Wall clock time and date at job start Mon Mar 30 2020 06:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47188 * 2 1 4 4 H 1.09004 * 109.47131 * 305.00119 * 3 2 1 5 5 C 1.50702 * 109.47245 * 185.00230 * 3 2 1 6 6 H 1.08002 * 120.00299 * 240.00501 * 5 3 2 7 7 C 1.37884 * 119.99942 * 59.72060 * 5 3 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 3 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 3 10 10 H 1.48496 * 109.47341 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.46983 * 120.00379 * 9 7 5 12 12 H 1.48503 * 109.47491 * 240.00192 * 9 7 5 13 13 N 1.46491 * 109.47268 * 65.00268 * 3 2 1 14 14 C 1.33881 * 122.76493 * 60.02082 * 13 3 2 15 15 O 1.21231 * 125.39217 * 0.02879 * 14 13 3 16 16 C 1.51311 * 109.21148 * 179.97438 * 14 13 3 17 17 C 1.54227 * 103.55354 * 0.02562 * 16 14 13 18 18 C 1.53000 * 110.60311 * 241.32584 * 17 16 14 19 19 C 1.52999 * 110.61023 * 118.51727 * 17 16 14 20 20 C 1.52996 * 109.47418 * 180.02562 * 19 17 16 21 21 C 1.53005 * 109.46455 * 299.99767 * 19 17 16 22 22 C 1.33876 * 122.76483 * 239.73789 * 13 3 2 23 23 O 1.21229 * 125.39236 * 359.97172 * 22 13 3 24 24 H 1.08996 * 109.47100 * 59.99805 * 1 2 3 25 25 H 1.08994 * 109.47398 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46737 * 299.99648 * 1 2 3 27 27 H 1.09005 * 109.46737 * 240.00352 * 2 1 3 28 28 H 1.08996 * 109.47570 * 120.00444 * 2 1 3 29 29 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 30 30 H 1.09005 * 110.60502 * 118.51665 * 16 14 13 31 31 H 1.08991 * 110.60702 * 241.48424 * 16 14 13 32 32 H 1.08999 * 109.47545 * 59.29394 * 18 17 16 33 33 H 1.08995 * 109.47463 * 179.30035 * 18 17 16 34 34 H 1.08998 * 109.46987 * 299.29690 * 18 17 16 35 35 H 1.08996 * 109.47446 * 59.99032 * 19 17 16 36 36 H 1.08996 * 109.47699 * 59.99068 * 20 19 17 37 37 H 1.08999 * 109.47568 * 179.97438 * 20 19 17 38 38 H 1.09001 * 109.46741 * 299.99982 * 20 19 17 39 39 H 1.09000 * 109.47402 * 299.99740 * 21 19 17 40 40 H 1.08996 * 109.47343 * 60.00238 * 21 19 17 41 41 H 1.09003 * 109.46734 * 180.02562 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1473 1.8888 0.6522 7 6 4.1435 0.8733 -1.2254 8 7 3.4063 0.3320 -2.1705 9 14 6.0054 0.8687 -1.3752 10 1 6.5992 1.5345 -0.1881 11 1 6.4924 -0.5321 -1.4518 12 1 6.4050 1.5996 -2.6046 13 7 1.6525 2.0974 1.2517 14 6 2.0427 1.6532 2.4529 15 8 2.7439 0.6839 2.6493 16 6 1.4709 2.5532 3.5265 17 6 0.6736 3.6054 2.7291 18 6 1.2370 5.0067 2.9738 19 6 -0.8099 3.5512 3.0991 20 6 -1.5752 4.6033 2.2941 21 6 -1.3648 2.1617 2.7789 22 6 0.8837 3.1928 1.2885 23 8 0.4264 3.7625 0.3211 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 3.8295 -0.0694 -2.9455 30 1 0.8102 1.9910 4.1865 31 1 2.2704 3.0273 4.0955 32 1 2.2832 5.0361 2.6693 33 1 0.6689 5.7333 2.3929 34 1 1.1602 5.2492 4.0337 35 1 -0.9265 3.7522 4.1640 36 1 -1.4587 4.4018 1.2293 37 1 -2.6322 4.5644 2.5574 38 1 -1.1799 5.5933 2.5218 39 1 -1.2483 1.9605 1.7139 40 1 -0.8197 1.4118 3.3521 41 1 -2.4219 2.1231 3.0420 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054178922.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:39 Heat of formation + Delta-G solvation = -103.167805 kcal Electronic energy + Delta-G solvation = -22520.624099 eV Core-core repulsion = 19399.446727 eV Total energy + Delta-G solvation = -3121.177371 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.10130 -39.57893 -37.98187 -37.01778 -35.39373 -33.70886 -32.12150 -30.12432 -28.77107 -27.39244 -25.68457 -25.11150 -23.32243 -22.89449 -21.00207 -19.60010 -18.78844 -17.95388 -17.42468 -16.81538 -16.44916 -15.87115 -15.57498 -15.48988 -15.08405 -14.86012 -14.55326 -14.49384 -14.37157 -13.78376 -13.35714 -13.27213 -13.22942 -13.04715 -12.96228 -12.79598 -12.75834 -12.61791 -12.32077 -12.22183 -11.96239 -11.69621 -11.64073 -11.51710 -11.44369 -10.92149 -10.59894 -10.48858 -10.21642 -8.25273 -6.39975 0.72135 1.33132 1.34543 1.46280 1.93811 2.05365 2.35944 3.02033 3.18560 3.34742 3.55758 3.76298 4.00730 4.18315 4.32680 4.36405 4.43914 4.51833 4.63451 4.67685 4.68527 4.80009 4.84960 4.86321 4.92273 4.96398 5.03315 5.09001 5.09367 5.17758 5.18719 5.31392 5.42911 5.46042 5.57586 5.60537 5.79042 5.99207 6.38486 6.60209 6.69423 7.06148 7.30794 8.79669 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.024550 B = 0.007131 C = 0.006761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.254270 B = 3925.787943 C = 4140.585235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.124 4.124 3 C 0.264 3.736 4 H 0.021 0.979 5 C -0.538 4.538 6 H 0.046 0.954 7 C 0.019 3.981 8 N -0.911 5.911 9 Si 0.964 3.036 10 H -0.273 1.273 11 H -0.274 1.274 12 H -0.273 1.273 13 N -0.564 5.564 14 C 0.512 3.488 15 O -0.517 6.517 16 C -0.141 4.141 17 C -0.085 4.085 18 C -0.133 4.133 19 C -0.064 4.064 20 C -0.157 4.157 21 C -0.165 4.165 22 C 0.523 3.477 23 O -0.526 6.526 24 H 0.036 0.964 25 H 0.061 0.939 26 H 0.049 0.951 27 H 0.079 0.921 28 H 0.041 0.959 29 H 0.267 0.733 30 H 0.148 0.852 31 H 0.142 0.858 32 H 0.047 0.953 33 H 0.070 0.930 34 H 0.115 0.885 35 H 0.130 0.870 36 H 0.035 0.965 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.023 0.977 40 H 0.063 0.937 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.951 7.273 14.379 18.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.163 4.163 3 C 0.164 3.836 4 H 0.039 0.961 5 C -0.576 4.576 6 H 0.064 0.936 7 C -0.181 4.181 8 N -0.549 5.549 9 Si 0.788 3.212 10 H -0.198 1.198 11 H -0.199 1.199 12 H -0.198 1.198 13 N -0.303 5.303 14 C 0.303 3.697 15 O -0.392 6.392 16 C -0.180 4.180 17 C -0.088 4.088 18 C -0.190 4.190 19 C -0.083 4.083 20 C -0.214 4.214 21 C -0.222 4.222 22 C 0.314 3.686 23 O -0.401 6.401 24 H 0.055 0.945 25 H 0.080 0.920 26 H 0.068 0.932 27 H 0.097 0.903 28 H 0.059 0.941 29 H 0.077 0.923 30 H 0.165 0.835 31 H 0.160 0.840 32 H 0.066 0.934 33 H 0.089 0.911 34 H 0.133 0.867 35 H 0.148 0.852 36 H 0.054 0.946 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.042 0.958 40 H 0.082 0.918 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -8.797 6.942 13.747 17.735 hybrid contribution 1.216 -0.456 -1.191 1.762 sum -7.580 6.486 12.556 16.037 Atomic orbital electron populations 1.21770 0.96185 1.01170 1.00377 1.21719 0.94428 0.98050 1.02130 1.18781 0.94406 0.90341 0.80084 0.96088 1.21401 0.91524 1.38826 1.05883 0.93610 1.25653 1.03217 0.94317 0.94941 1.69980 1.36719 1.38317 1.09894 0.85423 0.79512 0.78185 0.78049 1.19751 1.19948 1.19815 1.47200 1.45123 1.27433 1.10558 1.21533 0.78421 0.84677 0.85068 1.90676 1.35820 1.28043 1.84653 1.22877 1.02586 0.95876 0.96697 1.21719 0.99715 0.98645 0.88765 1.21861 1.00183 0.91706 1.05219 1.21103 0.88554 0.95638 1.02957 1.21999 1.00566 0.99023 0.99794 1.22136 1.02866 0.96944 1.00228 1.21497 0.75387 0.78428 0.93315 1.90622 1.49879 1.56656 1.42950 0.94512 0.91964 0.93196 0.90310 0.94051 0.92318 0.83450 0.83979 0.93422 0.91136 0.86671 0.85249 0.94566 0.90859 0.90913 0.95752 0.91826 0.89735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.83 9.80 71.98 0.71 -5.13 16 2 C -0.12 -6.39 5.17 30.59 0.16 -6.23 16 3 C 0.26 14.29 2.08 44.25 0.09 14.38 16 4 H 0.02 1.30 7.41 -2.38 -0.02 1.28 16 5 C -0.54 -31.55 7.96 25.60 0.20 -31.35 16 6 H 0.05 2.73 7.65 -2.91 -0.02 2.71 16 7 C 0.02 1.08 5.29 84.66 0.45 1.53 16 8 N -0.91 -53.70 11.28 21.45 0.24 -53.46 16 9 Si 0.96 45.73 29.54 68.60 2.03 47.76 16 10 H -0.27 -12.83 7.11 99.48 0.71 -12.13 16 11 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 12 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 13 N -0.56 -24.87 1.92 -738.14 -1.42 -26.29 16 14 C 0.51 20.21 7.29 87.99 0.64 20.86 16 15 O -0.52 -24.45 15.68 -2.88 -0.05 -24.49 16 16 C -0.14 -3.36 5.78 30.46 0.18 -3.18 16 17 C -0.09 -2.10 0.60 -52.32 -0.03 -2.13 16 18 C -0.13 -2.60 8.07 71.98 0.58 -2.02 16 19 C -0.06 -1.21 2.27 -10.79 -0.02 -1.23 16 20 C -0.16 -3.21 8.55 71.98 0.62 -2.59 16 21 C -0.16 -3.60 8.50 71.98 0.61 -2.98 16 22 C 0.52 20.24 5.17 87.99 0.46 20.70 16 23 O -0.53 -23.81 15.21 -2.87 -0.04 -23.85 16 24 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 25 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 26 H 0.05 1.94 5.73 -2.38 -0.01 1.92 16 27 H 0.08 4.48 5.94 -2.38 -0.01 4.47 16 28 H 0.04 2.17 6.50 -2.39 -0.02 2.16 16 29 H 0.27 14.81 8.31 -92.70 -0.77 14.04 16 30 H 0.15 2.54 6.45 -2.38 -0.02 2.52 16 31 H 0.14 2.60 7.74 -2.39 -0.02 2.58 16 32 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.07 1.44 6.37 -2.39 -0.02 1.43 16 34 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.13 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.04 1.04 6.11 -2.39 -0.01 1.02 16 37 H 0.07 1.19 8.14 -2.39 -0.02 1.18 16 38 H 0.07 1.27 6.42 -2.39 -0.02 1.26 16 39 H 0.02 0.71 5.27 -2.39 -0.01 0.70 16 40 H 0.06 1.31 6.53 -2.39 -0.02 1.29 16 41 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -74.39 314.88 6.42 -67.97 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: 1.02 Total: 11.76 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: 4.63 Total: 0.60 kcal Atomic # 7 Polarization: -78.57 SS G_CDS: -1.18 Total: -79.75 kcal Atomic # 8 Polarization: -48.25 SS G_CDS: -0.09 Total: -48.34 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Total: -74.39 6.42 -67.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054178922.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.198 kcal (2) G-P(sol) polarization free energy of solvation -74.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds