Wall clock time and date at job start Mon Mar 30 2020 06:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.46653 * 2 1 4 4 H 1.08995 * 109.47626 * 55.00302 * 3 2 1 5 5 C 1.50707 * 109.46791 * 175.00062 * 3 2 1 6 6 H 1.07996 * 120.00063 * 119.99740 * 5 3 2 7 7 C 1.37878 * 119.99908 * 299.99954 * 5 3 2 8 8 N 1.31504 * 120.00346 * 180.02562 * 7 5 3 9 9 Si 1.86806 * 119.99786 * 359.97438 * 7 5 3 10 10 H 1.48504 * 109.46820 * 90.00347 * 9 7 5 11 11 H 1.48497 * 109.47184 * 209.99686 * 9 7 5 12 12 H 1.48496 * 109.47210 * 330.00383 * 9 7 5 13 13 N 1.46497 * 109.47152 * 294.99569 * 3 2 1 14 14 C 1.33872 * 122.76512 * 300.02573 * 13 3 2 15 15 O 1.21233 * 125.39808 * 0.02840 * 14 13 3 16 16 C 1.51311 * 109.20933 * 179.75759 * 14 13 3 17 17 C 1.54226 * 103.55422 * 0.24888 * 16 14 13 18 18 C 1.52997 * 110.61010 * 118.51923 * 17 16 14 19 19 C 1.53005 * 110.60331 * 241.32550 * 17 16 14 20 20 C 1.53004 * 109.47027 * 179.97438 * 19 17 16 21 21 C 1.52995 * 109.47397 * 299.99692 * 19 17 16 22 22 C 1.33877 * 122.76044 * 120.24282 * 13 3 2 23 23 O 1.21223 * 125.39865 * 359.97210 * 22 13 3 24 24 H 1.09001 * 109.47084 * 60.00279 * 1 2 3 25 25 H 1.08999 * 109.47317 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47284 * 299.99954 * 1 2 3 27 27 H 1.08995 * 109.47284 * 240.00046 * 2 1 3 28 28 H 1.09001 * 109.46639 * 120.00017 * 2 1 3 29 29 H 0.97006 * 120.00477 * 180.02562 * 8 7 5 30 30 H 1.08999 * 110.60546 * 118.76366 * 16 14 13 31 31 H 1.09001 * 110.61015 * 241.56985 * 16 14 13 32 32 H 1.08996 * 109.47475 * 60.69567 * 18 17 16 33 33 H 1.08998 * 109.47253 * 180.70093 * 18 17 16 34 34 H 1.08998 * 109.46894 * 300.69794 * 18 17 16 35 35 H 1.08998 * 109.47308 * 59.99995 * 19 17 16 36 36 H 1.08998 * 109.46831 * 60.00008 * 20 19 17 37 37 H 1.09000 * 109.46996 * 180.02562 * 20 19 17 38 38 H 1.09002 * 109.47276 * 300.00072 * 20 19 17 39 39 H 1.08998 * 109.47139 * 300.00407 * 21 19 17 40 40 H 1.09005 * 109.46881 * 60.00018 * 21 19 17 41 41 H 1.09000 * 109.47394 * 179.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8785 1.2280 8 7 5.4539 0.8805 1.3363 9 14 3.0962 0.1101 2.5707 10 1 2.8744 -1.3260 2.2646 11 1 3.7940 0.2360 3.8755 12 1 1.7880 0.8094 2.6394 13 7 1.6524 2.0974 -1.2518 14 6 2.0419 1.6527 -2.4529 15 8 2.7416 0.6824 -2.6495 16 6 1.4648 2.5489 -3.5268 17 6 0.6711 3.6037 -2.7293 18 6 1.2353 5.0039 -2.9783 19 6 -0.8136 3.5504 -3.0950 20 6 -1.5754 4.6051 -2.2899 21 6 -0.9810 3.8301 -4.5898 22 6 0.8831 3.1925 -1.2886 23 8 0.4247 3.7614 -0.3213 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 5.8770 0.4820 2.1130 30 1 2.2616 3.0217 -4.1009 31 1 0.8036 1.9838 -4.1838 32 1 1.1559 5.2444 -4.0384 33 1 0.6697 5.7322 -2.3971 34 1 2.2823 5.0326 -2.6766 35 1 -1.2095 2.5615 -2.8639 36 1 -1.1796 5.5941 -2.5207 37 1 -2.6332 4.5668 -2.5501 38 1 -1.4561 4.4054 -1.2250 39 1 -0.5852 4.8190 -4.8210 40 1 -0.4384 3.0784 -5.1631 41 1 -2.0387 3.7917 -4.8505 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054178918.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:31 Heat of formation + Delta-G solvation = -74.602112 kcal Electronic energy + Delta-G solvation = -22335.477911 eV Core-core repulsion = 19215.539241 eV Total energy + Delta-G solvation = -3119.938670 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.70011 -38.15171 -36.99809 -35.46140 -33.90295 -32.05025 -30.88923 -28.48770 -27.68097 -26.75431 -24.72541 -22.99122 -22.13128 -21.61851 -19.23731 -18.40151 -16.93126 -16.57105 -16.02809 -15.80980 -15.06118 -14.64462 -14.42882 -13.96193 -13.85058 -13.40879 -13.27529 -12.90780 -12.76522 -12.71079 -12.42795 -12.25603 -12.05575 -11.97184 -11.83859 -11.49463 -11.35849 -11.20409 -10.86490 -10.79660 -10.69478 -10.54097 -10.13338 -9.79602 -9.72117 -9.27500 -9.12851 -8.70347 -8.51188 -6.16170 -4.17504 2.12099 3.21520 3.28349 3.33345 3.33617 3.40421 4.26936 4.30910 4.50334 4.57967 4.73907 4.98493 5.12147 5.16137 5.26135 5.38543 5.53536 5.60938 5.62372 5.69993 5.75639 5.79514 5.81033 5.85666 5.91125 5.91929 6.01984 6.08732 6.27938 6.33755 6.41373 6.45940 6.48042 6.58995 6.83764 7.05950 7.41832 7.79053 8.04047 8.31384 8.57837 8.84742 9.41127 10.96603 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.026380 B = 0.006985 C = 0.006710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.156565 B = 4007.487733 C = 4171.707284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.147 4.147 3 C 0.231 3.769 4 H 0.063 0.937 5 C -0.523 4.523 6 H 0.079 0.921 7 C 0.079 3.921 8 N -0.889 5.889 9 Si 0.879 3.121 10 H -0.274 1.274 11 H -0.291 1.291 12 H -0.262 1.262 13 N -0.546 5.546 14 C 0.524 3.476 15 O -0.466 6.466 16 C -0.157 4.157 17 C -0.094 4.094 18 C -0.134 4.134 19 C -0.073 4.073 20 C -0.157 4.157 21 C -0.148 4.148 22 C 0.532 3.468 23 O -0.489 6.489 24 H 0.043 0.957 25 H 0.047 0.953 26 H 0.049 0.951 27 H 0.078 0.922 28 H 0.063 0.937 29 H 0.267 0.733 30 H 0.114 0.886 31 H 0.113 0.887 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.059 0.941 37 H 0.052 0.948 38 H 0.074 0.926 39 H 0.061 0.939 40 H 0.059 0.941 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.285 5.660 -10.627 17.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.185 4.185 3 C 0.131 3.869 4 H 0.080 0.920 5 C -0.561 4.561 6 H 0.097 0.903 7 C -0.124 4.124 8 N -0.526 5.526 9 Si 0.709 3.291 10 H -0.201 1.201 11 H -0.219 1.219 12 H -0.187 1.187 13 N -0.286 5.286 14 C 0.311 3.689 15 O -0.336 6.336 16 C -0.197 4.197 17 C -0.097 4.097 18 C -0.192 4.192 19 C -0.092 4.092 20 C -0.214 4.214 21 C -0.205 4.205 22 C 0.320 3.680 23 O -0.362 6.362 24 H 0.062 0.938 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.097 0.903 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.132 0.868 31 H 0.131 0.869 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.078 0.922 37 H 0.071 0.929 38 H 0.093 0.907 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.958 5.353 -10.052 17.251 hybrid contribution -0.271 -0.581 0.832 1.050 sum -13.229 4.772 -9.220 16.816 Atomic orbital electron populations 1.21832 0.97543 1.00508 1.00943 1.22308 0.93717 0.99428 1.03026 1.19603 0.97290 0.89289 0.80762 0.91965 1.20965 0.87980 1.39699 1.07493 0.90256 1.24811 0.94894 0.95210 0.97534 1.69856 1.08588 1.44478 1.29689 0.86975 0.80856 0.80044 0.81260 1.20085 1.21863 1.18730 1.46769 1.44608 1.26689 1.10504 1.20489 0.79367 0.84844 0.84173 1.90740 1.33263 1.25708 1.83901 1.22750 1.01563 0.97082 0.98329 1.21503 0.97578 0.97707 0.92958 1.21812 1.01459 0.93367 1.02518 1.20963 0.91489 1.00507 0.96254 1.22010 0.99036 0.98552 1.01806 1.21924 1.01771 1.02195 0.94630 1.20483 0.76823 0.79505 0.91162 1.90647 1.48904 1.55711 1.40923 0.93830 0.93405 0.93139 0.90335 0.91858 0.92302 0.86810 0.86900 0.90973 0.90893 0.91813 0.90921 0.92165 0.92865 0.90726 0.92000 0.92231 0.92376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 9.80 37.16 0.36 -2.43 16 2 C -0.15 -3.32 4.83 -26.73 -0.13 -3.45 16 3 C 0.23 5.64 1.67 -69.08 -0.12 5.53 16 4 H 0.06 1.60 6.47 -51.93 -0.34 1.27 16 5 C -0.52 -15.03 8.54 -34.44 -0.29 -15.33 16 6 H 0.08 2.51 7.89 -52.49 -0.41 2.09 16 7 C 0.08 2.30 5.45 -17.82 -0.10 2.21 16 8 N -0.89 -27.36 13.96 55.43 0.77 -26.59 16 9 Si 0.88 21.93 24.41 -169.99 -4.15 17.78 16 10 H -0.27 -6.62 6.83 56.52 0.39 -6.24 16 11 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 12 H -0.26 -6.29 6.53 56.52 0.37 -5.92 16 13 N -0.55 -11.41 1.92 -109.49 -0.21 -11.62 16 14 C 0.52 10.19 7.29 -11.09 -0.08 10.11 16 15 O -0.47 -10.76 15.68 5.60 0.09 -10.68 16 16 C -0.16 -2.07 5.77 -26.94 -0.16 -2.22 16 17 C -0.09 -1.24 0.49 -154.72 -0.08 -1.31 16 18 C -0.13 -1.52 7.72 37.16 0.29 -1.23 16 19 C -0.07 -0.79 2.17 -90.62 -0.20 -0.99 16 20 C -0.16 -1.72 8.55 37.16 0.32 -1.41 16 21 C -0.15 -1.18 8.67 37.16 0.32 -0.86 16 22 C 0.53 9.82 6.62 -11.09 -0.07 9.75 16 23 O -0.49 -10.10 15.20 5.61 0.09 -10.02 16 24 H 0.04 0.75 7.75 -51.93 -0.40 0.35 16 25 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 27 H 0.08 1.84 6.49 -51.93 -0.34 1.50 16 28 H 0.06 1.50 3.22 -51.93 -0.17 1.33 16 29 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 30 H 0.11 1.29 7.74 -51.93 -0.40 0.89 16 31 H 0.11 1.19 6.46 -51.93 -0.34 0.86 16 32 H 0.07 0.61 6.72 -51.93 -0.35 0.26 16 33 H 0.07 0.82 6.37 -51.93 -0.33 0.49 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.06 0.60 6.42 -51.93 -0.33 0.27 16 37 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.07 1.03 6.09 -51.93 -0.32 0.71 16 39 H 0.06 0.45 6.64 -51.93 -0.34 0.10 16 40 H 0.06 0.44 6.53 -51.93 -0.34 0.10 16 41 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 311.15 15.07 4.69 4.69 Total: -1.00 -33.02 311.15 -4.78 -37.80 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -6.13 Total: 0.28 kcal Atomic # 6 Polarization: -1.72 SS G_CDS: 0.07 Total: -1.64 kcal Atomic # 7 Polarization: -38.77 SS G_CDS: 0.56 Total: -38.21 kcal Atomic # 8 Polarization: -20.87 SS G_CDS: 0.17 Total: -20.69 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.15 Total: 17.78 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -33.02 -4.78 -37.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054178918.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.804 kcal (2) G-P(sol) polarization free energy of solvation -33.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds