Wall clock time and date at job start Mon Mar 30 2020 06:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46954 * 2 1 4 4 H 1.08998 * 109.47628 * 55.00019 * 3 2 1 5 5 C 1.50704 * 109.47141 * 174.99900 * 3 2 1 6 6 H 1.08001 * 120.00255 * 119.99773 * 5 3 2 7 7 C 1.37879 * 119.99921 * 300.00108 * 5 3 2 8 8 N 1.31511 * 119.99857 * 179.97438 * 7 5 3 9 9 Si 1.86800 * 120.00063 * 359.97438 * 7 5 3 10 10 H 1.48500 * 109.46668 * 90.00181 * 9 7 5 11 11 H 1.48497 * 109.47095 * 210.00258 * 9 7 5 12 12 H 1.48497 * 109.46801 * 330.00474 * 9 7 5 13 13 N 1.46500 * 109.47261 * 294.99552 * 3 2 1 14 14 C 1.33878 * 122.76614 * 299.98398 * 13 3 2 15 15 O 1.21230 * 125.39396 * 0.03273 * 14 13 3 16 16 C 1.51308 * 109.20638 * 180.02562 * 14 13 3 17 17 C 1.54226 * 103.55871 * 359.97438 * 16 14 13 18 18 C 1.53004 * 110.60560 * 241.32636 * 17 16 14 19 19 C 1.52997 * 110.60315 * 118.51722 * 17 16 14 20 20 C 1.53000 * 109.46876 * 179.97438 * 19 17 16 21 21 C 1.52998 * 109.47555 * 300.00236 * 19 17 16 22 22 C 1.33881 * 122.75885 * 119.99661 * 13 3 2 23 23 O 1.21219 * 125.39680 * 359.96684 * 22 13 3 24 24 H 1.08998 * 109.46857 * 60.00446 * 1 2 3 25 25 H 1.09000 * 109.46643 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.46921 * 300.00282 * 1 2 3 27 27 H 1.09002 * 109.47499 * 239.99794 * 2 1 3 28 28 H 1.08999 * 109.47129 * 120.00029 * 2 1 3 29 29 H 0.96996 * 120.00355 * 179.97438 * 8 7 5 30 30 H 1.09002 * 110.60370 * 241.47710 * 16 14 13 31 31 H 1.09000 * 110.60578 * 118.52059 * 16 14 13 32 32 H 1.08997 * 109.46608 * 59.30070 * 18 17 16 33 33 H 1.09003 * 109.46870 * 179.29798 * 18 17 16 34 34 H 1.08997 * 109.46837 * 299.29903 * 18 17 16 35 35 H 1.09004 * 109.47217 * 60.00560 * 19 17 16 36 36 H 1.09008 * 109.47113 * 60.00358 * 20 19 17 37 37 H 1.09010 * 109.47384 * 180.02562 * 20 19 17 38 38 H 1.08993 * 109.47625 * 300.00308 * 20 19 17 39 39 H 1.08997 * 109.46904 * 59.99848 * 21 19 17 40 40 H 1.08997 * 109.47341 * 180.02562 * 21 19 17 41 41 H 1.09008 * 109.46883 * 299.99917 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1473 1.8889 -0.6523 7 6 4.1433 0.8784 1.2280 8 7 5.4540 0.8796 1.3359 9 14 3.0963 0.1101 2.5708 10 1 2.8746 -1.3260 2.2646 11 1 3.7941 0.2361 3.8755 12 1 1.7881 0.8094 2.6394 13 7 1.6525 2.0975 -1.2518 14 6 2.0426 1.6532 -2.4530 15 8 2.7429 0.6833 -2.6494 16 6 1.4708 2.5532 -3.5264 17 6 0.6736 3.6055 -2.7291 18 6 -0.8094 3.5538 -3.1020 19 6 1.2394 5.0063 -2.9707 20 6 0.4305 6.0283 -2.1694 21 6 2.7021 5.0497 -2.5242 22 6 0.8793 3.1898 -1.2888 23 8 0.4170 3.7558 -0.3217 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 5.8771 0.4819 2.1128 30 1 0.8101 1.9911 -4.1865 31 1 2.2704 3.0274 -4.0955 32 1 -1.2034 2.5604 -2.8876 33 1 -1.3565 4.2952 -2.5197 34 1 -0.9246 3.7690 -4.1643 35 1 1.1763 5.2455 -4.0323 36 1 0.4931 5.7893 -1.1077 37 1 0.8333 7.0264 -2.3419 38 1 -0.6114 5.9973 -2.4879 39 1 3.2781 4.3217 -3.0955 40 1 3.1051 6.0478 -2.6960 41 1 2.7651 4.8105 -1.4626 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054178920.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:36 Heat of formation + Delta-G solvation = -97.038506 kcal Electronic energy + Delta-G solvation = -22552.469021 eV Core-core repulsion = 19431.557436 eV Total energy + Delta-G solvation = -3120.911585 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.17674 -39.65631 -38.12823 -37.12012 -35.38749 -34.06645 -32.37771 -30.10325 -29.19350 -27.41907 -25.64661 -24.83048 -23.49645 -23.20851 -21.09547 -19.65981 -18.94514 -18.18012 -17.67436 -16.95207 -16.50990 -15.95629 -15.55562 -15.50565 -15.35867 -14.97118 -14.71890 -14.51524 -14.28961 -14.11471 -13.88173 -13.32920 -13.22699 -13.12558 -13.08472 -12.83028 -12.70468 -12.61832 -12.52331 -12.10209 -11.98407 -11.82824 -11.61540 -11.52297 -11.47880 -10.90980 -10.84514 -10.60244 -10.34648 -8.42992 -6.48847 0.67752 1.19696 1.25902 1.35457 1.80060 2.00073 2.18672 2.88994 3.14947 3.29514 3.52015 3.74263 3.97613 4.02912 4.12647 4.16410 4.23672 4.39931 4.56718 4.60205 4.65870 4.69083 4.70031 4.79294 4.89026 4.91459 4.92425 4.96323 5.03746 5.05189 5.08102 5.18545 5.27479 5.31005 5.34974 5.43526 5.57757 6.02081 6.25063 6.50383 6.61146 6.98237 7.16581 8.73916 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.022772 B = 0.007734 C = 0.007408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.297448 B = 3619.568357 C = 3778.570301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.144 4.144 3 C 0.233 3.767 4 H 0.045 0.955 5 C -0.524 4.524 6 H 0.032 0.968 7 C 0.020 3.980 8 N -0.937 5.937 9 Si 0.942 3.058 10 H -0.258 1.258 11 H -0.287 1.287 12 H -0.249 1.249 13 N -0.560 5.560 14 C 0.513 3.487 15 O -0.516 6.516 16 C -0.141 4.141 17 C -0.084 4.084 18 C -0.130 4.130 19 C -0.065 4.065 20 C -0.156 4.156 21 C -0.161 4.161 22 C 0.526 3.474 23 O -0.520 6.520 24 H 0.054 0.946 25 H 0.076 0.924 26 H 0.051 0.949 27 H 0.064 0.936 28 H 0.052 0.948 29 H 0.270 0.730 30 H 0.154 0.846 31 H 0.137 0.863 32 H 0.059 0.941 33 H 0.072 0.928 34 H 0.114 0.886 35 H 0.131 0.869 36 H 0.036 0.964 37 H 0.069 0.931 38 H 0.080 0.920 39 H 0.055 0.945 40 H 0.080 0.920 41 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.995 6.859 -12.046 20.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.182 4.182 3 C 0.131 3.869 4 H 0.063 0.937 5 C -0.563 4.563 6 H 0.050 0.950 7 C -0.179 4.179 8 N -0.576 5.576 9 Si 0.767 3.233 10 H -0.184 1.184 11 H -0.214 1.214 12 H -0.173 1.173 13 N -0.299 5.299 14 C 0.303 3.697 15 O -0.390 6.390 16 C -0.180 4.180 17 C -0.087 4.087 18 C -0.187 4.187 19 C -0.084 4.084 20 C -0.213 4.213 21 C -0.219 4.219 22 C 0.317 3.683 23 O -0.395 6.395 24 H 0.073 0.927 25 H 0.095 0.905 26 H 0.070 0.930 27 H 0.083 0.917 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.171 0.829 31 H 0.155 0.845 32 H 0.078 0.922 33 H 0.091 0.909 34 H 0.132 0.868 35 H 0.149 0.851 36 H 0.055 0.945 37 H 0.088 0.912 38 H 0.099 0.901 39 H 0.074 0.926 40 H 0.099 0.901 41 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges -14.705 6.576 -11.497 19.791 hybrid contribution 0.824 -0.659 1.449 1.793 sum -13.880 5.917 -10.048 18.128 Atomic orbital electron populations 1.21754 0.94008 1.02610 1.01548 1.22169 0.96830 0.97391 1.01773 1.19225 0.94205 0.90841 0.82652 0.93694 1.21131 0.90306 1.38715 1.06110 0.94994 1.25718 0.96105 0.95863 1.00193 1.70004 1.10567 1.46210 1.30862 0.85954 0.79539 0.79902 0.77884 1.18394 1.21405 1.17272 1.46939 1.45319 1.27853 1.09834 1.21587 0.78298 0.84706 0.85075 1.90705 1.35460 1.28226 1.84592 1.22887 1.02755 0.95733 0.96647 1.21722 1.00766 0.97624 0.88625 1.21870 0.88949 1.03074 1.04806 1.21117 0.93370 0.90568 1.03296 1.22003 1.00951 0.98500 0.99838 1.22038 0.97336 1.03063 0.99423 1.21482 0.75333 0.78047 0.93484 1.90622 1.50152 1.55932 1.42747 0.92740 0.90522 0.93029 0.91712 0.92983 0.92069 0.82851 0.84487 0.92239 0.90918 0.86786 0.85139 0.94499 0.91239 0.90139 0.92610 0.90075 0.96782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.99 9.80 71.98 0.71 -4.29 16 2 C -0.14 -6.49 4.83 30.60 0.15 -6.35 16 3 C 0.23 11.70 1.67 44.25 0.07 11.77 16 4 H 0.05 2.39 6.47 -2.39 -0.02 2.37 16 5 C -0.52 -31.69 8.54 25.60 0.22 -31.47 16 6 H 0.03 2.17 7.89 -2.91 -0.02 2.14 16 7 C 0.02 1.22 5.45 84.66 0.46 1.68 16 8 N -0.94 -60.41 13.96 21.45 0.30 -60.11 16 9 Si 0.94 46.32 24.41 68.60 1.67 48.00 16 10 H -0.26 -11.97 6.83 99.48 0.68 -11.29 16 11 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 12 H -0.25 -11.56 6.53 99.48 0.65 -10.91 16 13 N -0.56 -23.61 1.92 -738.14 -1.42 -25.02 16 14 C 0.51 19.88 7.29 87.99 0.64 20.52 16 15 O -0.52 -24.52 15.68 -2.88 -0.05 -24.56 16 16 C -0.14 -3.26 5.78 30.46 0.18 -3.09 16 17 C -0.08 -1.96 0.60 -52.32 -0.03 -1.99 16 18 C -0.13 -2.03 8.08 71.98 0.58 -1.45 16 19 C -0.07 -1.31 2.26 -10.80 -0.02 -1.33 16 20 C -0.16 -3.22 8.55 71.98 0.62 -2.61 16 21 C -0.16 -4.34 8.63 71.98 0.62 -3.72 16 22 C 0.53 19.12 5.16 87.99 0.45 19.57 16 23 O -0.52 -21.75 15.19 -2.84 -0.04 -21.79 16 24 H 0.05 1.77 7.75 -2.39 -0.02 1.75 16 25 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 26 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.06 3.08 6.50 -2.39 -0.02 3.07 16 28 H 0.05 2.44 3.22 -2.39 -0.01 2.43 16 29 H 0.27 16.17 8.31 -92.71 -0.77 15.40 16 30 H 0.15 2.34 7.74 -2.39 -0.02 2.33 16 31 H 0.14 2.66 6.45 -2.39 -0.02 2.64 16 32 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.07 1.19 6.37 -2.39 -0.02 1.18 16 34 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.13 1.53 8.14 -2.38 -0.02 1.51 16 36 H 0.04 1.06 6.09 -2.38 -0.01 1.05 16 37 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 38 H 0.08 1.30 6.42 -2.39 -0.02 1.28 16 39 H 0.05 1.51 6.53 -2.39 -0.02 1.49 16 40 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.01 0.48 7.12 -2.38 -0.02 0.47 16 Total: -1.00 -79.64 312.09 6.05 -73.59 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: 0.94 Total: 12.65 kcal Atomic # 6 Polarization: -7.38 SS G_CDS: 4.64 Total: -2.74 kcal Atomic # 7 Polarization: -84.01 SS G_CDS: -1.12 Total: -85.13 kcal Atomic # 8 Polarization: -46.27 SS G_CDS: -0.09 Total: -46.36 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 1.67 Total: 48.00 kcal Total: -79.64 6.05 -73.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054178920.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.447 kcal (2) G-P(sol) polarization free energy of solvation -79.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds