Wall clock time and date at job start Mon Mar 30 2020 07:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47119 * 2 1 4 4 C 1.52999 * 109.47380 * 240.00004 * 2 1 3 5 5 F 1.39893 * 109.47316 * 180.02562 * 4 2 1 6 6 N 1.46906 * 109.46780 * 119.99960 * 2 1 3 7 7 C 1.46901 * 111.00153 * 270.38015 * 6 2 1 8 8 H 1.09002 * 109.46711 * 39.78780 * 7 6 2 9 9 C 1.52995 * 109.47223 * 159.78711 * 7 6 2 10 10 C 1.50697 * 109.47030 * 279.79570 * 7 6 2 11 11 C 1.38299 * 119.92971 * 319.71772 * 10 7 6 12 12 C 1.38100 * 120.06887 * 179.72848 * 11 10 7 13 13 C 1.38887 * 119.93041 * 0.53342 * 12 11 10 14 14 O 1.35749 * 120.06733 * 179.72766 * 13 12 11 15 15 C 1.34836 * 116.99429 * 185.80219 * 14 13 12 16 16 H 1.07994 * 120.00225 * 5.45568 * 15 14 13 17 17 C 1.38655 * 119.99732 * 185.46337 * 15 14 13 18 18 N 1.31559 * 119.99951 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00005 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47343 * 59.99652 * 19 17 15 21 21 H 1.48503 * 109.47395 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.46920 * 299.99820 * 19 17 15 23 23 C 1.38883 * 119.85968 * 359.74025 * 13 12 11 24 24 C 1.38104 * 119.92920 * 0.02562 * 23 13 12 25 25 H 1.09002 * 109.47084 * 305.00112 * 1 2 3 26 26 H 1.09003 * 109.46765 * 64.99307 * 1 2 3 27 27 H 1.09002 * 109.47227 * 184.99635 * 1 2 3 28 28 H 1.08998 * 109.46952 * 59.99728 * 4 2 1 29 29 H 1.09001 * 109.46991 * 300.00075 * 4 2 1 30 30 H 1.00900 * 110.99431 * 146.42902 * 6 2 1 31 31 H 1.08993 * 109.47382 * 295.01252 * 9 7 6 32 32 H 1.09008 * 109.46539 * 55.01126 * 9 7 6 33 33 H 1.09003 * 109.47354 * 175.00414 * 9 7 6 34 34 H 1.07998 * 119.96817 * 359.97438 * 11 10 7 35 35 H 1.08005 * 120.03997 * 180.27494 * 12 11 10 36 36 H 0.96999 * 120.00024 * 180.02562 * 18 17 15 37 37 H 1.07992 * 120.03365 * 179.97438 * 23 13 12 38 38 H 1.08000 * 119.95981 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 9 3.4390 -0.7217 -1.2489 6 7 2.0196 -0.6925 1.1995 7 6 2.1865 0.2454 2.3177 8 1 1.3602 0.9564 2.3219 9 6 2.1987 -0.5301 3.6365 10 6 3.4878 0.9888 2.1598 11 6 4.6162 0.3194 1.7226 12 6 5.8089 0.9990 1.5715 13 6 5.8771 2.3538 1.8698 14 8 7.0494 3.0233 1.7276 15 6 7.0774 4.3043 2.1474 16 1 6.2214 4.7256 2.6535 17 6 8.2051 5.0809 1.9291 18 7 9.2480 4.5676 1.3129 19 14 8.2437 6.8558 2.5101 20 1 8.0580 6.8988 3.9828 21 1 9.5524 7.4634 2.1587 22 1 7.1515 7.6161 1.8510 23 6 4.7435 3.0219 2.3141 24 6 3.5526 2.3376 2.4585 25 1 -0.3633 0.5895 0.8418 26 1 -0.3633 0.4344 -0.9314 27 1 -0.3634 -1.0238 0.0895 28 1 1.6767 -0.2074 -2.1392 29 1 1.6767 -1.7489 -1.2492 30 1 2.8801 -1.1833 1.0077 31 1 1.2258 -0.9958 3.7932 32 1 2.9684 -1.3010 3.5974 33 1 2.4110 0.1538 4.4583 34 1 4.5638 -0.7351 1.4952 35 1 6.6888 0.4767 1.2258 36 1 10.0371 5.1108 1.1606 37 1 4.7934 4.0752 2.5472 38 1 2.6709 2.8566 2.8043 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702560650.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:26 Heat of formation + Delta-G solvation = -83.308379 kcal Electronic energy + Delta-G solvation = -20326.778925 eV Core-core repulsion = 17083.002418 eV Total energy + Delta-G solvation = -3243.776507 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.138 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.59764 -40.97563 -39.31221 -37.23081 -34.48147 -33.82703 -31.90410 -29.78464 -29.19180 -27.38298 -27.31088 -24.06856 -23.54671 -21.85720 -21.37598 -19.79102 -18.89887 -17.49828 -17.31123 -16.81728 -16.42343 -16.29184 -16.00772 -15.56816 -15.51517 -15.18556 -14.73721 -14.33393 -14.29456 -14.03130 -13.57703 -13.46956 -13.29332 -13.01371 -12.86798 -12.63881 -12.50165 -12.38205 -12.16583 -12.02483 -11.94255 -11.71253 -11.48599 -11.21913 -10.79499 -9.83714 -9.50176 -8.92605 -8.49194 -6.17914 0.54504 0.64924 1.33126 1.44100 1.49889 2.16194 2.78031 3.10674 3.17803 3.46236 3.61569 3.92548 3.99492 4.06079 4.12039 4.14083 4.27762 4.41712 4.51711 4.57348 4.61547 4.70178 4.84196 4.93398 5.00789 5.02469 5.05586 5.10949 5.17080 5.25411 5.38536 5.45303 5.55020 5.64330 5.68037 5.99559 6.12271 6.17340 6.38007 6.94977 7.75780 8.73998 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.026983 B = 0.004432 C = 0.004231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.432223 B = 6315.559270 C = 6616.684098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.046 3.954 3 H 0.038 0.962 4 C 0.048 3.952 5 F -0.238 7.238 6 N -0.670 5.670 7 C 0.142 3.858 8 H 0.090 0.910 9 C -0.129 4.129 10 C -0.186 4.186 11 C -0.057 4.057 12 C -0.202 4.202 13 C 0.112 3.888 14 O -0.233 6.233 15 C -0.416 4.416 16 H 0.101 0.899 17 C -0.023 4.023 18 N -0.921 5.921 19 Si 1.020 2.980 20 H -0.257 1.257 21 H -0.271 1.271 22 H -0.257 1.257 23 C -0.240 4.240 24 C -0.064 4.064 25 H 0.058 0.942 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.096 0.904 29 H 0.101 0.899 30 H 0.340 0.660 31 H 0.075 0.925 32 H 0.050 0.950 33 H 0.056 0.944 34 H 0.135 0.865 35 H 0.108 0.892 36 H 0.273 0.727 37 H 0.119 0.881 38 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.087 -8.531 -0.439 20.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.064 4.064 3 H 0.056 0.944 4 C -0.007 4.007 5 F -0.219 7.219 6 N -0.302 5.302 7 C 0.032 3.968 8 H 0.108 0.892 9 C -0.187 4.187 10 C -0.188 4.188 11 C -0.076 4.076 12 C -0.221 4.221 13 C 0.062 3.938 14 O -0.140 6.140 15 C -0.492 4.492 16 H 0.118 0.882 17 C -0.220 4.220 18 N -0.559 5.559 19 Si 0.838 3.162 20 H -0.181 1.181 21 H -0.195 1.195 22 H -0.181 1.181 23 C -0.259 4.259 24 C -0.082 4.082 25 H 0.077 0.923 26 H 0.090 0.910 27 H 0.091 0.909 28 H 0.114 0.886 29 H 0.119 0.881 30 H 0.161 0.839 31 H 0.094 0.906 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.152 0.848 35 H 0.126 0.874 36 H 0.082 0.918 37 H 0.137 0.863 38 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -19.278 -8.774 -0.409 21.185 hybrid contribution 1.741 1.396 -0.229 2.244 sum -17.537 -7.377 -0.638 19.036 Atomic orbital electron populations 1.21670 0.91452 1.03239 1.02364 1.22196 0.98170 0.96421 0.89620 0.94422 1.22543 0.74458 1.04132 0.99517 1.92760 1.33211 1.98206 1.97752 1.61024 1.36004 1.27682 1.05493 1.20432 0.91717 0.92565 0.92060 0.89201 1.21704 1.02571 0.99737 0.94658 1.20554 0.97380 0.94484 1.06405 1.20605 0.90842 0.99211 0.96919 1.20385 0.99891 0.91690 1.10129 1.19929 0.86527 0.92830 0.94550 1.83955 1.29610 1.26340 1.74063 1.21776 1.03691 0.85677 1.38028 0.88207 1.26620 0.93796 1.05075 0.96521 1.70184 1.05287 1.39198 1.41231 0.84640 0.78552 0.73777 0.79183 1.18101 1.19525 1.18118 1.21263 0.93702 1.00907 1.10053 1.20973 0.96340 0.94026 0.96871 0.92321 0.90995 0.90936 0.88574 0.88057 0.83946 0.90616 0.93090 0.92464 0.84756 0.87406 0.91789 0.86342 0.84102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.84 9.45 71.98 0.68 -1.16 16 2 C 0.05 0.92 2.79 44.91 0.13 1.05 16 3 H 0.04 0.95 7.41 -2.39 -0.02 0.93 16 4 C 0.05 0.89 7.03 71.98 0.51 1.40 16 5 F -0.24 -6.60 16.66 44.97 0.75 -5.85 16 6 N -0.67 -14.36 6.03 -473.31 -2.85 -17.22 16 7 C 0.14 3.31 2.68 44.17 0.12 3.42 16 8 H 0.09 1.92 7.40 -2.39 -0.02 1.91 16 9 C -0.13 -2.66 9.49 71.98 0.68 -1.98 16 10 C -0.19 -5.87 4.37 -19.84 -0.09 -5.95 16 11 C -0.06 -2.03 9.16 22.25 0.20 -1.83 16 12 C -0.20 -9.08 9.99 22.39 0.22 -8.85 16 13 C 0.11 5.79 6.65 22.58 0.15 5.94 16 14 O -0.23 -14.46 9.76 -22.79 -0.22 -14.69 16 15 C -0.42 -24.74 9.44 67.92 0.64 -24.09 16 16 H 0.10 5.44 5.30 -2.91 -0.02 5.42 16 17 C -0.02 -1.31 5.49 84.83 0.47 -0.84 16 18 N -0.92 -57.52 13.67 21.61 0.30 -57.23 16 19 Si 1.02 43.33 29.55 68.60 2.03 45.35 16 20 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 21 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 22 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 23 C -0.24 -10.71 9.13 22.39 0.20 -10.51 16 24 C -0.06 -2.22 9.66 22.25 0.21 -2.00 16 25 H 0.06 0.86 7.79 -2.39 -0.02 0.84 16 26 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.34 7.96 5.49 -89.69 -0.49 7.47 16 31 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 33 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.13 4.03 6.51 -2.91 -0.02 4.01 16 35 H 0.11 4.89 8.06 -2.91 -0.02 4.87 16 36 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 37 H 0.12 5.36 5.72 -2.91 -0.02 5.34 16 38 H 0.14 3.91 8.03 -2.91 -0.02 3.88 16 Total: -1.00 -71.55 319.32 4.70 -66.85 By element: Atomic # 1 Polarization: 27.62 SS G_CDS: 0.57 Total: 28.19 kcal Atomic # 6 Polarization: -49.54 SS G_CDS: 4.13 Total: -45.41 kcal Atomic # 7 Polarization: -71.89 SS G_CDS: -2.56 Total: -74.44 kcal Atomic # 8 Polarization: -14.46 SS G_CDS: -0.22 Total: -14.69 kcal Atomic # 9 Polarization: -6.60 SS G_CDS: 0.75 Total: -5.85 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.35 kcal Total: -71.55 4.70 -66.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702560650.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.453 kcal (2) G-P(sol) polarization free energy of solvation -71.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds