Wall clock time and date at job start Mon Mar 30 2020 06:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46862 * 2 1 4 4 H 1.09007 * 109.47256 * 305.33715 * 3 2 1 5 5 C 1.50704 * 109.47102 * 185.33915 * 3 2 1 6 6 H 1.07999 * 120.00047 * 274.96972 * 5 3 2 7 7 C 1.37878 * 120.00140 * 94.97047 * 5 3 2 8 8 N 1.31511 * 119.99860 * 184.82265 * 7 5 3 9 9 Si 1.86801 * 119.99875 * 4.82219 * 7 5 3 10 10 H 1.48495 * 109.47473 * 84.86182 * 9 7 5 11 11 H 1.48507 * 109.46768 * 204.86254 * 9 7 5 12 12 H 1.48504 * 109.47106 * 324.85584 * 9 7 5 13 13 N 1.46501 * 109.47368 * 65.33612 * 3 2 1 14 14 C 1.33874 * 122.75890 * 60.00134 * 13 3 2 15 15 O 1.21224 * 125.39843 * 359.96259 * 14 13 3 16 16 C 1.51320 * 109.20525 * 180.02562 * 14 13 3 17 17 C 1.54228 * 103.55375 * 359.97438 * 16 14 13 18 18 C 1.52999 * 110.74002 * 118.58093 * 17 16 14 19 19 C 1.53002 * 110.60706 * 241.48707 * 17 16 14 20 20 C 1.52998 * 109.47077 * 175.59467 * 19 17 16 21 21 C 1.52992 * 109.47383 * 55.58654 * 19 17 16 22 22 C 1.33875 * 122.76183 * 240.00158 * 13 3 2 23 23 O 1.21230 * 125.39704 * 359.97438 * 22 13 3 24 24 H 1.08995 * 109.47476 * 60.00434 * 1 2 3 25 25 H 1.09004 * 109.46787 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47390 * 299.99967 * 1 2 3 27 27 H 1.08998 * 109.47390 * 240.00033 * 2 1 3 28 28 H 1.08995 * 109.47476 * 119.99566 * 2 1 3 29 29 H 0.96999 * 119.99915 * 180.02562 * 8 7 5 30 30 H 1.09005 * 110.60447 * 241.48270 * 16 14 13 31 31 H 1.08994 * 110.60797 * 118.51380 * 16 14 13 32 32 H 1.08995 * 109.47531 * 182.93729 * 18 17 16 33 33 H 1.09001 * 109.47319 * 302.94293 * 18 17 16 34 34 H 1.09007 * 109.46887 * 62.93984 * 18 17 16 35 35 H 1.09002 * 109.46743 * 295.59025 * 19 17 16 36 36 H 1.09002 * 109.46973 * 299.99417 * 20 19 17 37 37 H 1.08995 * 109.47960 * 59.99537 * 20 19 17 38 38 H 1.09001 * 109.47192 * 180.02562 * 20 19 17 39 39 H 1.09001 * 109.47400 * 179.97438 * 21 19 17 40 40 H 1.08998 * 109.47407 * 300.00572 * 21 19 17 41 41 H 1.09002 * 109.46878 * 60.00454 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6006 1.9833 -0.8384 5 6 3.5412 1.4447 -0.1322 6 1 4.1607 1.3355 0.7456 7 6 4.1237 1.5859 -1.3739 8 7 5.4292 1.4929 -1.5021 9 14 3.0585 1.9094 -2.8739 10 1 2.7924 3.3659 -2.9874 11 1 3.7642 1.4387 -4.0929 12 1 1.7722 1.1805 -2.7342 13 7 1.6593 2.0951 1.2552 14 6 2.0558 1.6482 2.4532 15 8 2.7568 0.6778 2.6439 16 6 1.4889 2.5455 3.5318 17 6 0.6881 3.5999 2.7408 18 6 -0.7942 3.5484 3.1163 19 6 1.2551 5.0002 2.9834 20 6 0.5144 6.0097 2.1042 21 6 2.7444 5.0151 2.6334 22 6 0.8864 3.1873 1.2985 23 8 0.4195 3.7559 0.3350 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8900 29 1 5.8391 1.5927 -2.3756 30 1 2.2912 3.0189 4.0979 31 1 0.8318 1.9816 4.1938 32 1 -1.3479 4.2644 2.5090 33 1 -1.1798 2.5448 2.9369 34 1 -0.9108 3.7994 4.1706 35 1 1.1257 5.2678 4.0321 36 1 0.6438 5.7420 1.0555 37 1 -0.5466 5.9991 2.3535 38 1 0.9186 7.0072 2.2767 39 1 3.1482 6.0127 2.8057 40 1 3.2721 4.2958 3.2597 41 1 2.8738 4.7474 1.5847 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054178919.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:33 Heat of formation + Delta-G solvation = -104.790809 kcal Electronic energy + Delta-G solvation = -22580.299337 eV Core-core repulsion = 19459.051587 eV Total energy + Delta-G solvation = -3121.247750 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.14977 -39.64379 -38.07389 -37.04813 -35.27562 -34.10695 -32.33096 -30.11375 -29.19170 -27.39944 -25.66715 -24.84926 -23.38325 -23.08553 -20.91747 -19.71006 -19.10961 -18.13074 -17.64205 -16.86892 -16.38687 -15.95924 -15.57964 -15.44569 -15.09666 -14.94355 -14.84493 -14.44829 -14.30414 -14.04157 -13.93257 -13.33544 -13.17820 -13.09205 -13.00127 -12.84802 -12.69708 -12.61087 -12.36506 -12.14847 -11.96539 -11.90287 -11.78566 -11.55563 -11.47093 -10.92684 -10.82118 -10.57653 -10.28521 -8.44685 -6.51603 0.68482 1.20765 1.25082 1.33282 1.83017 2.03351 2.18746 2.91399 3.16552 3.31138 3.53201 3.75376 3.98364 4.10951 4.16426 4.21516 4.30358 4.41209 4.54931 4.60586 4.66728 4.70133 4.73866 4.79727 4.90742 4.95386 4.97906 5.00494 5.05007 5.08075 5.17026 5.21415 5.28961 5.34120 5.41236 5.44965 5.57547 6.00560 6.32904 6.55358 6.62993 7.00067 7.16899 8.71469 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.019257 B = 0.008528 C = 0.007969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.666446 B = 3282.677513 C = 3512.919009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.130 4.130 3 C 0.226 3.774 4 H 0.050 0.950 5 C -0.525 4.525 6 H 0.040 0.960 7 C 0.028 3.972 8 N -0.931 5.931 9 Si 0.927 3.073 10 H -0.273 1.273 11 H -0.272 1.272 12 H -0.245 1.245 13 N -0.561 5.561 14 C 0.515 3.485 15 O -0.520 6.520 16 C -0.143 4.143 17 C -0.085 4.085 18 C -0.129 4.129 19 C -0.065 4.065 20 C -0.157 4.157 21 C -0.162 4.162 22 C 0.523 3.477 23 O -0.522 6.522 24 H 0.047 0.953 25 H 0.074 0.926 26 H 0.048 0.952 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.271 0.729 30 H 0.138 0.862 31 H 0.153 0.847 32 H 0.069 0.931 33 H 0.059 0.941 34 H 0.113 0.887 35 H 0.131 0.869 36 H 0.035 0.965 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.079 0.921 40 H 0.061 0.939 41 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.480 6.710 11.971 19.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.169 4.169 3 C 0.125 3.875 4 H 0.068 0.932 5 C -0.563 4.563 6 H 0.058 0.942 7 C -0.172 4.172 8 N -0.570 5.570 9 Si 0.750 3.250 10 H -0.198 1.198 11 H -0.197 1.197 12 H -0.168 1.168 13 N -0.301 5.301 14 C 0.306 3.694 15 O -0.395 6.395 16 C -0.182 4.182 17 C -0.088 4.088 18 C -0.186 4.186 19 C -0.083 4.083 20 C -0.214 4.214 21 C -0.219 4.219 22 C 0.314 3.686 23 O -0.398 6.398 24 H 0.066 0.934 25 H 0.093 0.907 26 H 0.067 0.933 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.155 0.845 31 H 0.170 0.830 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.132 0.868 35 H 0.149 0.851 36 H 0.054 0.946 37 H 0.096 0.904 38 H 0.087 0.913 39 H 0.098 0.902 40 H 0.080 0.920 41 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges -14.187 6.466 11.386 19.306 hybrid contribution 0.716 -0.174 -1.542 1.709 sum -13.471 6.292 9.844 17.832 Atomic orbital electron populations 1.21757 0.94657 1.02350 1.01060 1.21958 0.95961 0.96915 1.02018 1.19333 0.94227 0.91349 0.82608 0.93174 1.21181 0.90441 1.50375 0.94348 0.94183 1.25739 0.96014 0.93832 1.01606 1.70010 1.11281 1.50167 1.25507 0.86048 0.80191 0.79480 0.79307 1.19849 1.19695 1.16828 1.47279 1.44929 1.27711 1.10199 1.21534 0.78169 0.84535 0.85174 1.90687 1.35722 1.28269 1.84837 1.22900 1.02783 0.95783 0.96716 1.21723 1.00693 0.97631 0.88787 1.21845 0.89003 1.03040 1.04706 1.21112 0.93458 0.90608 1.03170 1.22005 1.01276 0.98656 0.99439 1.22056 0.97046 1.03101 0.99717 1.21516 0.75396 0.78235 0.93450 1.90616 1.50164 1.55854 1.43147 0.93401 0.90656 0.93265 0.92264 0.92279 0.91978 0.84465 0.82958 0.91161 0.92158 0.86829 0.85075 0.94595 0.90399 0.91271 0.90190 0.92049 0.96885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.94 9.80 71.98 0.71 -4.24 16 2 C -0.13 -5.79 5.32 30.60 0.16 -5.63 16 3 C 0.23 11.24 1.74 44.25 0.08 11.32 16 4 H 0.05 2.60 4.57 -2.38 -0.01 2.59 16 5 C -0.53 -31.32 8.62 25.60 0.22 -31.10 16 6 H 0.04 2.71 7.10 -2.91 -0.02 2.68 16 7 C 0.03 1.68 5.47 84.66 0.46 2.15 16 8 N -0.93 -59.11 13.96 21.45 0.30 -58.81 16 9 Si 0.93 45.94 26.99 68.60 1.85 47.79 16 10 H -0.27 -13.56 7.11 99.48 0.71 -12.85 16 11 H -0.27 -12.86 7.11 99.48 0.71 -12.15 16 12 H -0.24 -11.33 6.82 99.48 0.68 -10.65 16 13 N -0.56 -23.77 1.94 -738.11 -1.43 -25.19 16 14 C 0.51 19.99 7.33 87.99 0.64 20.63 16 15 O -0.52 -24.54 15.14 -2.86 -0.04 -24.59 16 16 C -0.14 -3.35 5.78 30.46 0.18 -3.18 16 17 C -0.09 -2.02 0.60 -52.32 -0.03 -2.06 16 18 C -0.13 -2.08 8.12 71.98 0.58 -1.49 16 19 C -0.07 -1.34 2.30 -10.80 -0.02 -1.37 16 20 C -0.16 -3.45 8.55 71.98 0.62 -2.84 16 21 C -0.16 -4.38 8.63 71.98 0.62 -3.76 16 22 C 0.52 19.29 5.31 87.99 0.47 19.76 16 23 O -0.52 -22.16 14.99 -2.88 -0.04 -22.21 16 24 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 25 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 26 H 0.05 1.62 7.76 -2.39 -0.02 1.60 16 27 H 0.06 2.71 8.14 -2.39 -0.02 2.69 16 28 H 0.06 2.77 6.49 -2.39 -0.02 2.75 16 29 H 0.27 15.98 8.31 -92.71 -0.77 15.21 16 30 H 0.14 2.72 6.14 -2.38 -0.01 2.71 16 31 H 0.15 2.39 7.75 -2.39 -0.02 2.37 16 32 H 0.07 1.21 6.57 -2.39 -0.02 1.20 16 33 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.11 0.94 8.14 -2.38 -0.02 0.92 16 35 H 0.13 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.03 1.10 5.91 -2.39 -0.01 1.08 16 37 H 0.08 1.38 6.55 -2.39 -0.02 1.37 16 38 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 40 H 0.06 1.61 6.27 -2.39 -0.01 1.59 16 41 H 0.01 0.45 7.24 -2.39 -0.02 0.43 16 Total: -1.00 -78.12 317.40 6.31 -71.82 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: 0.99 Total: 12.99 kcal Atomic # 6 Polarization: -6.48 SS G_CDS: 4.68 Total: -1.80 kcal Atomic # 7 Polarization: -82.88 SS G_CDS: -1.13 Total: -84.00 kcal Atomic # 8 Polarization: -46.70 SS G_CDS: -0.09 Total: -46.79 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 1.85 Total: 47.79 kcal Total: -78.12 6.31 -71.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054178919.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.976 kcal (2) G-P(sol) polarization free energy of solvation -78.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds