Wall clock time and date at job start Mon Mar 30 2020 07:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47119 * 2 1 4 4 C 1.52999 * 109.47380 * 240.00004 * 2 1 3 5 5 F 1.39893 * 109.47316 * 180.02562 * 4 2 1 6 6 N 1.46906 * 109.46780 * 119.99960 * 2 1 3 7 7 C 1.46901 * 111.00153 * 270.38015 * 6 2 1 8 8 H 1.09002 * 109.46711 * 39.78780 * 7 6 2 9 9 C 1.52995 * 109.47223 * 159.78711 * 7 6 2 10 10 C 1.50697 * 109.47030 * 279.79570 * 7 6 2 11 11 C 1.38299 * 119.92971 * 319.71772 * 10 7 6 12 12 C 1.38100 * 120.06887 * 179.72848 * 11 10 7 13 13 C 1.38887 * 119.93041 * 0.53342 * 12 11 10 14 14 O 1.35749 * 120.06733 * 179.72766 * 13 12 11 15 15 C 1.34836 * 116.99429 * 185.80219 * 14 13 12 16 16 H 1.07994 * 120.00225 * 5.45568 * 15 14 13 17 17 C 1.38655 * 119.99732 * 185.46337 * 15 14 13 18 18 N 1.31559 * 119.99951 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00005 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47343 * 59.99652 * 19 17 15 21 21 H 1.48503 * 109.47395 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.46920 * 299.99820 * 19 17 15 23 23 C 1.38883 * 119.85968 * 359.74025 * 13 12 11 24 24 C 1.38104 * 119.92920 * 0.02562 * 23 13 12 25 25 H 1.09002 * 109.47084 * 305.00112 * 1 2 3 26 26 H 1.09003 * 109.46765 * 64.99307 * 1 2 3 27 27 H 1.09002 * 109.47227 * 184.99635 * 1 2 3 28 28 H 1.08998 * 109.46952 * 59.99728 * 4 2 1 29 29 H 1.09001 * 109.46991 * 300.00075 * 4 2 1 30 30 H 1.00900 * 110.99431 * 146.42902 * 6 2 1 31 31 H 1.08993 * 109.47382 * 295.01252 * 9 7 6 32 32 H 1.09008 * 109.46539 * 55.01126 * 9 7 6 33 33 H 1.09003 * 109.47354 * 175.00414 * 9 7 6 34 34 H 1.07998 * 119.96817 * 359.97438 * 11 10 7 35 35 H 1.08005 * 120.03997 * 180.27494 * 12 11 10 36 36 H 0.96999 * 120.00024 * 180.02562 * 18 17 15 37 37 H 1.07992 * 120.03365 * 179.97438 * 23 13 12 38 38 H 1.08000 * 119.95981 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 9 3.4390 -0.7217 -1.2489 6 7 2.0196 -0.6925 1.1995 7 6 2.1865 0.2454 2.3177 8 1 1.3602 0.9564 2.3219 9 6 2.1987 -0.5301 3.6365 10 6 3.4878 0.9888 2.1598 11 6 4.6162 0.3194 1.7226 12 6 5.8089 0.9990 1.5715 13 6 5.8771 2.3538 1.8698 14 8 7.0494 3.0233 1.7276 15 6 7.0774 4.3043 2.1474 16 1 6.2214 4.7256 2.6535 17 6 8.2051 5.0809 1.9291 18 7 9.2480 4.5676 1.3129 19 14 8.2437 6.8558 2.5101 20 1 8.0580 6.8988 3.9828 21 1 9.5524 7.4634 2.1587 22 1 7.1515 7.6161 1.8510 23 6 4.7435 3.0219 2.3141 24 6 3.5526 2.3376 2.4585 25 1 -0.3633 0.5895 0.8418 26 1 -0.3633 0.4344 -0.9314 27 1 -0.3634 -1.0238 0.0895 28 1 1.6767 -0.2074 -2.1392 29 1 1.6767 -1.7489 -1.2492 30 1 2.8801 -1.1833 1.0077 31 1 1.2258 -0.9958 3.7932 32 1 2.9684 -1.3010 3.5974 33 1 2.4110 0.1538 4.4583 34 1 4.5638 -0.7351 1.4952 35 1 6.6888 0.4767 1.2258 36 1 10.0371 5.1108 1.1606 37 1 4.7934 4.0752 2.5472 38 1 2.6709 2.8566 2.8043 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702560650.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:26 Heat of formation + Delta-G solvation = -63.909458 kcal Electronic energy + Delta-G solvation = -20325.937725 eV Core-core repulsion = 17083.002418 eV Total energy + Delta-G solvation = -3242.935307 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.138 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -47.58571 -39.32930 -37.79953 -35.82025 -33.03392 -32.13490 -30.25838 -28.48704 -27.94976 -26.52385 -25.39166 -22.58622 -21.97590 -20.83819 -19.97007 -17.95535 -17.08534 -16.44256 -16.13004 -15.85436 -14.90248 -14.74850 -14.50415 -14.29971 -13.72348 -13.58730 -13.43291 -13.20013 -12.72048 -12.55833 -12.55342 -12.12708 -11.97505 -11.70500 -11.64820 -11.39887 -11.11276 -11.08716 -10.74305 -10.61252 -10.55740 -10.50226 -10.38779 -9.36793 -8.82492 -8.43918 -8.17475 -7.16840 -6.45278 -4.04246 2.21371 2.30249 3.12552 3.13356 3.16396 3.96191 4.12004 4.47351 4.54773 4.85557 4.93279 5.04014 5.09502 5.16823 5.30294 5.39116 5.45995 5.59175 5.64956 5.69142 5.72409 5.78403 5.87390 6.03003 6.07969 6.16983 6.22139 6.37039 6.39558 6.69009 6.86983 6.97149 7.10007 7.24295 7.40333 7.44192 7.45640 7.82207 7.99443 9.00084 9.70677 10.72694 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.026983 B = 0.004432 C = 0.004231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.432223 B = 6315.559270 C = 6616.684098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.049 3.951 3 H 0.063 0.937 4 C 0.056 3.944 5 F -0.212 7.212 6 N -0.678 5.678 7 C 0.139 3.861 8 H 0.075 0.925 9 C -0.132 4.132 10 C -0.215 4.215 11 C -0.064 4.064 12 C -0.187 4.187 13 C 0.154 3.846 14 O -0.177 6.177 15 C -0.392 4.392 16 H 0.090 0.910 17 C 0.040 3.960 18 N -0.862 5.862 19 Si 0.941 3.059 20 H -0.270 1.270 21 H -0.278 1.278 22 H -0.270 1.270 23 C -0.233 4.233 24 C -0.065 4.065 25 H 0.059 0.941 26 H 0.055 0.945 27 H 0.062 0.938 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.345 0.655 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.108 0.892 35 H 0.116 0.884 36 H 0.271 0.729 37 H 0.126 0.874 38 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.519 -8.010 -1.058 17.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.062 4.062 3 H 0.081 0.919 4 C 0.001 3.999 5 F -0.193 7.193 6 N -0.311 5.311 7 C 0.030 3.970 8 H 0.093 0.907 9 C -0.190 4.190 10 C -0.217 4.217 11 C -0.082 4.082 12 C -0.207 4.207 13 C 0.100 3.900 14 O -0.081 6.081 15 C -0.469 4.469 16 H 0.108 0.892 17 C -0.165 4.165 18 N -0.497 5.497 19 Si 0.765 3.235 20 H -0.195 1.195 21 H -0.202 1.202 22 H -0.195 1.195 23 C -0.252 4.252 24 C -0.084 4.084 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.082 0.918 28 H 0.095 0.905 29 H 0.097 0.903 30 H 0.166 0.834 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.126 0.874 35 H 0.134 0.866 36 H 0.080 0.920 37 H 0.143 0.857 38 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -15.646 -8.211 -1.032 17.700 hybrid contribution 0.929 1.510 -0.013 1.773 sum -14.717 -6.701 -1.045 16.205 Atomic orbital electron populations 1.21715 0.93744 1.02497 1.01474 1.22091 0.96440 0.97963 0.89665 0.91866 1.22247 0.76103 1.02474 0.99072 1.92809 1.30838 1.98050 1.97646 1.60941 1.36526 1.28314 1.05287 1.20312 0.93786 0.92174 0.90756 0.90716 1.21727 1.01404 1.00002 0.95840 1.19961 0.96125 0.94854 1.10796 1.20308 0.91858 0.97992 0.98061 1.20166 0.98510 0.92317 1.09672 1.19411 0.86370 0.91727 0.92488 1.83997 1.27140 1.25581 1.71355 1.21265 1.02856 0.85377 1.37367 0.89214 1.25288 0.94628 0.99968 0.96598 1.70031 1.04210 1.36976 1.38488 0.85788 0.78053 0.80451 0.79177 1.19492 1.20240 1.19531 1.21145 0.93091 1.00924 1.10063 1.20577 0.96577 0.93377 0.97844 0.92220 0.92580 0.91843 0.90541 0.90344 0.83441 0.92692 0.92749 0.92389 0.87450 0.86617 0.91954 0.85664 0.87750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.45 37.16 0.35 -0.89 16 2 C 0.05 0.56 2.79 -67.71 -0.19 0.37 16 3 H 0.06 0.88 7.41 -51.93 -0.38 0.49 16 4 C 0.06 0.60 7.03 37.16 0.26 0.86 16 5 F -0.21 -3.10 16.66 2.25 0.04 -3.06 16 6 N -0.68 -8.45 6.03 -100.95 -0.61 -9.06 16 7 C 0.14 1.88 2.68 -68.87 -0.18 1.70 16 8 H 0.07 0.98 7.40 -51.93 -0.38 0.59 16 9 C -0.13 -1.62 9.49 37.15 0.35 -1.27 16 10 C -0.22 -3.65 4.37 -104.58 -0.46 -4.10 16 11 C -0.06 -1.16 9.16 -39.61 -0.36 -1.52 16 12 C -0.19 -4.08 9.99 -39.39 -0.39 -4.48 16 13 C 0.15 3.80 6.65 -39.10 -0.26 3.54 16 14 O -0.18 -5.15 9.76 0.03 0.00 -5.15 16 15 C -0.39 -11.10 9.44 30.89 0.29 -10.81 16 16 H 0.09 2.35 5.30 -52.49 -0.28 2.07 16 17 C 0.04 1.10 5.49 -17.51 -0.10 1.00 16 18 N -0.86 -25.53 13.67 55.48 0.76 -24.77 16 19 Si 0.94 20.64 29.55 -169.99 -5.02 15.62 16 20 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 21 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 22 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 23 C -0.23 -5.13 9.13 -39.39 -0.36 -5.49 16 24 C -0.06 -1.20 9.66 -39.61 -0.38 -1.58 16 25 H 0.06 0.56 7.79 -51.93 -0.40 0.16 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.34 4.57 5.49 -39.29 -0.22 4.35 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.68 8.14 -51.92 -0.42 0.26 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.11 1.72 6.51 -52.49 -0.34 1.38 16 35 H 0.12 2.47 8.06 -52.48 -0.42 2.05 16 36 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 37 H 0.13 2.77 5.72 -52.49 -0.30 2.47 16 38 H 0.10 1.64 8.03 -52.49 -0.42 1.22 16 LS Contribution 319.32 15.07 4.81 4.81 Total: -1.00 -30.62 319.32 -6.70 -37.32 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -5.25 Total: 6.96 kcal Atomic # 6 Polarization: -21.24 SS G_CDS: -1.43 Total: -22.67 kcal Atomic # 7 Polarization: -33.98 SS G_CDS: 0.15 Total: -33.83 kcal Atomic # 8 Polarization: -5.15 SS G_CDS: 0.00 Total: -5.15 kcal Atomic # 9 Polarization: -3.10 SS G_CDS: 0.04 Total: -3.06 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.62 -6.70 -37.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702560650.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.589 kcal (2) G-P(sol) polarization free energy of solvation -30.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds