Wall clock time and date at job start Mon Mar 30 2020 06:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.46653 * 2 1 4 4 H 1.08995 * 109.47626 * 55.00302 * 3 2 1 5 5 C 1.50707 * 109.46791 * 175.00062 * 3 2 1 6 6 H 1.07996 * 120.00063 * 119.99740 * 5 3 2 7 7 C 1.37878 * 119.99908 * 299.99954 * 5 3 2 8 8 N 1.31504 * 120.00346 * 180.02562 * 7 5 3 9 9 Si 1.86806 * 119.99786 * 359.97438 * 7 5 3 10 10 H 1.48504 * 109.46820 * 90.00347 * 9 7 5 11 11 H 1.48497 * 109.47184 * 209.99686 * 9 7 5 12 12 H 1.48496 * 109.47210 * 330.00383 * 9 7 5 13 13 N 1.46497 * 109.47152 * 294.99569 * 3 2 1 14 14 C 1.33872 * 122.76512 * 300.02573 * 13 3 2 15 15 O 1.21233 * 125.39808 * 0.02840 * 14 13 3 16 16 C 1.51311 * 109.20933 * 179.75759 * 14 13 3 17 17 C 1.54226 * 103.55422 * 0.24888 * 16 14 13 18 18 C 1.52997 * 110.61010 * 118.51923 * 17 16 14 19 19 C 1.53005 * 110.60331 * 241.32550 * 17 16 14 20 20 C 1.53004 * 109.47027 * 179.97438 * 19 17 16 21 21 C 1.52995 * 109.47397 * 299.99692 * 19 17 16 22 22 C 1.33877 * 122.76044 * 120.24282 * 13 3 2 23 23 O 1.21223 * 125.39865 * 359.97210 * 22 13 3 24 24 H 1.09001 * 109.47084 * 60.00279 * 1 2 3 25 25 H 1.08999 * 109.47317 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47284 * 299.99954 * 1 2 3 27 27 H 1.08995 * 109.47284 * 240.00046 * 2 1 3 28 28 H 1.09001 * 109.46639 * 120.00017 * 2 1 3 29 29 H 0.97006 * 120.00477 * 180.02562 * 8 7 5 30 30 H 1.08999 * 110.60546 * 118.76366 * 16 14 13 31 31 H 1.09001 * 110.61015 * 241.56985 * 16 14 13 32 32 H 1.08996 * 109.47475 * 60.69567 * 18 17 16 33 33 H 1.08998 * 109.47253 * 180.70093 * 18 17 16 34 34 H 1.08998 * 109.46894 * 300.69794 * 18 17 16 35 35 H 1.08998 * 109.47308 * 59.99995 * 19 17 16 36 36 H 1.08998 * 109.46831 * 60.00008 * 20 19 17 37 37 H 1.09000 * 109.46996 * 180.02562 * 20 19 17 38 38 H 1.09002 * 109.47276 * 300.00072 * 20 19 17 39 39 H 1.08998 * 109.47139 * 300.00407 * 21 19 17 40 40 H 1.09005 * 109.46881 * 60.00018 * 21 19 17 41 41 H 1.09000 * 109.47394 * 179.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8785 1.2280 8 7 5.4539 0.8805 1.3363 9 14 3.0962 0.1101 2.5707 10 1 2.8744 -1.3260 2.2646 11 1 3.7940 0.2360 3.8755 12 1 1.7880 0.8094 2.6394 13 7 1.6524 2.0974 -1.2518 14 6 2.0419 1.6527 -2.4529 15 8 2.7416 0.6824 -2.6495 16 6 1.4648 2.5489 -3.5268 17 6 0.6711 3.6037 -2.7293 18 6 1.2353 5.0039 -2.9783 19 6 -0.8136 3.5504 -3.0950 20 6 -1.5754 4.6051 -2.2899 21 6 -0.9810 3.8301 -4.5898 22 6 0.8831 3.1925 -1.2886 23 8 0.4247 3.7614 -0.3213 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 5.8770 0.4820 2.1130 30 1 2.2616 3.0217 -4.1009 31 1 0.8036 1.9838 -4.1838 32 1 1.1559 5.2444 -4.0384 33 1 0.6697 5.7322 -2.3971 34 1 2.2823 5.0326 -2.6766 35 1 -1.2095 2.5615 -2.8639 36 1 -1.1796 5.5941 -2.5207 37 1 -2.6332 4.5668 -2.5501 38 1 -1.4561 4.4054 -1.2250 39 1 -0.5852 4.8190 -4.8210 40 1 -0.4384 3.0784 -5.1631 41 1 -2.0387 3.7917 -4.8505 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054178918.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:31 Heat of formation + Delta-G solvation = -97.111763 kcal Electronic energy + Delta-G solvation = -22336.454002 eV Core-core repulsion = 19215.539241 eV Total energy + Delta-G solvation = -3120.914762 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.12945 -39.66326 -38.27338 -37.16042 -35.49475 -34.10629 -32.05490 -29.90408 -29.00642 -27.72886 -25.98927 -24.88672 -23.54144 -23.05814 -20.62703 -19.78836 -18.93402 -18.22372 -17.48851 -17.13611 -16.73810 -15.95371 -15.79320 -15.53484 -15.20738 -14.99834 -14.64580 -14.52393 -14.16437 -13.94071 -13.78660 -13.63550 -13.27722 -13.11149 -13.00584 -12.79243 -12.71075 -12.54431 -12.36027 -12.07789 -11.97174 -11.79570 -11.64723 -11.52214 -11.37320 -10.90622 -10.88223 -10.61397 -10.36711 -8.43431 -6.49829 0.64310 1.20176 1.26378 1.36043 1.78695 1.95447 2.18690 2.88500 3.12675 3.30247 3.49519 3.70345 4.02086 4.02387 4.12819 4.22904 4.35508 4.41671 4.54822 4.55617 4.65630 4.66210 4.67835 4.89144 4.90449 4.91788 4.92487 4.96441 5.04936 5.09635 5.17265 5.26079 5.29265 5.32279 5.34612 5.58098 5.60463 6.00838 6.22890 6.49265 6.57928 6.95944 7.15494 8.73468 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.026380 B = 0.006985 C = 0.006710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.156565 B = 4007.487733 C = 4171.707284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.143 4.143 3 C 0.233 3.767 4 H 0.047 0.953 5 C -0.529 4.529 6 H 0.031 0.969 7 C 0.021 3.979 8 N -0.937 5.937 9 Si 0.942 3.058 10 H -0.258 1.258 11 H -0.286 1.286 12 H -0.248 1.248 13 N -0.561 5.561 14 C 0.512 3.488 15 O -0.514 6.514 16 C -0.139 4.139 17 C -0.080 4.080 18 C -0.134 4.134 19 C -0.070 4.070 20 C -0.156 4.156 21 C -0.144 4.144 22 C 0.521 3.479 23 O -0.517 6.517 24 H 0.052 0.948 25 H 0.076 0.924 26 H 0.051 0.949 27 H 0.064 0.936 28 H 0.053 0.947 29 H 0.271 0.729 30 H 0.140 0.860 31 H 0.151 0.849 32 H 0.113 0.887 33 H 0.072 0.928 34 H 0.045 0.955 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.040 0.960 39 H 0.074 0.926 40 H 0.071 0.929 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.226 6.067 -12.486 21.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.181 4.181 3 C 0.131 3.869 4 H 0.065 0.935 5 C -0.567 4.567 6 H 0.050 0.950 7 C -0.178 4.178 8 N -0.576 5.576 9 Si 0.768 3.232 10 H -0.184 1.184 11 H -0.213 1.213 12 H -0.172 1.172 13 N -0.301 5.301 14 C 0.303 3.697 15 O -0.388 6.388 16 C -0.178 4.178 17 C -0.083 4.083 18 C -0.191 4.191 19 C -0.089 4.089 20 C -0.213 4.213 21 C -0.201 4.201 22 C 0.312 3.688 23 O -0.392 6.392 24 H 0.071 0.929 25 H 0.095 0.905 26 H 0.070 0.930 27 H 0.083 0.917 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.158 0.842 31 H 0.168 0.832 32 H 0.132 0.868 33 H 0.091 0.909 34 H 0.064 0.936 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.059 0.941 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -15.930 5.789 -11.943 20.734 hybrid contribution 0.701 -0.622 1.383 1.671 sum -15.229 5.167 -10.559 19.239 Atomic orbital electron populations 1.21752 0.94044 1.02605 1.01510 1.22166 0.96785 0.97365 1.01814 1.19241 0.94192 0.90888 0.82602 0.93515 1.21150 0.90346 1.38965 1.06210 0.95020 1.25721 0.96122 0.95786 1.00174 1.70003 1.10596 1.46072 1.30904 0.85945 0.79539 0.79900 0.77844 1.18370 1.21328 1.17221 1.46965 1.45467 1.27687 1.09973 1.21620 0.78323 0.84758 0.85042 1.90707 1.35447 1.28093 1.84568 1.22880 1.02506 0.95847 0.96532 1.21616 0.99764 0.98548 0.88389 1.21897 1.00106 0.91947 1.05184 1.21029 0.88999 1.00305 0.98578 1.21992 1.00458 0.99172 0.99680 1.21922 1.03111 1.03320 0.91704 1.21551 0.75481 0.78237 0.93520 1.90625 1.49732 1.56163 1.42688 0.92859 0.90513 0.92996 0.91707 0.92905 0.92007 0.84250 0.83168 0.86809 0.90917 0.93621 0.91397 0.91150 0.90987 0.94137 0.90692 0.91024 0.91038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.01 9.80 71.98 0.71 -4.30 16 2 C -0.14 -6.48 4.83 30.60 0.15 -6.33 16 3 C 0.23 11.69 1.67 44.25 0.07 11.77 16 4 H 0.05 2.47 6.47 -2.39 -0.02 2.46 16 5 C -0.53 -31.96 8.54 25.60 0.22 -31.74 16 6 H 0.03 2.15 7.89 -2.91 -0.02 2.12 16 7 C 0.02 1.27 5.45 84.66 0.46 1.73 16 8 N -0.94 -60.22 13.96 21.45 0.30 -59.92 16 9 Si 0.94 46.13 24.41 68.60 1.67 47.80 16 10 H -0.26 -11.90 6.83 99.48 0.68 -11.22 16 11 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 12 H -0.25 -11.46 6.53 99.48 0.65 -10.82 16 13 N -0.56 -23.81 1.92 -738.14 -1.42 -25.22 16 14 C 0.51 19.93 7.29 87.99 0.64 20.57 16 15 O -0.51 -24.46 15.68 -2.88 -0.05 -24.51 16 16 C -0.14 -3.24 5.77 30.46 0.18 -3.07 16 17 C -0.08 -1.91 0.49 -52.32 -0.03 -1.93 16 18 C -0.13 -2.66 7.72 71.98 0.56 -2.10 16 19 C -0.07 -1.26 2.17 -10.79 -0.02 -1.29 16 20 C -0.16 -3.00 8.55 71.98 0.62 -2.39 16 21 C -0.14 -1.51 8.67 71.98 0.62 -0.88 16 22 C 0.52 19.13 6.62 87.99 0.58 19.71 16 23 O -0.52 -21.69 15.20 -2.86 -0.04 -21.74 16 24 H 0.05 1.75 7.75 -2.39 -0.02 1.73 16 25 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 26 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 27 H 0.06 3.08 6.49 -2.39 -0.02 3.07 16 28 H 0.05 2.47 3.22 -2.39 -0.01 2.46 16 29 H 0.27 16.14 8.31 -92.70 -0.77 15.37 16 30 H 0.14 2.65 7.74 -2.39 -0.02 2.63 16 31 H 0.15 2.47 6.46 -2.39 -0.02 2.45 16 32 H 0.11 1.34 6.72 -2.39 -0.02 1.32 16 33 H 0.07 1.47 6.37 -2.39 -0.02 1.45 16 34 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.07 1.19 6.42 -2.39 -0.02 1.18 16 37 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.04 1.07 6.09 -2.39 -0.01 1.05 16 39 H 0.07 0.63 6.64 -2.39 -0.02 0.61 16 40 H 0.07 0.62 6.53 -2.38 -0.02 0.60 16 41 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 Total: -1.00 -78.39 311.15 6.16 -72.23 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: 0.94 Total: 11.60 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: 4.75 Total: -0.24 kcal Atomic # 7 Polarization: -84.03 SS G_CDS: -1.12 Total: -85.15 kcal Atomic # 8 Polarization: -46.15 SS G_CDS: -0.09 Total: -46.24 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 1.67 Total: 47.80 kcal Total: -78.39 6.16 -72.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054178918.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.881 kcal (2) G-P(sol) polarization free energy of solvation -78.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds