Wall clock time and date at job start Mon Mar 30 2020 07:01:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.46871 * 2 1 4 4 N 1.46909 * 109.47160 * 119.99669 * 2 1 3 5 5 C 1.50699 * 109.47218 * 239.99924 * 2 1 3 6 6 C 1.38169 * 120.01381 * 264.97851 * 5 2 1 7 7 C 1.38437 * 120.03001 * 180.02562 * 6 5 2 8 8 F 1.35099 * 119.96795 * 180.02562 * 7 6 5 9 9 C 1.38478 * 120.05736 * 0.02562 * 7 6 5 10 10 C 1.38127 * 120.02918 * 359.74488 * 9 7 6 11 11 C 1.38679 * 120.01502 * 84.99686 * 5 2 1 12 12 O 1.35950 * 120.03232 * 359.96026 * 11 5 2 13 13 C 1.42898 * 117.00328 * 174.79934 * 12 11 5 14 14 H 1.09003 * 109.46682 * 324.94156 * 13 12 11 15 15 C 1.52998 * 109.47649 * 84.94237 * 13 12 11 16 16 C 1.52998 * 109.47120 * 204.94825 * 13 12 11 17 17 C 1.50704 * 109.47532 * 64.99188 * 16 13 12 18 18 H 1.07993 * 119.99772 * 0.02562 * 17 16 13 19 19 C 1.37872 * 120.00058 * 180.27293 * 17 16 13 20 20 N 1.31518 * 120.00132 * 359.73095 * 19 17 16 21 21 Si 1.86804 * 119.99985 * 179.72560 * 19 17 16 22 22 H 1.48502 * 109.46749 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.46914 * 120.00470 * 21 19 17 24 24 H 1.48500 * 109.47308 * 240.00537 * 21 19 17 25 25 H 1.08998 * 109.46838 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.47116 * 299.99873 * 1 2 3 27 27 H 1.08994 * 109.47072 * 60.00042 * 1 2 3 28 28 H 1.00895 * 110.99610 * 56.04957 * 4 2 1 29 29 H 1.00898 * 110.99661 * 179.97438 * 4 2 1 30 30 H 1.08000 * 119.98764 * 0.02562 * 6 5 2 31 31 H 1.08002 * 119.97872 * 180.02562 * 9 7 6 32 32 H 1.08005 * 120.01250 * 180.27608 * 10 9 7 33 33 H 1.09003 * 109.46727 * 59.99551 * 15 13 12 34 34 H 1.08998 * 109.47134 * 180.02562 * 15 13 12 35 35 H 1.09003 * 109.47179 * 300.00728 * 15 13 12 36 36 H 1.09006 * 109.47031 * 304.99347 * 16 13 12 37 37 H 1.08996 * 109.47106 * 185.00025 * 16 13 12 38 38 H 0.96997 * 119.99974 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0324 -0.7104 -1.2304 6 6 2.3615 -2.0509 -1.1686 7 6 2.8235 -2.7037 -2.2986 8 9 3.1445 -4.0146 -2.2368 9 6 2.9569 -2.0142 -3.4921 10 6 2.6241 -0.6753 -3.5578 11 6 2.1649 -0.0189 -2.4252 12 8 1.8410 1.3000 -2.4876 13 6 2.1094 1.9765 -3.7173 14 1 3.0218 1.5770 -4.1601 15 6 0.9401 1.7657 -4.6812 16 6 2.2855 3.4723 -3.4485 17 6 3.5109 3.6892 -2.5984 18 1 4.1048 2.8446 -2.2819 19 6 3.8707 4.9654 -2.2205 20 7 3.1477 5.9940 -2.6064 21 14 5.3852 5.2335 -1.1604 22 1 6.0202 3.9241 -0.8643 23 1 6.3502 6.0985 -1.8855 24 1 4.9895 5.8909 0.1110 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 1.6443 -1.6273 1.2559 29 1 3.0284 -0.7063 1.2226 30 1 2.2583 -2.5897 -0.2383 31 1 3.3171 -2.5249 -4.3729 32 1 2.7241 -0.1389 -4.4899 33 1 0.0277 2.1651 -4.2384 34 1 1.1451 2.2814 -5.6194 35 1 0.8146 0.7000 -4.8727 36 1 1.4084 3.8533 -2.9254 37 1 2.4018 4.0003 -4.3950 38 1 3.4006 6.8917 -2.3402 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695889708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:19 Heat of formation + Delta-G solvation = -91.960067 kcal Electronic energy + Delta-G solvation = -20676.112497 eV Core-core repulsion = 17431.960824 eV Total energy + Delta-G solvation = -3244.151672 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.138 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.83067 -41.43672 -38.90310 -36.61904 -35.43621 -33.43631 -31.39938 -30.50868 -29.47362 -29.31237 -25.33751 -25.01192 -23.69943 -21.99405 -21.37184 -19.19056 -18.53115 -18.18839 -17.76332 -16.85355 -16.60871 -16.49080 -16.10107 -15.80122 -15.53583 -15.30202 -14.94506 -14.41814 -14.05003 -13.93127 -13.70469 -13.46747 -13.34837 -13.30935 -12.86044 -12.75255 -12.67473 -12.60507 -12.34095 -12.10474 -11.88181 -11.70128 -11.29340 -11.04594 -10.59142 -10.12680 -9.74245 -8.96584 -8.21387 -6.29663 0.10288 0.22180 1.36936 1.38998 1.50411 2.36943 2.39472 2.53057 3.13893 3.22599 3.60770 3.61154 3.75960 3.98117 4.07116 4.19294 4.28236 4.32326 4.35844 4.44250 4.59210 4.73562 4.81815 4.90329 4.96958 5.00232 5.09454 5.20750 5.22426 5.27184 5.37665 5.39703 5.48410 5.76376 5.78381 6.14973 6.18429 6.57520 6.61327 6.82524 7.38087 8.90380 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.017613 B = 0.005861 C = 0.005445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.390106 B = 4776.507860 C = 5141.312068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.139 3.861 3 H 0.068 0.932 4 N -0.836 5.836 5 C -0.137 4.137 6 C -0.113 4.113 7 C 0.042 3.958 8 F -0.146 7.146 9 C -0.110 4.110 10 C -0.189 4.189 11 C 0.123 3.877 12 O -0.306 6.306 13 C 0.093 3.907 14 H 0.067 0.933 15 C -0.168 4.168 16 C 0.029 3.971 17 C -0.526 4.526 18 H 0.051 0.949 19 C 0.006 3.994 20 N -0.930 5.930 21 Si 0.954 3.046 22 H -0.268 1.268 23 H -0.275 1.275 24 H -0.280 1.280 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.051 0.949 28 H 0.348 0.652 29 H 0.347 0.653 30 H 0.157 0.843 31 H 0.158 0.842 32 H 0.149 0.851 33 H 0.057 0.943 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.000 1.000 37 H 0.025 0.975 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.851 -16.891 0.247 17.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.027 3.973 3 H 0.086 0.914 4 N -0.366 5.366 5 C -0.140 4.140 6 C -0.132 4.132 7 C 0.023 3.977 8 F -0.124 7.124 9 C -0.129 4.129 10 C -0.208 4.208 11 C 0.075 3.925 12 O -0.219 6.219 13 C 0.037 3.963 14 H 0.085 0.915 15 C -0.225 4.225 16 C -0.008 4.008 17 C -0.564 4.564 18 H 0.069 0.931 19 C -0.192 4.192 20 N -0.570 5.570 21 Si 0.780 3.220 22 H -0.192 1.192 23 H -0.201 1.201 24 H -0.206 1.206 25 H 0.086 0.914 26 H 0.085 0.915 27 H 0.070 0.930 28 H 0.163 0.837 29 H 0.160 0.840 30 H 0.174 0.826 31 H 0.176 0.824 32 H 0.166 0.834 33 H 0.076 0.924 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.018 0.982 37 H 0.043 0.957 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.323 -16.041 0.834 16.403 hybrid contribution 1.303 -0.181 -0.510 1.410 sum -2.021 -16.222 0.325 16.351 Atomic orbital electron populations 1.21677 0.92644 1.02400 1.02038 1.20105 0.96250 0.96844 0.84093 0.91375 1.58967 1.14553 1.24109 1.39008 1.20160 1.04586 0.93854 0.95388 1.20811 1.00339 0.93176 0.98852 1.17542 1.05879 0.78686 0.95576 1.91463 1.91078 1.32761 1.97136 1.21133 1.00070 0.93945 0.97734 1.21384 1.04990 0.95386 0.99001 1.19315 0.94554 0.84360 0.94231 1.86234 1.77873 1.18854 1.38919 1.22623 0.97604 0.93523 0.82519 0.91498 1.22321 0.98171 1.02637 0.99401 1.19113 0.95956 0.89266 0.96480 1.21453 1.10653 0.92374 1.31960 0.93112 1.25793 0.99890 0.96012 0.97509 1.70060 1.40642 0.99160 1.47148 0.85553 0.79535 0.78279 0.78654 1.19224 1.20099 1.20558 0.91367 0.91477 0.93018 0.83672 0.83977 0.82601 0.82399 0.83387 0.92408 0.90077 0.90919 0.98154 0.95689 0.92743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.40 9.44 71.98 0.68 -2.72 16 2 C 0.14 4.03 3.32 44.17 0.15 4.17 16 3 H 0.07 2.51 7.69 -2.38 -0.02 2.49 16 4 N -0.84 -19.43 8.77 -171.78 -1.51 -20.93 16 5 C -0.14 -3.97 5.03 -19.78 -0.10 -4.07 16 6 C -0.11 -2.74 9.24 22.30 0.21 -2.54 16 7 C 0.04 1.06 7.30 22.37 0.16 1.22 16 8 F -0.15 -3.57 17.27 44.97 0.78 -2.79 16 9 C -0.11 -2.68 10.02 22.30 0.22 -2.46 16 10 C -0.19 -5.34 8.24 22.36 0.18 -5.15 16 11 C 0.12 4.06 6.57 22.49 0.15 4.21 16 12 O -0.31 -12.10 8.69 -92.99 -0.81 -12.91 16 13 C 0.09 3.63 2.17 30.59 0.07 3.69 16 14 H 0.07 2.51 6.31 -2.39 -0.02 2.50 16 15 C -0.17 -5.18 9.17 71.98 0.66 -4.52 16 16 C 0.03 1.45 4.68 29.85 0.14 1.59 16 17 C -0.53 -29.41 8.88 25.60 0.23 -29.19 16 18 H 0.05 2.82 7.74 -2.91 -0.02 2.80 16 19 C 0.01 0.34 5.46 84.65 0.46 0.80 16 20 N -0.93 -55.49 13.29 21.45 0.28 -55.21 16 21 Si 0.95 44.53 29.54 68.60 2.03 46.55 16 22 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 23 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 24 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 25 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 27 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.35 6.32 7.40 -89.70 -0.66 5.65 16 29 H 0.35 7.74 9.02 -89.70 -0.81 6.93 16 30 H 0.16 2.92 6.39 -2.91 -0.02 2.90 16 31 H 0.16 2.97 8.06 -2.91 -0.02 2.95 16 32 H 0.15 3.88 5.43 -2.91 -0.02 3.87 16 33 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 35 H 0.07 1.88 6.91 -2.39 -0.02 1.87 16 36 H 0.00 0.00 8.14 -2.38 -0.02 -0.02 16 37 H 0.02 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 Total: -1.00 -63.16 318.64 3.59 -59.57 By element: Atomic # 1 Polarization: 21.07 SS G_CDS: -0.39 Total: 20.68 kcal Atomic # 6 Polarization: -38.16 SS G_CDS: 3.21 Total: -34.95 kcal Atomic # 7 Polarization: -74.92 SS G_CDS: -1.22 Total: -76.14 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: -0.81 Total: -12.91 kcal Atomic # 9 Polarization: -3.57 SS G_CDS: 0.78 Total: -2.79 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.55 kcal Total: -63.16 3.59 -59.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695889708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.395 kcal (2) G-P(sol) polarization free energy of solvation -63.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds