Wall clock time and date at job start Mon Mar 30 2020 07:01:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.46871 * 2 1 4 4 N 1.46909 * 109.47160 * 119.99669 * 2 1 3 5 5 C 1.50699 * 109.47218 * 239.99924 * 2 1 3 6 6 C 1.38169 * 120.01381 * 264.97851 * 5 2 1 7 7 C 1.38437 * 120.03001 * 180.02562 * 6 5 2 8 8 F 1.35099 * 119.96795 * 180.02562 * 7 6 5 9 9 C 1.38478 * 120.05736 * 0.02562 * 7 6 5 10 10 C 1.38127 * 120.02918 * 359.74488 * 9 7 6 11 11 C 1.38679 * 120.01502 * 84.99686 * 5 2 1 12 12 O 1.35950 * 120.03232 * 359.96026 * 11 5 2 13 13 C 1.42898 * 117.00328 * 174.79934 * 12 11 5 14 14 H 1.09003 * 109.46682 * 324.94156 * 13 12 11 15 15 C 1.52998 * 109.47649 * 84.94237 * 13 12 11 16 16 C 1.52998 * 109.47120 * 204.94825 * 13 12 11 17 17 C 1.50704 * 109.47532 * 64.99188 * 16 13 12 18 18 H 1.07993 * 119.99772 * 0.02562 * 17 16 13 19 19 C 1.37872 * 120.00058 * 180.27293 * 17 16 13 20 20 N 1.31518 * 120.00132 * 359.73095 * 19 17 16 21 21 Si 1.86804 * 119.99985 * 179.72560 * 19 17 16 22 22 H 1.48502 * 109.46749 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.46914 * 120.00470 * 21 19 17 24 24 H 1.48500 * 109.47308 * 240.00537 * 21 19 17 25 25 H 1.08998 * 109.46838 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.47116 * 299.99873 * 1 2 3 27 27 H 1.08994 * 109.47072 * 60.00042 * 1 2 3 28 28 H 1.00895 * 110.99610 * 56.04957 * 4 2 1 29 29 H 1.00898 * 110.99661 * 179.97438 * 4 2 1 30 30 H 1.08000 * 119.98764 * 0.02562 * 6 5 2 31 31 H 1.08002 * 119.97872 * 180.02562 * 9 7 6 32 32 H 1.08005 * 120.01250 * 180.27608 * 10 9 7 33 33 H 1.09003 * 109.46727 * 59.99551 * 15 13 12 34 34 H 1.08998 * 109.47134 * 180.02562 * 15 13 12 35 35 H 1.09003 * 109.47179 * 300.00728 * 15 13 12 36 36 H 1.09006 * 109.47031 * 304.99347 * 16 13 12 37 37 H 1.08996 * 109.47106 * 185.00025 * 16 13 12 38 38 H 0.96997 * 119.99974 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0324 -0.7104 -1.2304 6 6 2.3615 -2.0509 -1.1686 7 6 2.8235 -2.7037 -2.2986 8 9 3.1445 -4.0146 -2.2368 9 6 2.9569 -2.0142 -3.4921 10 6 2.6241 -0.6753 -3.5578 11 6 2.1649 -0.0189 -2.4252 12 8 1.8410 1.3000 -2.4876 13 6 2.1094 1.9765 -3.7173 14 1 3.0218 1.5770 -4.1601 15 6 0.9401 1.7657 -4.6812 16 6 2.2855 3.4723 -3.4485 17 6 3.5109 3.6892 -2.5984 18 1 4.1048 2.8446 -2.2819 19 6 3.8707 4.9654 -2.2205 20 7 3.1477 5.9940 -2.6064 21 14 5.3852 5.2335 -1.1604 22 1 6.0202 3.9241 -0.8643 23 1 6.3502 6.0985 -1.8855 24 1 4.9895 5.8909 0.1110 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 1.6443 -1.6273 1.2559 29 1 3.0284 -0.7063 1.2226 30 1 2.2583 -2.5897 -0.2383 31 1 3.3171 -2.5249 -4.3729 32 1 2.7241 -0.1389 -4.4899 33 1 0.0277 2.1651 -4.2384 34 1 1.1451 2.2814 -5.6194 35 1 0.8146 0.7000 -4.8727 36 1 1.4084 3.8533 -2.9254 37 1 2.4018 4.0003 -4.3950 38 1 3.4006 6.8917 -2.3402 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695889708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:19 Heat of formation + Delta-G solvation = -74.552598 kcal Electronic energy + Delta-G solvation = -20675.357652 eV Core-core repulsion = 17431.960824 eV Total energy + Delta-G solvation = -3243.396828 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.138 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.73644 -40.18956 -37.59195 -35.50705 -33.52718 -31.71794 -30.27466 -29.36378 -28.32218 -27.52842 -23.90544 -23.50755 -22.33387 -20.74912 -19.99242 -17.92580 -16.99514 -16.61081 -16.40837 -15.72096 -15.45576 -14.82598 -14.73660 -14.54673 -14.31393 -14.01858 -13.70746 -12.90749 -12.79366 -12.64634 -12.27433 -11.98748 -11.89261 -11.74260 -11.55262 -11.45640 -11.13502 -10.96082 -10.80544 -10.74709 -10.42996 -10.08922 -9.47163 -9.16165 -9.04052 -8.69421 -8.44039 -7.73619 -6.06915 -4.08753 1.20684 1.38597 3.28803 3.36927 3.41194 3.64303 3.74912 4.33310 4.42015 4.66523 4.71483 4.80141 5.11680 5.28148 5.30615 5.46485 5.47538 5.55262 5.62762 5.68211 5.83547 5.87564 5.96922 6.09281 6.12096 6.20870 6.29413 6.35691 6.49829 6.54659 6.65253 6.84480 7.18723 7.40935 7.48221 7.50753 7.89211 7.98645 8.29004 8.94961 9.55375 11.04395 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.017613 B = 0.005861 C = 0.005445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.390106 B = 4776.507860 C = 5141.312068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.135 3.865 3 H 0.107 0.893 4 N -0.839 5.839 5 C -0.132 4.132 6 C -0.120 4.120 7 C 0.043 3.957 8 F -0.148 7.148 9 C -0.114 4.114 10 C -0.186 4.186 11 C 0.152 3.848 12 O -0.281 6.281 13 C 0.085 3.915 14 H 0.063 0.937 15 C -0.178 4.178 16 C 0.026 3.974 17 C -0.515 4.515 18 H 0.056 0.944 19 C 0.059 3.941 20 N -0.895 5.895 21 Si 0.891 3.109 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.283 1.283 25 H 0.047 0.953 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.334 0.666 29 H 0.343 0.657 30 H 0.131 0.869 31 H 0.132 0.868 32 H 0.141 0.859 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.048 0.952 36 H 0.030 0.970 37 H 0.039 0.961 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.464 -14.656 0.055 15.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.023 3.977 3 H 0.125 0.875 4 N -0.368 5.368 5 C -0.135 4.135 6 C -0.140 4.140 7 C 0.024 3.976 8 F -0.127 7.127 9 C -0.133 4.133 10 C -0.205 4.205 11 C 0.104 3.896 12 O -0.193 6.193 13 C 0.029 3.971 14 H 0.081 0.919 15 C -0.236 4.236 16 C -0.011 4.011 17 C -0.553 4.553 18 H 0.074 0.926 19 C -0.142 4.142 20 N -0.534 5.534 21 Si 0.719 3.281 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.209 1.209 25 H 0.066 0.934 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.147 0.853 29 H 0.156 0.844 30 H 0.149 0.851 31 H 0.150 0.850 32 H 0.159 0.841 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.067 0.933 36 H 0.048 0.952 37 H 0.057 0.943 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.937 -13.777 0.642 14.343 hybrid contribution 1.492 -0.785 -0.478 1.752 sum -2.444 -14.562 0.164 14.766 Atomic orbital electron populations 1.21736 0.93496 1.01355 1.02708 1.20325 0.95607 0.98553 0.83212 0.87494 1.59044 1.14185 1.23196 1.40355 1.20068 1.04388 0.93197 0.95864 1.20624 1.01528 0.93964 0.97836 1.17398 1.06332 0.78564 0.95300 1.91448 1.91160 1.32990 1.97139 1.20874 1.01086 0.94567 0.96787 1.21278 1.05181 0.94747 0.99314 1.19010 0.92650 0.85260 0.92694 1.86305 1.76989 1.17059 1.38967 1.22941 0.95726 0.96746 0.81661 0.91932 1.22423 1.00140 1.00917 1.00082 1.19274 0.98287 0.85409 0.98116 1.21122 1.09867 0.92465 1.31847 0.92613 1.24965 0.96938 0.96137 0.96183 1.69952 1.38934 0.98726 1.45827 0.86545 0.82961 0.78241 0.80364 1.19740 1.21039 1.20865 0.93364 0.91608 0.91518 0.85328 0.84375 0.85081 0.85018 0.84127 0.91761 0.91253 0.93332 0.95160 0.94320 0.92936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.44 37.16 0.35 -1.45 16 2 C 0.13 1.97 3.32 -68.86 -0.23 1.74 16 3 H 0.11 1.89 7.69 -51.93 -0.40 1.49 16 4 N -0.84 -10.37 8.77 -5.65 -0.05 -10.42 16 5 C -0.13 -1.99 5.03 -104.49 -0.53 -2.52 16 6 C -0.12 -1.61 9.24 -39.53 -0.37 -1.98 16 7 C 0.04 0.61 7.30 -39.42 -0.29 0.32 16 8 F -0.15 -2.06 17.27 2.25 0.04 -2.03 16 9 C -0.11 -1.55 10.02 -39.53 -0.40 -1.95 16 10 C -0.19 -2.80 8.24 -39.44 -0.33 -3.12 16 11 C 0.15 2.56 6.57 -39.24 -0.26 2.31 16 12 O -0.28 -5.45 8.69 -19.58 -0.17 -5.62 16 13 C 0.08 1.63 2.17 -26.73 -0.06 1.58 16 14 H 0.06 1.18 6.31 -51.93 -0.33 0.85 16 15 C -0.18 -2.80 9.17 37.16 0.34 -2.46 16 16 C 0.03 0.63 4.68 -27.88 -0.13 0.50 16 17 C -0.51 -14.03 8.88 -34.44 -0.31 -14.33 16 18 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 19 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 20 N -0.90 -26.10 13.29 55.43 0.74 -25.37 16 21 Si 0.89 21.49 29.54 -169.99 -5.02 16.46 16 22 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.85 8.14 -51.92 -0.42 0.43 16 27 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.33 3.46 7.40 -39.29 -0.29 3.17 16 29 H 0.34 4.08 9.02 -39.29 -0.35 3.73 16 30 H 0.13 1.45 6.39 -52.49 -0.34 1.12 16 31 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 32 H 0.14 1.97 5.43 -52.48 -0.28 1.69 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.05 0.67 6.91 -51.93 -0.36 0.31 16 36 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 318.64 15.07 4.80 4.80 Total: -1.00 -29.03 318.64 -7.22 -36.26 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -5.27 Total: 5.74 kcal Atomic # 6 Polarization: -17.54 SS G_CDS: -2.29 Total: -19.83 kcal Atomic # 7 Polarization: -36.48 SS G_CDS: 0.69 Total: -35.79 kcal Atomic # 8 Polarization: -5.45 SS G_CDS: -0.17 Total: -5.62 kcal Atomic # 9 Polarization: -2.06 SS G_CDS: 0.04 Total: -2.03 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.03 -7.22 -36.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695889708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.294 kcal (2) G-P(sol) polarization free energy of solvation -29.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds