.02088 0.99265 1.18932 0.94711 0.95389 0.92030 1.21655 0.92612 1.48946 0.94858 0.91918 1.25997 1.04436 0.94645 0.94827 1.70097 1.37043 1.49902 1.00281 0.85353 0.78858 0.77830 0.78737 1.18504 1.20335 1.20340 1.21303 0.94059 1.13328 0.99819 1.17397 0.88715 0.99387 0.82210 1.91472 1.79968 1.92419 1.48155 0.92139 0.90663 0.94559 0.83254 0.91327 0.91087 0.80640 0.82693 0.91971 0.91907 0.91869 0.91894 0.98344 0.98336 0.92661 0.85039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.70 127.69 1.37 1.71 16 2 N -0.71 -11.45 6.84 -541.25 -3.70 -15.16 16 3 C 0.11 1.75 5.53 85.56 0.47 2.23 16 4 C -0.16 -3.31 5.40 -19.81 -0.11 -3.41 16 5 C -0.03 -0.53 9.66 22.25 0.21 -0.31 16 6 C -0.16 -3.47 9.99 22.37 0.22 -3.25 16 7 C 0.15 4.14 6.69 22.50 0.15 4.29 16 8 O -0.32 -10.49 10.14 -92.43 -0.94 -11.43 16 9 C 0.07 2.42 4.74 71.98 0.34 2.76 16 10 C -0.10 -3.95 5.52 30.59 0.17 -3.78 16 11 C 0.03 1.39 4.97 29.85 0.15 1.54 16 12 C -0.54 -30.83 9.11 25.60 0.23 -30.60 16 13 H 0.06 3.42 7.74 -2.91 -0.02 3.39 16 14 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 15 N -0.93 -56.68 13.29 21.45 0.28 -56.40 16 16 Si 0.97 44.17 29.54 68.60 2.03 46.19 16 17 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 18 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 19 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 20 C -0.27 -7.70 9.02 22.41 0.20 -7.50 16 21 C 0.14 3.80 7.24 22.36 0.16 3.96 16 22 F -0.14 -4.13 16.66 44.97 0.75 -3.38 16 23 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 24 H 0.07 0.78 8.14 -2.39 -0.02 0.77 16 25 H 0.04 0.32 8.14 -2.39 -0.02 0.30 16 26 H 0.35 4.79 8.81 -89.69 -0.79 4.00 16 27 H 0.07 0.73 8.00 -2.39 -0.02 0.71 16 28 H 0.07 1.28 7.94 -2.39 -0.02 1.26 16 29 H 0.18 1.39 8.03 -2.91 -0.02 1.37 16 30 H 0.16 2.67 8.06 -2.91 -0.02 2.65 16 31 H 0.06 2.17 7.65 -2.38 -0.02 2.15 16 32 H 0.06 2.18 7.67 -2.39 -0.02 2.16 16 33 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 34 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 35 H 0.00 -0.10 8.14 -2.38 -0.02 -0.12 16 36 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 37 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 38 H 0.13 4.00 6.30 -2.91 -0.02 3.98 16 Total: -1.00 -66.15 327.32 2.72 -63.43 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: 0.26 Total: 8.70 kcal Atomic # 6 Polarization: -36.01 SS G_CDS: 4.04 Total: -31.97 kcal Atomic # 7 Polarization: -68.14 SS G_CDS: -3.42 Total: -71.56 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: -0.94 Total: -11.43 kcal Atomic # 9 Polarization: -4.13 SS G_CDS: 0.75 Total: -3.38 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.19 kcal Total: -66.15 2.72 -63.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404071681.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.701 kcal (2) G-P(sol) polarization free energy of solvation -66.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds