Wall clock time and date at job start Mon Mar 30 2020 06:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47188 * 2 1 4 4 H 1.09004 * 109.47131 * 305.00119 * 3 2 1 5 5 C 1.50702 * 109.47245 * 185.00230 * 3 2 1 6 6 H 1.08002 * 120.00299 * 240.00501 * 5 3 2 7 7 C 1.37884 * 119.99942 * 59.72060 * 5 3 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 3 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 3 10 10 H 1.48496 * 109.47341 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.46983 * 120.00379 * 9 7 5 12 12 H 1.48503 * 109.47491 * 240.00192 * 9 7 5 13 13 N 1.46491 * 109.47268 * 65.00268 * 3 2 1 14 14 C 1.33881 * 122.76493 * 60.02082 * 13 3 2 15 15 O 1.21231 * 125.39217 * 0.02879 * 14 13 3 16 16 C 1.51311 * 109.21148 * 179.97438 * 14 13 3 17 17 C 1.54227 * 103.55354 * 0.02562 * 16 14 13 18 18 C 1.53000 * 110.60311 * 241.32584 * 17 16 14 19 19 C 1.52999 * 110.61023 * 118.51727 * 17 16 14 20 20 C 1.52996 * 109.47418 * 180.02562 * 19 17 16 21 21 C 1.53005 * 109.46455 * 299.99767 * 19 17 16 22 22 C 1.33876 * 122.76483 * 239.73789 * 13 3 2 23 23 O 1.21229 * 125.39236 * 359.97172 * 22 13 3 24 24 H 1.08996 * 109.47100 * 59.99805 * 1 2 3 25 25 H 1.08994 * 109.47398 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46737 * 299.99648 * 1 2 3 27 27 H 1.09005 * 109.46737 * 240.00352 * 2 1 3 28 28 H 1.08996 * 109.47570 * 120.00444 * 2 1 3 29 29 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 30 30 H 1.09005 * 110.60502 * 118.51665 * 16 14 13 31 31 H 1.08991 * 110.60702 * 241.48424 * 16 14 13 32 32 H 1.08999 * 109.47545 * 59.29394 * 18 17 16 33 33 H 1.08995 * 109.47463 * 179.30035 * 18 17 16 34 34 H 1.08998 * 109.46987 * 299.29690 * 18 17 16 35 35 H 1.08996 * 109.47446 * 59.99032 * 19 17 16 36 36 H 1.08996 * 109.47699 * 59.99068 * 20 19 17 37 37 H 1.08999 * 109.47568 * 179.97438 * 20 19 17 38 38 H 1.09001 * 109.46741 * 299.99982 * 20 19 17 39 39 H 1.09000 * 109.47402 * 299.99740 * 21 19 17 40 40 H 1.08996 * 109.47343 * 60.00238 * 21 19 17 41 41 H 1.09003 * 109.46734 * 180.02562 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1473 1.8888 0.6522 7 6 4.1435 0.8733 -1.2254 8 7 3.4063 0.3320 -2.1705 9 14 6.0054 0.8687 -1.3752 10 1 6.5992 1.5345 -0.1881 11 1 6.4924 -0.5321 -1.4518 12 1 6.4050 1.5996 -2.6046 13 7 1.6525 2.0974 1.2517 14 6 2.0427 1.6532 2.4529 15 8 2.7439 0.6839 2.6493 16 6 1.4709 2.5532 3.5265 17 6 0.6736 3.6054 2.7291 18 6 1.2370 5.0067 2.9738 19 6 -0.8099 3.5512 3.0991 20 6 -1.5752 4.6033 2.2941 21 6 -1.3648 2.1617 2.7789 22 6 0.8837 3.1928 1.2885 23 8 0.4264 3.7625 0.3211 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 3.8295 -0.0694 -2.9455 30 1 0.8102 1.9910 4.1865 31 1 2.2704 3.0273 4.0955 32 1 2.2832 5.0361 2.6693 33 1 0.6689 5.7333 2.3929 34 1 1.1602 5.2492 4.0337 35 1 -0.9265 3.7522 4.1640 36 1 -1.4587 4.4018 1.2293 37 1 -2.6322 4.5644 2.5574 38 1 -1.1799 5.5933 2.5218 39 1 -1.2483 1.9605 1.7139 40 1 -0.8197 1.4118 3.3521 41 1 -2.4219 2.1231 3.0420 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054178922.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:39 Heat of formation + Delta-G solvation = -83.822899 kcal Electronic energy + Delta-G solvation = -22519.785241 eV Core-core repulsion = 19399.446727 eV Total energy + Delta-G solvation = -3120.338513 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.64582 -38.01850 -36.62704 -35.25701 -33.71452 -31.86746 -30.78887 -28.85360 -27.01495 -26.33200 -24.20094 -23.36955 -21.97553 -21.35056 -19.43846 -18.15755 -16.90953 -16.22107 -15.88963 -15.20198 -14.86239 -14.47001 -14.37092 -13.93453 -13.76173 -13.21966 -13.12154 -12.95865 -12.82379 -12.28775 -12.13756 -11.96223 -11.91256 -11.73726 -11.65801 -11.33653 -11.13003 -10.99266 -10.82164 -10.65300 -10.52627 -10.32323 -10.16759 -9.83886 -9.64262 -9.23803 -9.02880 -8.45197 -8.33160 -6.11042 -4.17510 2.23092 3.27620 3.34481 3.37760 3.49379 3.54724 4.35518 4.38351 4.55091 4.70623 4.83429 5.09932 5.12708 5.20903 5.38114 5.51460 5.62795 5.67574 5.71301 5.79271 5.87618 5.91636 6.01441 6.04804 6.11853 6.15736 6.24132 6.34464 6.40163 6.50209 6.64271 6.87787 6.91050 7.09243 7.42518 7.65115 7.86916 7.98075 8.15189 8.27212 8.63770 8.85524 9.47400 10.94657 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.024550 B = 0.007131 C = 0.006761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.254270 B = 3925.787943 C = 4140.585235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.135 4.135 3 C 0.259 3.741 4 H 0.063 0.937 5 C -0.518 4.518 6 H 0.060 0.940 7 C 0.066 3.934 8 N -0.888 5.888 9 Si 0.902 3.098 10 H -0.273 1.273 11 H -0.282 1.282 12 H -0.283 1.283 13 N -0.549 5.549 14 C 0.524 3.476 15 O -0.473 6.473 16 C -0.160 4.160 17 C -0.099 4.099 18 C -0.133 4.133 19 C -0.069 4.069 20 C -0.158 4.158 21 C -0.162 4.162 22 C 0.534 3.466 23 O -0.490 6.490 24 H 0.046 0.954 25 H 0.038 0.962 26 H 0.034 0.966 27 H 0.108 0.892 28 H 0.052 0.948 29 H 0.264 0.736 30 H 0.111 0.889 31 H 0.110 0.890 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.052 0.948 38 H 0.058 0.942 39 H 0.062 0.938 40 H 0.058 0.942 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.254 6.157 11.246 15.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.173 4.173 3 C 0.160 3.840 4 H 0.081 0.919 5 C -0.557 4.557 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.526 5.526 9 Si 0.730 3.270 10 H -0.198 1.198 11 H -0.208 1.208 12 H -0.209 1.209 13 N -0.289 5.289 14 C 0.312 3.688 15 O -0.344 6.344 16 C -0.200 4.200 17 C -0.102 4.102 18 C -0.190 4.190 19 C -0.088 4.088 20 C -0.215 4.215 21 C -0.219 4.219 22 C 0.322 3.678 23 O -0.363 6.363 24 H 0.065 0.935 25 H 0.057 0.943 26 H 0.053 0.947 27 H 0.126 0.874 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.129 0.871 31 H 0.129 0.871 32 H 0.081 0.919 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.100 0.900 36 H 0.094 0.906 37 H 0.071 0.929 38 H 0.077 0.923 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.078 5.802 10.594 14.531 hybrid contribution 1.041 -0.125 -0.157 1.060 sum -7.037 5.677 10.437 13.809 Atomic orbital electron populations 1.21901 0.99075 0.99599 1.00108 1.21948 0.91904 0.99159 1.04310 1.19273 0.95824 0.90018 0.78841 0.91922 1.21201 0.90128 1.38421 1.05919 0.92197 1.24840 0.98771 0.94731 0.95282 1.69866 1.35059 1.38131 1.09578 0.86361 0.84816 0.77873 0.77942 1.19759 1.20754 1.20892 1.47098 1.44207 1.26467 1.11136 1.20421 0.79373 0.84682 0.84348 1.90709 1.33791 1.25875 1.84055 1.22756 1.01482 0.97234 0.98555 1.21583 0.97514 0.97438 0.93675 1.21772 1.01388 0.93552 1.02312 1.20969 0.90981 0.96405 1.00448 1.22016 0.99012 0.98206 1.02233 1.22103 1.01048 0.96091 1.02701 1.20381 0.76882 0.79699 0.90854 1.90648 1.48886 1.55925 1.40859 0.93496 0.94299 0.94726 0.87384 0.92880 0.92618 0.87054 0.87130 0.91942 0.90900 0.91286 0.90048 0.90607 0.92876 0.92301 0.91909 0.92340 0.92034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.07 9.80 37.16 0.36 -2.71 16 2 C -0.13 -3.29 5.17 -26.73 -0.14 -3.43 16 3 C 0.26 6.62 2.08 -69.09 -0.14 6.47 16 4 H 0.06 1.78 7.41 -51.93 -0.38 1.39 16 5 C -0.52 -14.52 7.96 -34.44 -0.27 -14.79 16 6 H 0.06 1.72 7.65 -52.49 -0.40 1.31 16 7 C 0.07 1.84 5.29 -17.82 -0.09 1.75 16 8 N -0.89 -25.17 11.28 55.43 0.63 -24.54 16 9 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 10 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 N -0.55 -11.80 1.92 -109.49 -0.21 -12.02 16 14 C 0.52 10.44 7.29 -11.09 -0.08 10.36 16 15 O -0.47 -11.03 15.68 5.60 0.09 -10.94 16 16 C -0.16 -2.20 5.78 -26.94 -0.16 -2.36 16 17 C -0.10 -1.36 0.60 -154.72 -0.09 -1.45 16 18 C -0.13 -1.55 8.07 37.16 0.30 -1.25 16 19 C -0.07 -0.80 2.27 -90.62 -0.21 -1.00 16 20 C -0.16 -1.84 8.55 37.16 0.32 -1.52 16 21 C -0.16 -2.01 8.50 37.16 0.32 -1.69 16 22 C 0.53 10.23 5.17 -11.08 -0.06 10.17 16 23 O -0.49 -10.60 15.21 5.60 0.09 -10.52 16 24 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 25 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.03 0.66 5.73 -51.93 -0.30 0.36 16 27 H 0.11 2.91 5.94 -51.93 -0.31 2.60 16 28 H 0.05 1.34 6.50 -51.93 -0.34 1.00 16 29 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 30 H 0.11 1.26 6.45 -51.93 -0.33 0.93 16 31 H 0.11 1.29 7.74 -51.93 -0.40 0.89 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.07 0.85 6.37 -51.93 -0.33 0.52 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.08 1.11 6.11 -51.93 -0.32 0.79 16 37 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.62 6.42 -51.93 -0.33 0.28 16 39 H 0.06 0.95 5.27 -51.93 -0.27 0.68 16 40 H 0.06 0.70 6.53 -51.93 -0.34 0.37 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 314.88 15.07 4.75 4.75 Total: -1.00 -31.11 314.88 -5.79 -36.89 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -6.15 Total: 1.05 kcal Atomic # 6 Polarization: -1.51 SS G_CDS: 0.05 Total: -1.46 kcal Atomic # 7 Polarization: -36.97 SS G_CDS: 0.42 Total: -36.56 kcal Atomic # 8 Polarization: -21.63 SS G_CDS: 0.17 Total: -21.46 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.11 -5.79 -36.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054178922.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.932 kcal (2) G-P(sol) polarization free energy of solvation -31.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds