Wall clock time and date at job start Mon Mar 30 2020 06:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46862 * 2 1 4 4 H 1.09007 * 109.47256 * 305.33715 * 3 2 1 5 5 C 1.50704 * 109.47102 * 185.33915 * 3 2 1 6 6 H 1.07999 * 120.00047 * 274.96972 * 5 3 2 7 7 C 1.37878 * 120.00140 * 94.97047 * 5 3 2 8 8 N 1.31511 * 119.99860 * 184.82265 * 7 5 3 9 9 Si 1.86801 * 119.99875 * 4.82219 * 7 5 3 10 10 H 1.48495 * 109.47473 * 84.86182 * 9 7 5 11 11 H 1.48507 * 109.46768 * 204.86254 * 9 7 5 12 12 H 1.48504 * 109.47106 * 324.85584 * 9 7 5 13 13 N 1.46501 * 109.47368 * 65.33612 * 3 2 1 14 14 C 1.33874 * 122.75890 * 60.00134 * 13 3 2 15 15 O 1.21224 * 125.39843 * 359.96259 * 14 13 3 16 16 C 1.51320 * 109.20525 * 180.02562 * 14 13 3 17 17 C 1.54228 * 103.55375 * 359.97438 * 16 14 13 18 18 C 1.52999 * 110.74002 * 118.58093 * 17 16 14 19 19 C 1.53002 * 110.60706 * 241.48707 * 17 16 14 20 20 C 1.52998 * 109.47077 * 175.59467 * 19 17 16 21 21 C 1.52992 * 109.47383 * 55.58654 * 19 17 16 22 22 C 1.33875 * 122.76183 * 240.00158 * 13 3 2 23 23 O 1.21230 * 125.39704 * 359.97438 * 22 13 3 24 24 H 1.08995 * 109.47476 * 60.00434 * 1 2 3 25 25 H 1.09004 * 109.46787 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47390 * 299.99967 * 1 2 3 27 27 H 1.08998 * 109.47390 * 240.00033 * 2 1 3 28 28 H 1.08995 * 109.47476 * 119.99566 * 2 1 3 29 29 H 0.96999 * 119.99915 * 180.02562 * 8 7 5 30 30 H 1.09005 * 110.60447 * 241.48270 * 16 14 13 31 31 H 1.08994 * 110.60797 * 118.51380 * 16 14 13 32 32 H 1.08995 * 109.47531 * 182.93729 * 18 17 16 33 33 H 1.09001 * 109.47319 * 302.94293 * 18 17 16 34 34 H 1.09007 * 109.46887 * 62.93984 * 18 17 16 35 35 H 1.09002 * 109.46743 * 295.59025 * 19 17 16 36 36 H 1.09002 * 109.46973 * 299.99417 * 20 19 17 37 37 H 1.08995 * 109.47960 * 59.99537 * 20 19 17 38 38 H 1.09001 * 109.47192 * 180.02562 * 20 19 17 39 39 H 1.09001 * 109.47400 * 179.97438 * 21 19 17 40 40 H 1.08998 * 109.47407 * 300.00572 * 21 19 17 41 41 H 1.09002 * 109.46878 * 60.00454 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6006 1.9833 -0.8384 5 6 3.5412 1.4447 -0.1322 6 1 4.1607 1.3355 0.7456 7 6 4.1237 1.5859 -1.3739 8 7 5.4292 1.4929 -1.5021 9 14 3.0585 1.9094 -2.8739 10 1 2.7924 3.3659 -2.9874 11 1 3.7642 1.4387 -4.0929 12 1 1.7722 1.1805 -2.7342 13 7 1.6593 2.0951 1.2552 14 6 2.0558 1.6482 2.4532 15 8 2.7568 0.6778 2.6439 16 6 1.4889 2.5455 3.5318 17 6 0.6881 3.5999 2.7408 18 6 -0.7942 3.5484 3.1163 19 6 1.2551 5.0002 2.9834 20 6 0.5144 6.0097 2.1042 21 6 2.7444 5.0151 2.6334 22 6 0.8864 3.1873 1.2985 23 8 0.4195 3.7559 0.3350 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8900 29 1 5.8391 1.5927 -2.3756 30 1 2.2912 3.0189 4.0979 31 1 0.8318 1.9816 4.1938 32 1 -1.3479 4.2644 2.5090 33 1 -1.1798 2.5448 2.9369 34 1 -0.9108 3.7994 4.1706 35 1 1.1257 5.2678 4.0321 36 1 0.6438 5.7420 1.0555 37 1 -0.5466 5.9991 2.3535 38 1 0.9186 7.0072 2.2767 39 1 3.1482 6.0127 2.8057 40 1 3.2721 4.2958 3.2597 41 1 2.8738 4.7474 1.5847 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054178919.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:34 Heat of formation + Delta-G solvation = -83.485916 kcal Electronic energy + Delta-G solvation = -22579.375488 eV Core-core repulsion = 19459.051587 eV Total energy + Delta-G solvation = -3120.323901 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.71723 -38.10935 -36.72034 -35.36148 -33.62065 -32.11103 -31.14638 -28.80514 -27.55227 -26.27867 -24.28414 -23.07562 -22.01656 -21.66188 -19.40809 -18.23761 -17.06883 -16.46245 -16.22296 -15.26789 -14.91542 -14.54316 -14.19453 -13.99511 -13.77029 -13.50541 -13.12768 -12.95929 -12.80014 -12.43312 -12.25714 -12.10786 -12.02230 -11.96775 -11.77498 -11.65814 -11.11370 -10.94129 -10.88412 -10.67358 -10.58737 -10.48650 -10.31596 -9.88761 -9.79198 -9.28513 -9.06264 -8.65400 -8.49211 -6.20725 -4.23618 2.16003 3.20411 3.30912 3.35200 3.37543 3.47903 4.30620 4.32479 4.51774 4.68315 4.79403 5.07912 5.13819 5.17877 5.42598 5.50884 5.56944 5.63528 5.78323 5.80204 5.82505 5.83846 5.85683 5.93772 5.98191 6.09076 6.12735 6.23104 6.37127 6.40876 6.49282 6.50995 6.58540 6.69136 7.02956 7.12293 7.41989 7.79289 8.07880 8.35283 8.61004 8.90344 9.38658 10.90949 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.019257 B = 0.008528 C = 0.007969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.666446 B = 3282.677513 C = 3512.919009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.132 4.132 3 C 0.224 3.776 4 H 0.062 0.938 5 C -0.523 4.523 6 H 0.087 0.913 7 C 0.082 3.918 8 N -0.884 5.884 9 Si 0.867 3.133 10 H -0.270 1.270 11 H -0.284 1.284 12 H -0.262 1.262 13 N -0.547 5.547 14 C 0.528 3.472 15 O -0.474 6.474 16 C -0.160 4.160 17 C -0.098 4.098 18 C -0.131 4.131 19 C -0.070 4.070 20 C -0.158 4.158 21 C -0.161 4.161 22 C 0.533 3.467 23 O -0.493 6.493 24 H 0.047 0.953 25 H 0.046 0.954 26 H 0.039 0.961 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.268 0.732 30 H 0.116 0.884 31 H 0.110 0.890 32 H 0.071 0.929 33 H 0.059 0.941 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.056 0.944 38 H 0.053 0.947 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.356 5.561 9.820 16.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.171 4.171 3 C 0.125 3.875 4 H 0.080 0.920 5 C -0.561 4.561 6 H 0.105 0.895 7 C -0.122 4.122 8 N -0.520 5.520 9 Si 0.693 3.307 10 H -0.195 1.195 11 H -0.210 1.210 12 H -0.186 1.186 13 N -0.287 5.287 14 C 0.315 3.685 15 O -0.345 6.345 16 C -0.200 4.200 17 C -0.101 4.101 18 C -0.189 4.189 19 C -0.089 4.089 20 C -0.215 4.215 21 C -0.218 4.218 22 C 0.322 3.678 23 O -0.367 6.367 24 H 0.066 0.934 25 H 0.065 0.935 26 H 0.058 0.942 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.078 0.922 30 H 0.134 0.866 31 H 0.128 0.872 32 H 0.090 0.910 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.099 0.901 36 H 0.095 0.905 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -11.033 5.301 9.209 15.318 hybrid contribution -0.324 0.155 -0.927 0.994 sum -11.357 5.456 8.283 15.079 Atomic orbital electron populations 1.21865 0.98086 1.00311 1.00655 1.22091 0.92961 0.98866 1.03200 1.19625 0.97125 0.89849 0.80887 0.91980 1.21077 0.88246 1.50914 0.95895 0.89511 1.24953 0.94866 0.93885 0.98544 1.69883 1.09451 1.48104 1.24546 0.87011 0.81148 0.79800 0.82761 1.19542 1.20961 1.18644 1.47280 1.43981 1.26706 1.10690 1.20437 0.79170 0.84580 0.84281 1.90715 1.33682 1.25950 1.84193 1.22777 1.01798 0.96977 0.98470 1.21582 0.98100 0.97027 0.93414 1.21754 0.92188 1.02798 1.02117 1.20986 0.95655 0.91682 1.00549 1.22027 0.99711 0.97846 1.01931 1.22033 0.94686 1.02051 1.03053 1.20483 0.76733 0.79582 0.91045 1.90637 1.49184 1.55500 1.41337 0.93367 0.93520 0.94166 0.91125 0.90959 0.92245 0.86628 0.87171 0.90961 0.92200 0.91142 0.90051 0.90506 0.92500 0.92832 0.92091 0.92141 0.91779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.78 9.80 37.16 0.36 -2.41 16 2 C -0.13 -2.91 5.32 -26.73 -0.14 -3.05 16 3 C 0.22 5.41 1.74 -69.08 -0.12 5.29 16 4 H 0.06 1.57 4.57 -51.93 -0.24 1.34 16 5 C -0.52 -14.74 8.62 -34.44 -0.30 -15.04 16 6 H 0.09 2.72 7.10 -52.49 -0.37 2.35 16 7 C 0.08 2.35 5.47 -17.82 -0.10 2.26 16 8 N -0.88 -26.69 13.96 55.43 0.77 -25.92 16 9 Si 0.87 21.57 26.99 -169.99 -4.59 16.98 16 10 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.26 -6.24 6.82 56.52 0.39 -5.85 16 13 N -0.55 -11.43 1.94 -109.48 -0.21 -11.64 16 14 C 0.53 10.27 7.33 -11.08 -0.08 10.19 16 15 O -0.47 -10.83 15.14 5.61 0.08 -10.74 16 16 C -0.16 -2.16 5.78 -26.94 -0.16 -2.31 16 17 C -0.10 -1.33 0.60 -154.72 -0.09 -1.42 16 18 C -0.13 -1.40 8.12 37.16 0.30 -1.10 16 19 C -0.07 -0.85 2.30 -90.62 -0.21 -1.06 16 20 C -0.16 -1.97 8.55 37.16 0.32 -1.65 16 21 C -0.16 -2.28 8.63 37.15 0.32 -1.96 16 22 C 0.53 10.00 5.31 -11.09 -0.06 9.94 16 23 O -0.49 -10.40 14.99 5.60 0.08 -10.32 16 24 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.04 0.70 7.76 -51.93 -0.40 0.29 16 27 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 28 H 0.07 1.64 6.49 -51.93 -0.34 1.30 16 29 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 30 H 0.12 1.38 6.14 -51.93 -0.32 1.06 16 31 H 0.11 1.18 7.75 -51.93 -0.40 0.77 16 32 H 0.07 0.79 6.57 -51.93 -0.34 0.45 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.08 1.20 5.91 -51.93 -0.31 0.90 16 37 H 0.06 0.62 6.55 -51.93 -0.34 0.28 16 38 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.06 0.83 6.27 -51.93 -0.33 0.51 16 41 H 0.06 1.15 7.24 -51.93 -0.38 0.77 16 LS Contribution 317.40 15.07 4.78 4.78 Total: -1.00 -32.26 317.40 -5.32 -37.57 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -6.29 Total: 1.63 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: 0.05 Total: -2.34 kcal Atomic # 7 Polarization: -38.12 SS G_CDS: 0.56 Total: -37.56 kcal Atomic # 8 Polarization: -21.23 SS G_CDS: 0.17 Total: -21.06 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.59 Total: 16.98 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -32.26 -5.32 -37.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054178919.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.912 kcal (2) G-P(sol) polarization free energy of solvation -32.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds