Wall clock time and date at job start Mon Mar 30 2020 06:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47230 * 2 1 4 4 H 1.09003 * 109.46613 * 305.23555 * 3 2 1 5 5 C 1.50700 * 109.47376 * 185.23767 * 3 2 1 6 6 H 1.07990 * 120.00334 * 239.99617 * 5 3 2 7 7 C 1.37882 * 119.99563 * 59.99742 * 5 3 2 8 8 N 1.31510 * 120.00073 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 119.99722 * 180.02562 * 7 5 3 10 10 H 1.48491 * 109.47744 * 89.99662 * 9 7 5 11 11 H 1.48504 * 109.46867 * 209.99979 * 9 7 5 12 12 H 1.48497 * 109.46782 * 329.99143 * 9 7 5 13 13 N 1.46897 * 109.47634 * 65.23459 * 3 2 1 14 14 C 1.46897 * 111.00326 * 208.04783 * 13 3 2 15 15 H 1.08995 * 109.47078 * 33.50736 * 14 13 3 16 16 C 1.53002 * 109.46682 * 273.50925 * 14 13 3 17 17 C 1.52999 * 109.47210 * 153.51360 * 14 13 3 18 18 C 1.50703 * 109.46895 * 294.99693 * 17 14 13 19 19 C 1.33383 * 125.20497 * 89.72208 * 18 17 14 20 20 C 1.38421 * 114.92130 * 179.86156 * 19 18 17 21 21 C 1.33380 * 114.92107 * 0.42752 * 20 19 18 22 22 C 1.50707 * 125.20250 * 179.75656 * 21 20 19 23 23 S 1.75880 * 109.59512 * 359.77304 * 21 20 19 24 24 H 1.09001 * 109.46942 * 294.47010 * 1 2 3 25 25 H 1.08998 * 109.47065 * 54.47239 * 1 2 3 26 26 H 1.08999 * 109.46992 * 174.47468 * 1 2 3 27 27 H 1.08993 * 109.47424 * 239.99397 * 2 1 3 28 28 H 1.09002 * 109.47000 * 119.99754 * 2 1 3 29 29 H 0.97006 * 119.99850 * 179.97438 * 8 7 5 30 30 H 1.00904 * 110.99927 * 84.08924 * 13 3 2 31 31 H 1.08995 * 109.47735 * 299.99713 * 16 14 13 32 32 H 1.08999 * 109.47487 * 60.00577 * 16 14 13 33 33 H 1.09008 * 109.47030 * 179.97438 * 16 14 13 34 34 H 1.08993 * 109.47772 * 54.99702 * 17 14 13 35 35 H 1.08997 * 109.47072 * 174.99997 * 17 14 13 36 36 H 1.08001 * 122.53951 * 0.02562 * 19 18 17 37 37 H 1.08010 * 122.53811 * 180.20379 * 20 19 18 38 38 H 1.08999 * 109.46941 * 179.97438 * 22 21 20 39 39 H 1.09002 * 109.46659 * 299.99274 * 22 21 20 40 40 H 1.08998 * 109.47498 * 59.99443 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6021 1.9826 -0.8394 5 6 3.5415 1.4445 -0.1297 6 1 4.1498 1.8880 0.6445 7 6 4.1384 0.8800 -1.2370 8 7 3.3977 0.3395 -2.1797 9 14 5.9996 0.8819 -1.3975 10 1 6.5510 -0.3508 -0.7800 11 1 6.3724 0.9252 -2.8343 12 1 6.5548 2.0730 -0.7060 13 7 1.6564 2.0976 1.2575 14 6 1.5065 3.5471 1.0717 15 1 1.1281 3.7477 0.0695 16 6 2.8656 4.2271 1.2493 17 6 0.5229 4.0951 2.1076 18 6 -0.8459 3.5173 1.8553 19 6 -1.3117 2.3845 2.3835 20 6 -2.6026 2.0538 2.0090 21 6 -3.1819 2.9134 1.1696 22 6 -4.5752 2.7775 0.6115 23 16 -2.0709 4.2296 0.8134 24 1 -0.3633 0.4257 0.9354 25 1 -0.3633 0.5972 -0.8363 26 1 -0.3633 -1.0229 -0.0989 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 3.8177 -0.0573 -2.9589 30 1 2.3208 1.8936 1.9890 31 1 3.2441 4.0265 2.2516 32 1 3.5664 3.8367 0.5114 33 1 2.7546 5.3026 1.1110 34 1 0.8558 3.8173 3.1075 35 1 0.4791 5.1812 2.0279 36 1 -0.7269 1.7730 3.0548 37 1 -3.1016 1.1651 2.3664 38 1 -4.7872 3.6209 -0.0457 39 1 -4.6512 1.8483 0.0467 40 1 -5.2949 2.7651 1.4299 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070716671.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:23 Heat of formation + Delta-G solvation = 8.369528 kcal Electronic energy + Delta-G solvation = -18826.208440 eV Core-core repulsion = 16152.620561 eV Total energy + Delta-G solvation = -2673.587879 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -37.99397 -36.66912 -34.00680 -31.93389 -31.38653 -29.15265 -27.70564 -25.98759 -24.27341 -22.71953 -22.25109 -20.17573 -19.51250 -18.38533 -16.54777 -16.41049 -15.07209 -14.81521 -14.27415 -13.91144 -13.71389 -13.24481 -13.05761 -12.90023 -12.66017 -12.38763 -12.20926 -11.77143 -11.68520 -11.43372 -11.27360 -11.13730 -10.96016 -10.81331 -10.72653 -10.62410 -10.38907 -10.22363 -10.05948 -9.52781 -9.34945 -8.96702 -8.34876 -8.05875 -7.92666 -7.17196 -5.96626 -4.09017 1.42611 1.99655 2.38580 3.22902 3.27068 3.34675 3.36308 4.40524 5.09004 5.20425 5.24983 5.32204 5.37026 5.58214 5.66307 5.77810 5.89475 5.92368 6.04823 6.13130 6.16571 6.21843 6.44646 6.49227 6.59156 6.60762 6.71438 6.80795 6.82816 6.97790 7.02530 7.22411 7.28159 7.52552 7.65408 7.82424 8.15727 8.20099 8.39789 8.73109 9.05185 9.57949 11.03153 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.026043 B = 0.005563 C = 0.005003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.875007 B = 5031.978477 C = 5595.121594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.104 4.104 3 C 0.220 3.780 4 H 0.029 0.971 5 C -0.541 4.541 6 H 0.056 0.944 7 C 0.067 3.933 8 N -0.884 5.884 9 Si 0.885 3.115 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.276 1.276 13 N -0.678 5.678 14 C 0.099 3.901 15 H 0.069 0.931 16 C -0.180 4.180 17 C -0.040 4.040 18 C -0.136 4.136 19 C -0.120 4.120 20 C -0.131 4.131 21 C -0.195 4.195 22 C -0.076 4.076 23 S 0.062 5.938 24 H 0.053 0.947 25 H 0.033 0.967 26 H 0.019 0.981 27 H 0.087 0.913 28 H 0.028 0.972 29 H 0.260 0.740 30 H 0.326 0.674 31 H 0.046 0.954 32 H 0.080 0.920 33 H 0.040 0.960 34 H 0.076 0.924 35 H 0.063 0.937 36 H 0.137 0.863 37 H 0.130 0.870 38 H 0.061 0.939 39 H 0.071 0.929 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.774 5.957 7.247 14.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.143 4.143 3 C 0.112 3.888 4 H 0.047 0.953 5 C -0.580 4.580 6 H 0.074 0.926 7 C -0.136 4.136 8 N -0.523 5.523 9 Si 0.713 3.287 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.201 1.201 13 N -0.306 5.306 14 C -0.013 4.013 15 H 0.087 0.913 16 C -0.239 4.239 17 C -0.080 4.080 18 C -0.253 4.253 19 C -0.149 4.149 20 C -0.161 4.161 21 C -0.312 4.312 22 C -0.135 4.135 23 S 0.325 5.675 24 H 0.072 0.928 25 H 0.052 0.948 26 H 0.038 0.962 27 H 0.105 0.895 28 H 0.047 0.953 29 H 0.070 0.930 30 H 0.143 0.857 31 H 0.065 0.935 32 H 0.099 0.901 33 H 0.059 0.941 34 H 0.095 0.905 35 H 0.081 0.919 36 H 0.155 0.845 37 H 0.148 0.852 38 H 0.080 0.920 39 H 0.090 0.910 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -11.528 7.018 6.079 14.802 hybrid contribution 2.205 -1.138 0.479 2.527 sum -9.323 5.880 6.557 12.826 Atomic orbital electron populations 1.21702 0.98914 0.97857 1.00729 1.21475 0.92120 0.99351 1.01323 1.19144 0.92644 0.91114 0.85930 0.95328 1.21929 0.92831 1.37922 1.05347 0.92578 1.24938 0.97617 0.95130 0.95874 1.69888 1.34660 1.38341 1.09400 0.86713 0.86442 0.78336 0.77172 1.20739 1.21316 1.20117 1.60900 1.52958 1.06223 1.10541 1.21367 0.92580 0.90030 0.97353 0.91318 1.22596 0.99588 0.99505 1.02201 1.20310 0.89089 0.98092 1.00556 1.24214 0.98924 1.00098 1.02019 1.19890 0.94971 0.96537 1.03452 1.20008 0.95642 1.00429 1.00052 1.24228 1.00673 1.00438 1.05833 1.20239 0.90525 1.02373 1.00354 1.84049 1.07287 1.26696 1.49495 0.92844 0.94827 0.96172 0.89476 0.95349 0.92983 0.85722 0.93536 0.90100 0.94117 0.90533 0.91857 0.84499 0.85223 0.91982 0.90991 0.91235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.85 9.74 37.16 0.36 -2.49 16 2 C -0.10 -2.49 5.45 -26.73 -0.15 -2.64 16 3 C 0.22 5.27 1.98 -68.87 -0.14 5.14 16 4 H 0.03 0.79 7.35 -51.93 -0.38 0.40 16 5 C -0.54 -14.05 7.13 -34.44 -0.25 -14.30 16 6 H 0.06 1.43 6.76 -52.49 -0.35 1.08 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.71 16 8 N -0.88 -24.92 11.29 55.43 0.63 -24.29 16 9 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 12 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 13 N -0.68 -13.42 5.19 -100.96 -0.52 -13.94 16 14 C 0.10 1.76 2.58 -67.71 -0.17 1.58 16 15 H 0.07 1.39 7.37 -51.93 -0.38 1.01 16 16 C -0.18 -3.08 8.79 37.16 0.33 -2.75 16 17 C -0.04 -0.60 5.39 -27.88 -0.15 -0.75 16 18 C -0.14 -2.11 5.53 -36.00 -0.20 -2.31 16 19 C -0.12 -1.84 8.65 -41.21 -0.36 -2.19 16 20 C -0.13 -1.87 10.05 -41.21 -0.41 -2.28 16 21 C -0.19 -2.70 6.51 -36.00 -0.23 -2.94 16 22 C -0.08 -0.81 10.38 36.01 0.37 -0.44 16 23 S 0.06 0.90 23.31 -107.50 -2.51 -1.60 16 24 H 0.05 1.07 6.63 -51.93 -0.34 0.72 16 25 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.09 2.35 5.95 -51.93 -0.31 2.04 16 28 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 30 H 0.33 6.45 8.06 -39.29 -0.32 6.13 16 31 H 0.05 0.73 8.13 -51.93 -0.42 0.31 16 32 H 0.08 1.63 6.07 -51.93 -0.32 1.32 16 33 H 0.04 0.61 8.14 -51.92 -0.42 0.19 16 34 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.14 2.08 8.06 -52.49 -0.42 1.65 16 37 H 0.13 1.62 8.06 -52.48 -0.42 1.20 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 332.14 15.07 5.01 5.01 Total: -1.00 -27.11 332.14 -10.12 -37.23 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -6.61 Total: 6.35 kcal Atomic # 6 Polarization: -23.57 SS G_CDS: -1.09 Total: -24.66 kcal Atomic # 7 Polarization: -38.33 SS G_CDS: 0.10 Total: -38.23 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: 0.90 SS G_CDS: -2.51 Total: -1.60 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -27.11 -10.12 -37.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070716671.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.601 kcal (2) G-P(sol) polarization free energy of solvation -27.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds