Wall clock time and date at job start Mon Mar 30 2020 06:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47230 * 2 1 4 4 H 1.09003 * 109.46613 * 305.23555 * 3 2 1 5 5 C 1.50700 * 109.47376 * 185.23767 * 3 2 1 6 6 H 1.07990 * 120.00334 * 239.99617 * 5 3 2 7 7 C 1.37882 * 119.99563 * 59.99742 * 5 3 2 8 8 N 1.31510 * 120.00073 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 119.99722 * 180.02562 * 7 5 3 10 10 H 1.48491 * 109.47744 * 89.99662 * 9 7 5 11 11 H 1.48504 * 109.46867 * 209.99979 * 9 7 5 12 12 H 1.48497 * 109.46782 * 329.99143 * 9 7 5 13 13 N 1.46897 * 109.47634 * 65.23459 * 3 2 1 14 14 C 1.46897 * 111.00326 * 208.04783 * 13 3 2 15 15 H 1.08995 * 109.47078 * 33.50736 * 14 13 3 16 16 C 1.53002 * 109.46682 * 273.50925 * 14 13 3 17 17 C 1.52999 * 109.47210 * 153.51360 * 14 13 3 18 18 C 1.50703 * 109.46895 * 294.99693 * 17 14 13 19 19 C 1.33383 * 125.20497 * 89.72208 * 18 17 14 20 20 C 1.38421 * 114.92130 * 179.86156 * 19 18 17 21 21 C 1.33380 * 114.92107 * 0.42752 * 20 19 18 22 22 C 1.50707 * 125.20250 * 179.75656 * 21 20 19 23 23 S 1.75880 * 109.59512 * 359.77304 * 21 20 19 24 24 H 1.09001 * 109.46942 * 294.47010 * 1 2 3 25 25 H 1.08998 * 109.47065 * 54.47239 * 1 2 3 26 26 H 1.08999 * 109.46992 * 174.47468 * 1 2 3 27 27 H 1.08993 * 109.47424 * 239.99397 * 2 1 3 28 28 H 1.09002 * 109.47000 * 119.99754 * 2 1 3 29 29 H 0.97006 * 119.99850 * 179.97438 * 8 7 5 30 30 H 1.00904 * 110.99927 * 84.08924 * 13 3 2 31 31 H 1.08995 * 109.47735 * 299.99713 * 16 14 13 32 32 H 1.08999 * 109.47487 * 60.00577 * 16 14 13 33 33 H 1.09008 * 109.47030 * 179.97438 * 16 14 13 34 34 H 1.08993 * 109.47772 * 54.99702 * 17 14 13 35 35 H 1.08997 * 109.47072 * 174.99997 * 17 14 13 36 36 H 1.08001 * 122.53951 * 0.02562 * 19 18 17 37 37 H 1.08010 * 122.53811 * 180.20379 * 20 19 18 38 38 H 1.08999 * 109.46941 * 179.97438 * 22 21 20 39 39 H 1.09002 * 109.46659 * 299.99274 * 22 21 20 40 40 H 1.08998 * 109.47498 * 59.99443 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6021 1.9826 -0.8394 5 6 3.5415 1.4445 -0.1297 6 1 4.1498 1.8880 0.6445 7 6 4.1384 0.8800 -1.2370 8 7 3.3977 0.3395 -2.1797 9 14 5.9996 0.8819 -1.3975 10 1 6.5510 -0.3508 -0.7800 11 1 6.3724 0.9252 -2.8343 12 1 6.5548 2.0730 -0.7060 13 7 1.6564 2.0976 1.2575 14 6 1.5065 3.5471 1.0717 15 1 1.1281 3.7477 0.0695 16 6 2.8656 4.2271 1.2493 17 6 0.5229 4.0951 2.1076 18 6 -0.8459 3.5173 1.8553 19 6 -1.3117 2.3845 2.3835 20 6 -2.6026 2.0538 2.0090 21 6 -3.1819 2.9134 1.1696 22 6 -4.5752 2.7775 0.6115 23 16 -2.0709 4.2296 0.8134 24 1 -0.3633 0.4257 0.9354 25 1 -0.3633 0.5972 -0.8363 26 1 -0.3633 -1.0229 -0.0989 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 3.8177 -0.0573 -2.9589 30 1 2.3208 1.8936 1.9890 31 1 3.2441 4.0265 2.2516 32 1 3.5664 3.8367 0.5114 33 1 2.7546 5.3026 1.1110 34 1 0.8558 3.8173 3.1075 35 1 0.4791 5.1812 2.0279 36 1 -0.7269 1.7730 3.0548 37 1 -3.1016 1.1651 2.3664 38 1 -4.7872 3.6209 -0.0457 39 1 -4.6512 1.8483 0.0467 40 1 -5.2949 2.7651 1.4299 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070716671.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:23 Heat of formation + Delta-G solvation = -5.114542 kcal Electronic energy + Delta-G solvation = -18826.793153 eV Core-core repulsion = 16152.620561 eV Total energy + Delta-G solvation = -2674.172592 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.29712 -38.13399 -35.68145 -33.61600 -32.86031 -30.63878 -28.99663 -27.90619 -25.41470 -24.56724 -23.43548 -21.64753 -21.39327 -19.53750 -18.49644 -17.61886 -16.85226 -16.11097 -15.91641 -15.34224 -15.07140 -14.64152 -14.57436 -14.22364 -13.90837 -13.70929 -13.56714 -13.35693 -13.15664 -13.04052 -12.85049 -12.66178 -12.49124 -12.44787 -12.23299 -12.08799 -11.91980 -11.72936 -11.47779 -11.42996 -11.16508 -10.88178 -10.41450 -9.21155 -9.08944 -8.87741 -7.99702 -6.20883 0.30082 0.88834 1.25805 1.38666 1.40803 1.48566 2.09085 2.42307 3.19276 3.74178 3.99379 4.14349 4.34338 4.49843 4.52757 4.57706 4.65147 4.74410 4.80321 4.80720 4.84245 4.95709 4.98865 5.00856 5.10009 5.18911 5.22365 5.32761 5.46184 5.47167 5.52200 5.61133 5.66700 5.71149 5.83726 5.88044 6.17940 6.27175 6.48650 6.92706 7.13562 7.50157 8.96082 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.026043 B = 0.005563 C = 0.005003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.875007 B = 5031.978477 C = 5595.121594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.100 4.100 3 C 0.231 3.769 4 H -0.012 1.012 5 C -0.545 4.545 6 H 0.059 0.941 7 C 0.017 3.983 8 N -0.915 5.915 9 Si 0.945 3.055 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.270 1.270 13 N -0.666 5.666 14 C 0.101 3.899 15 H 0.038 0.962 16 C -0.173 4.173 17 C -0.030 4.030 18 C -0.157 4.157 19 C -0.124 4.124 20 C -0.146 4.146 21 C -0.192 4.192 22 C -0.077 4.077 23 S 0.047 5.953 24 H 0.066 0.934 25 H 0.017 0.983 26 H 0.036 0.964 27 H 0.055 0.945 28 H 0.028 0.972 29 H 0.258 0.742 30 H 0.330 0.670 31 H 0.063 0.937 32 H 0.045 0.955 33 H 0.062 0.938 34 H 0.090 0.910 35 H 0.079 0.921 36 H 0.138 0.862 37 H 0.148 0.852 38 H 0.067 0.933 39 H 0.078 0.922 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.298 6.334 8.697 15.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.138 4.138 3 C 0.122 3.878 4 H 0.006 0.994 5 C -0.584 4.584 6 H 0.077 0.923 7 C -0.182 4.182 8 N -0.555 5.555 9 Si 0.772 3.228 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.194 1.194 13 N -0.294 5.294 14 C -0.011 4.011 15 H 0.057 0.943 16 C -0.231 4.231 17 C -0.070 4.070 18 C -0.273 4.273 19 C -0.153 4.153 20 C -0.176 4.176 21 C -0.309 4.309 22 C -0.136 4.136 23 S 0.309 5.691 24 H 0.085 0.915 25 H 0.036 0.964 26 H 0.055 0.945 27 H 0.073 0.927 28 H 0.047 0.953 29 H 0.068 0.932 30 H 0.147 0.853 31 H 0.082 0.918 32 H 0.064 0.936 33 H 0.081 0.919 34 H 0.109 0.891 35 H 0.098 0.902 36 H 0.156 0.844 37 H 0.166 0.834 38 H 0.087 0.913 39 H 0.097 0.903 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -12.052 7.410 7.549 16.036 hybrid contribution 2.305 -1.228 0.027 2.612 sum -9.747 6.181 7.576 13.806 Atomic orbital electron populations 1.21531 0.96702 0.98708 1.00698 1.21333 0.94042 0.98798 0.99667 1.18835 0.91475 0.91055 0.86393 0.99401 1.22248 0.93969 1.37021 1.05173 0.92296 1.25660 1.01585 0.95152 0.95832 1.70033 1.36195 1.39388 1.09884 0.85756 0.81711 0.78454 0.76867 1.20352 1.21528 1.19425 1.60821 1.52474 1.07575 1.08545 1.21354 0.93869 0.88864 0.96994 0.94319 1.22470 0.98065 1.00640 1.01969 1.20192 0.87974 0.98883 0.99920 1.24325 0.99424 1.00738 1.02849 1.20055 0.95558 0.96362 1.03288 1.20232 0.95499 1.01359 1.00507 1.24677 1.01668 0.99437 1.05077 1.20361 0.89032 1.02967 1.01214 1.84073 1.07781 1.27561 1.49635 0.91495 0.96397 0.94511 0.92663 0.95296 0.93226 0.85319 0.91833 0.93576 0.91923 0.89120 0.90203 0.84438 0.83405 0.91349 0.90318 0.89152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.99 9.74 71.98 0.70 -4.29 16 2 C -0.10 -4.82 5.45 30.59 0.17 -4.66 16 3 C 0.23 11.33 1.98 44.17 0.09 11.42 16 4 H -0.01 -0.68 7.35 -2.39 -0.02 -0.70 16 5 C -0.54 -28.60 7.13 25.60 0.18 -28.42 16 6 H 0.06 3.00 6.76 -2.92 -0.02 2.98 16 7 C 0.02 0.93 5.29 84.66 0.45 1.37 16 8 N -0.92 -52.86 11.29 21.45 0.24 -52.62 16 9 Si 0.95 43.27 29.54 68.60 2.03 45.29 16 10 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 11 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 12 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 13 N -0.67 -26.14 5.19 -473.33 -2.46 -28.60 16 14 C 0.10 3.54 2.58 44.92 0.12 3.66 16 15 H 0.04 1.60 7.37 -2.39 -0.02 1.58 16 16 C -0.17 -5.71 8.79 71.98 0.63 -5.08 16 17 C -0.03 -0.84 5.39 29.85 0.16 -0.68 16 18 C -0.16 -4.68 5.53 24.59 0.14 -4.55 16 19 C -0.12 -3.60 8.65 21.21 0.18 -3.42 16 20 C -0.15 -3.89 10.05 21.21 0.21 -3.68 16 21 C -0.19 -4.97 6.51 24.59 0.16 -4.81 16 22 C -0.08 -1.46 10.38 71.24 0.74 -0.72 16 23 S 0.05 1.32 23.31 -56.49 -1.32 0.01 16 24 H 0.07 2.60 6.63 -2.39 -0.02 2.58 16 25 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.05 3.05 5.95 -2.39 -0.01 3.03 16 28 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.26 14.34 8.31 -92.70 -0.77 13.57 16 30 H 0.33 12.69 8.06 -89.69 -0.72 11.97 16 31 H 0.06 1.87 8.13 -2.39 -0.02 1.85 16 32 H 0.05 1.85 6.07 -2.39 -0.01 1.83 16 33 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 34 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 35 H 0.08 1.99 8.14 -2.39 -0.02 1.98 16 36 H 0.14 3.93 8.06 -2.91 -0.02 3.91 16 37 H 0.15 3.33 8.06 -2.91 -0.02 3.30 16 38 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -58.71 332.14 2.71 -56.00 By element: Atomic # 1 Polarization: 23.48 SS G_CDS: 0.29 Total: 23.77 kcal Atomic # 6 Polarization: -47.78 SS G_CDS: 3.93 Total: -43.85 kcal Atomic # 7 Polarization: -79.00 SS G_CDS: -2.22 Total: -81.22 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.29 kcal Atomic # 16 Polarization: 1.32 SS G_CDS: -1.32 Total: 0.01 kcal Total: -58.71 2.71 -56.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070716671.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.889 kcal (2) G-P(sol) polarization free energy of solvation -58.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds