Wall clock time and date at job start Mon Mar 30 2020 06:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46954 * 2 1 4 4 H 1.08998 * 109.47628 * 55.00019 * 3 2 1 5 5 C 1.50704 * 109.47141 * 174.99900 * 3 2 1 6 6 H 1.08001 * 120.00255 * 119.99773 * 5 3 2 7 7 C 1.37879 * 119.99921 * 300.00108 * 5 3 2 8 8 N 1.31511 * 119.99857 * 179.97438 * 7 5 3 9 9 Si 1.86800 * 120.00063 * 359.97438 * 7 5 3 10 10 H 1.48500 * 109.46668 * 90.00181 * 9 7 5 11 11 H 1.48497 * 109.47095 * 210.00258 * 9 7 5 12 12 H 1.48497 * 109.46801 * 330.00474 * 9 7 5 13 13 N 1.46500 * 109.47261 * 294.99552 * 3 2 1 14 14 C 1.33878 * 122.76614 * 299.98398 * 13 3 2 15 15 O 1.21230 * 125.39396 * 0.03273 * 14 13 3 16 16 C 1.51308 * 109.20638 * 180.02562 * 14 13 3 17 17 C 1.54226 * 103.55871 * 359.97438 * 16 14 13 18 18 C 1.53004 * 110.60560 * 241.32636 * 17 16 14 19 19 C 1.52997 * 110.60315 * 118.51722 * 17 16 14 20 20 C 1.53000 * 109.46876 * 179.97438 * 19 17 16 21 21 C 1.52998 * 109.47555 * 300.00236 * 19 17 16 22 22 C 1.33881 * 122.75885 * 119.99661 * 13 3 2 23 23 O 1.21219 * 125.39680 * 359.96684 * 22 13 3 24 24 H 1.08998 * 109.46857 * 60.00446 * 1 2 3 25 25 H 1.09000 * 109.46643 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.46921 * 300.00282 * 1 2 3 27 27 H 1.09002 * 109.47499 * 239.99794 * 2 1 3 28 28 H 1.08999 * 109.47129 * 120.00029 * 2 1 3 29 29 H 0.96996 * 120.00355 * 179.97438 * 8 7 5 30 30 H 1.09002 * 110.60370 * 241.47710 * 16 14 13 31 31 H 1.09000 * 110.60578 * 118.52059 * 16 14 13 32 32 H 1.08997 * 109.46608 * 59.30070 * 18 17 16 33 33 H 1.09003 * 109.46870 * 179.29798 * 18 17 16 34 34 H 1.08997 * 109.46837 * 299.29903 * 18 17 16 35 35 H 1.09004 * 109.47217 * 60.00560 * 19 17 16 36 36 H 1.09008 * 109.47113 * 60.00358 * 20 19 17 37 37 H 1.09010 * 109.47384 * 180.02562 * 20 19 17 38 38 H 1.08993 * 109.47625 * 300.00308 * 20 19 17 39 39 H 1.08997 * 109.46904 * 59.99848 * 21 19 17 40 40 H 1.08997 * 109.47341 * 180.02562 * 21 19 17 41 41 H 1.09008 * 109.46883 * 299.99917 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1473 1.8889 -0.6523 7 6 4.1433 0.8784 1.2280 8 7 5.4540 0.8796 1.3359 9 14 3.0963 0.1101 2.5708 10 1 2.8746 -1.3260 2.2646 11 1 3.7941 0.2361 3.8755 12 1 1.7881 0.8094 2.6394 13 7 1.6525 2.0975 -1.2518 14 6 2.0426 1.6532 -2.4530 15 8 2.7429 0.6833 -2.6494 16 6 1.4708 2.5532 -3.5264 17 6 0.6736 3.6055 -2.7291 18 6 -0.8094 3.5538 -3.1020 19 6 1.2394 5.0063 -2.9707 20 6 0.4305 6.0283 -2.1694 21 6 2.7021 5.0497 -2.5242 22 6 0.8793 3.1898 -1.2888 23 8 0.4170 3.7558 -0.3217 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 5.8771 0.4819 2.1128 30 1 0.8101 1.9911 -4.1865 31 1 2.2704 3.0274 -4.0955 32 1 -1.2034 2.5604 -2.8876 33 1 -1.3565 4.2952 -2.5197 34 1 -0.9246 3.7690 -4.1643 35 1 1.1763 5.2455 -4.0323 36 1 0.4931 5.7893 -1.1077 37 1 0.8333 7.0264 -2.3419 38 1 -0.6114 5.9973 -2.4879 39 1 3.2781 4.3217 -3.0955 40 1 3.1051 6.0478 -2.6960 41 1 2.7651 4.8105 -1.4626 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054178920.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:36 Heat of formation + Delta-G solvation = -74.468598 kcal Electronic energy + Delta-G solvation = -22551.490316 eV Core-core repulsion = 19431.557436 eV Total energy + Delta-G solvation = -3119.932880 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.76269 -38.13729 -36.77649 -35.44649 -33.75926 -32.02867 -31.20962 -28.82593 -27.53964 -26.33130 -24.30150 -23.01993 -22.04704 -21.85620 -19.60601 -18.23618 -16.90632 -16.51194 -16.22855 -15.32423 -15.02959 -14.62453 -14.28462 -14.06213 -13.76416 -13.57518 -13.13137 -13.11938 -12.73792 -12.47141 -12.29956 -12.10176 -12.08810 -11.92924 -11.80055 -11.70684 -11.34293 -10.99607 -10.84857 -10.76653 -10.66353 -10.52929 -10.12454 -9.79467 -9.70497 -9.25209 -9.13864 -8.69643 -8.50719 -6.15956 -4.17109 2.13491 3.21576 3.28526 3.33432 3.33683 3.42730 4.28711 4.31080 4.48462 4.64413 4.76176 5.06364 5.12252 5.15493 5.39110 5.48047 5.55061 5.60673 5.70240 5.77137 5.79482 5.80185 5.82974 5.90341 5.91702 6.05365 6.08709 6.20517 6.31355 6.44409 6.45566 6.46074 6.53823 6.59553 6.84165 7.06168 7.42050 7.79723 8.04974 8.31820 8.58623 8.85246 9.41474 10.96790 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.022772 B = 0.007734 C = 0.007408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.297448 B = 3619.568357 C = 3778.570301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.147 4.147 3 C 0.231 3.769 4 H 0.062 0.938 5 C -0.522 4.522 6 H 0.080 0.920 7 C 0.079 3.921 8 N -0.889 5.889 9 Si 0.879 3.121 10 H -0.274 1.274 11 H -0.292 1.292 12 H -0.263 1.263 13 N -0.545 5.545 14 C 0.525 3.475 15 O -0.466 6.466 16 C -0.159 4.159 17 C -0.097 4.097 18 C -0.132 4.132 19 C -0.070 4.070 20 C -0.158 4.158 21 C -0.161 4.161 22 C 0.536 3.464 23 O -0.490 6.490 24 H 0.042 0.958 25 H 0.047 0.953 26 H 0.050 0.950 27 H 0.078 0.922 28 H 0.063 0.937 29 H 0.267 0.733 30 H 0.111 0.889 31 H 0.115 0.885 32 H 0.059 0.941 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.053 0.947 38 H 0.057 0.943 39 H 0.059 0.941 40 H 0.061 0.939 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.788 6.279 -9.904 16.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.185 4.185 3 C 0.131 3.869 4 H 0.080 0.920 5 C -0.560 4.560 6 H 0.098 0.902 7 C -0.125 4.125 8 N -0.526 5.526 9 Si 0.708 3.292 10 H -0.201 1.201 11 H -0.219 1.219 12 H -0.187 1.187 13 N -0.285 5.285 14 C 0.312 3.688 15 O -0.336 6.336 16 C -0.199 4.199 17 C -0.100 4.100 18 C -0.189 4.189 19 C -0.089 4.089 20 C -0.215 4.215 21 C -0.218 4.218 22 C 0.324 3.676 23 O -0.363 6.363 24 H 0.062 0.938 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.097 0.903 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.129 0.871 31 H 0.133 0.867 32 H 0.078 0.922 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.100 0.900 36 H 0.094 0.906 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -11.465 5.967 -9.326 15.938 hybrid contribution -0.270 -0.579 0.810 1.032 sum -11.735 5.387 -8.516 15.468 Atomic orbital electron populations 1.21832 0.97562 1.00501 1.00939 1.22313 0.93708 0.99469 1.03020 1.19602 0.97314 0.89263 0.80769 0.91996 1.20956 0.87937 1.39628 1.07457 0.90203 1.24810 0.94882 0.95226 0.97540 1.69856 1.08566 1.44535 1.29658 0.86983 0.80865 0.80052 0.81287 1.20110 1.21888 1.18743 1.46760 1.44443 1.26869 1.10439 1.20448 0.79355 0.84794 0.84174 1.90740 1.33229 1.25773 1.83901 1.22752 1.01770 0.96946 0.98402 1.21575 0.98186 0.97034 0.93255 1.21774 0.92128 1.02892 1.02154 1.20992 0.95616 0.91586 1.00677 1.22023 0.99366 0.97787 1.02294 1.22019 0.94944 1.02104 1.02719 1.20414 0.76713 0.79390 0.91103 1.90646 1.49169 1.55577 1.40922 0.93843 0.93410 0.93136 0.90341 0.91866 0.92322 0.87079 0.86676 0.92196 0.90840 0.91090 0.90004 0.90597 0.92766 0.92429 0.92220 0.92024 0.91835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 9.80 37.16 0.36 -2.43 16 2 C -0.15 -3.32 4.83 -26.73 -0.13 -3.45 16 3 C 0.23 5.61 1.67 -69.08 -0.12 5.49 16 4 H 0.06 1.59 6.47 -51.93 -0.34 1.25 16 5 C -0.52 -14.85 8.54 -34.44 -0.29 -15.15 16 6 H 0.08 2.50 7.89 -52.49 -0.41 2.09 16 7 C 0.08 2.29 5.45 -17.82 -0.10 2.19 16 8 N -0.89 -27.25 13.96 55.43 0.77 -26.48 16 9 Si 0.88 21.88 24.41 -169.99 -4.15 17.73 16 10 H -0.27 -6.63 6.83 56.52 0.39 -6.24 16 11 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 12 H -0.26 -6.29 6.53 56.52 0.37 -5.92 16 13 N -0.55 -11.29 1.92 -109.49 -0.21 -11.50 16 14 C 0.52 10.17 7.29 -11.09 -0.08 10.09 16 15 O -0.47 -10.74 15.68 5.60 0.09 -10.65 16 16 C -0.16 -2.10 5.78 -26.94 -0.16 -2.25 16 17 C -0.10 -1.28 0.60 -154.72 -0.09 -1.38 16 18 C -0.13 -1.37 8.08 37.16 0.30 -1.07 16 19 C -0.07 -0.82 2.26 -90.62 -0.21 -1.03 16 20 C -0.16 -1.85 8.55 37.16 0.32 -1.53 16 21 C -0.16 -2.22 8.63 37.16 0.32 -1.90 16 22 C 0.54 9.81 5.16 -11.08 -0.06 9.76 16 23 O -0.49 -10.08 15.19 5.61 0.09 -10.00 16 24 H 0.04 0.75 7.75 -51.93 -0.40 0.35 16 25 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.08 1.83 6.50 -51.93 -0.34 1.50 16 28 H 0.06 1.49 3.22 -51.93 -0.17 1.33 16 29 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 30 H 0.11 1.16 7.74 -51.93 -0.40 0.76 16 31 H 0.12 1.34 6.45 -51.93 -0.33 1.00 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.77 6.37 -51.93 -0.33 0.44 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.08 1.12 6.09 -51.92 -0.32 0.80 16 37 H 0.05 0.56 8.14 -51.92 -0.42 0.13 16 38 H 0.06 0.58 6.42 -51.93 -0.33 0.25 16 39 H 0.06 0.83 6.53 -51.93 -0.34 0.49 16 40 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.06 1.10 7.12 -51.92 -0.37 0.73 16 LS Contribution 312.09 15.07 4.70 4.70 Total: -1.00 -32.74 312.09 -4.86 -37.60 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -6.22 Total: 1.25 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: 0.07 Total: -2.66 kcal Atomic # 7 Polarization: -38.54 SS G_CDS: 0.56 Total: -37.98 kcal Atomic # 8 Polarization: -20.82 SS G_CDS: 0.17 Total: -20.64 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.15 Total: 17.73 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.74 -4.86 -37.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054178920.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.869 kcal (2) G-P(sol) polarization free energy of solvation -32.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds