Wall clock time and date at job start Mon Mar 30 2020 06:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08992 * 109.46977 * 2 1 4 4 C 1.52997 * 109.46746 * 119.99683 * 2 1 3 5 5 C 1.50701 * 109.47123 * 183.06342 * 4 2 1 6 6 C 1.33392 * 125.19760 * 84.82705 * 5 4 2 7 7 C 1.38425 * 114.91436 * 180.02562 * 6 5 4 8 8 C 1.33386 * 114.92429 * 0.24480 * 7 6 5 9 9 S 1.75880 * 125.20585 * 264.86830 * 5 4 2 10 10 N 1.46900 * 109.47269 * 239.99695 * 2 1 3 11 11 C 1.46904 * 110.99851 * 73.01828 * 10 2 1 12 12 C 1.46903 * 111.00053 * 309.06465 * 10 2 1 13 13 C 1.52994 * 109.47352 * 190.00019 * 12 10 2 14 14 C 1.52997 * 109.47289 * 179.97438 * 13 12 10 15 15 C 1.50707 * 109.46881 * 179.97438 * 14 13 12 16 16 H 1.07994 * 120.00159 * 0.02562 * 15 14 13 17 17 C 1.37874 * 119.99732 * 180.02562 * 15 14 13 18 18 N 1.31520 * 120.00019 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00122 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.46724 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.46916 * 119.99998 * 19 17 15 22 22 H 1.48496 * 109.47162 * 239.99721 * 19 17 15 23 23 H 1.09003 * 109.47398 * 300.00577 * 1 2 3 24 24 H 1.09007 * 109.46924 * 60.00610 * 1 2 3 25 25 H 1.09001 * 109.47051 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47502 * 63.06485 * 4 2 1 27 27 H 1.09009 * 109.47246 * 303.06392 * 4 2 1 28 28 H 1.07992 * 122.54389 * 0.05978 * 6 5 4 29 29 H 1.08002 * 122.53978 * 179.97438 * 7 6 5 30 30 H 1.08001 * 125.20498 * 179.76288 * 8 7 6 31 31 H 1.08995 * 109.47141 * 53.76460 * 11 10 2 32 32 H 1.08996 * 109.46456 * 173.76613 * 11 10 2 33 33 H 1.09006 * 109.47015 * 293.75842 * 11 10 2 34 34 H 1.08997 * 109.47116 * 310.00373 * 12 10 2 35 35 H 1.09005 * 109.47084 * 70.00071 * 12 10 2 36 36 H 1.09001 * 109.46930 * 299.99956 * 13 12 10 37 37 H 1.09005 * 109.46983 * 59.99990 * 13 12 10 38 38 H 1.09001 * 109.47224 * 299.99929 * 14 13 12 39 39 H 1.09005 * 109.46991 * 60.00148 * 14 13 12 40 40 H 0.97005 * 119.99750 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5451 -0.6558 1.2879 6 6 4.2582 0.3574 1.7821 7 6 5.6309 0.1946 1.7090 8 6 6.0325 -0.9484 1.1508 9 16 4.6299 -1.9032 0.6874 10 7 2.0198 -0.6926 -1.1994 11 6 1.8176 0.1284 -2.4007 12 6 1.3804 -2.0070 -1.3463 13 6 2.0863 -2.7970 -2.4500 14 6 1.4209 -4.1662 -2.6025 15 6 2.1159 -4.9442 -3.6901 16 1 2.9491 -4.5060 -4.2193 17 6 1.6879 -6.2153 -4.0096 18 7 0.6735 -6.7491 -3.3648 19 14 2.5489 -7.1793 -5.3582 20 1 3.6518 -6.3617 -5.9241 21 1 3.1043 -8.4347 -4.7918 22 1 1.5754 -7.5082 -6.4303 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 1.7222 -1.7635 1.2223 27 1 1.6324 -0.2400 2.1384 28 1 3.7995 1.2376 2.2075 29 1 6.3243 0.9387 2.0722 30 1 7.0614 -1.2434 1.0071 31 1 2.2660 1.1103 -2.2495 32 1 2.2870 -0.3576 -3.2560 33 1 0.7497 0.2415 -2.5881 34 1 1.4523 -2.5531 -0.4057 35 1 0.3311 -1.8733 -1.6095 36 1 2.0144 -2.2509 -3.3905 37 1 3.1357 -2.9308 -2.1868 38 1 1.4932 -4.7122 -1.6618 39 1 0.3715 -4.0329 -2.8655 40 1 0.3722 -7.6432 -3.5899 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080834804.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:00 Heat of formation + Delta-G solvation = 19.017749 kcal Electronic energy + Delta-G solvation = -18315.972377 eV Core-core repulsion = 15642.846239 eV Total energy + Delta-G solvation = -2673.126137 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.83890 -37.33835 -34.04140 -32.59868 -31.07321 -29.49699 -27.08857 -26.31813 -24.88268 -23.23904 -22.54352 -20.34993 -19.33076 -18.83419 -16.98731 -16.19227 -15.68122 -15.12659 -14.92239 -14.62155 -14.32584 -13.76673 -13.45702 -12.93240 -12.76065 -12.49131 -12.30127 -12.21398 -12.13685 -11.64543 -11.53476 -11.48679 -11.13797 -11.10107 -10.82209 -10.72541 -10.44977 -10.42803 -10.25336 -9.53548 -9.27070 -8.99755 -8.41950 -8.30587 -8.17971 -7.90455 -5.95850 -3.97265 1.25081 1.94460 2.33663 2.92213 3.33647 3.41065 3.45756 4.18449 4.50612 4.80153 4.99344 5.15710 5.22094 5.39020 5.40007 5.41359 5.52091 5.58745 5.69826 5.72641 5.79381 5.83653 5.86992 5.95750 6.07229 6.20733 6.22112 6.29685 6.43152 6.48386 6.68770 6.77467 6.86327 7.19463 7.43718 7.47566 7.73920 7.89189 8.05294 8.49249 9.10243 9.66591 11.15676 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.019853 B = 0.004855 C = 0.004237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.997989 B = 5766.119982 C = 6606.816669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.085 3.915 3 H 0.079 0.921 4 C -0.046 4.046 5 C -0.144 4.144 6 C -0.162 4.162 7 C -0.137 4.137 8 C -0.238 4.238 9 S 0.149 5.851 10 N -0.531 5.531 11 C 0.026 3.974 12 C 0.053 3.947 13 C -0.104 4.104 14 C 0.022 3.978 15 C -0.515 4.515 16 H 0.055 0.945 17 C 0.056 3.944 18 N -0.897 5.897 19 Si 0.889 3.111 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.285 1.285 23 H 0.057 0.943 24 H 0.057 0.943 25 H 0.064 0.936 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.130 0.870 29 H 0.129 0.871 30 H 0.156 0.844 31 H 0.057 0.943 32 H 0.074 0.926 33 H 0.023 0.977 34 H 0.066 0.934 35 H 0.031 0.969 36 H 0.046 0.954 37 H 0.056 0.944 38 H 0.014 0.986 39 H 0.012 0.988 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.333 15.640 10.602 19.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.024 4.024 3 H 0.097 0.903 4 C -0.085 4.085 5 C -0.263 4.263 6 C -0.192 4.192 7 C -0.168 4.168 8 C -0.374 4.374 9 S 0.414 5.586 10 N -0.254 5.254 11 C -0.122 4.122 12 C -0.074 4.074 13 C -0.142 4.142 14 C -0.015 4.015 15 C -0.553 4.553 16 H 0.073 0.927 17 C -0.145 4.145 18 N -0.537 5.537 19 Si 0.718 3.282 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.211 1.211 23 H 0.076 0.924 24 H 0.076 0.924 25 H 0.083 0.917 26 H 0.096 0.904 27 H 0.099 0.901 28 H 0.147 0.853 29 H 0.147 0.853 30 H 0.174 0.826 31 H 0.076 0.924 32 H 0.092 0.908 33 H 0.041 0.959 34 H 0.084 0.916 35 H 0.049 0.951 36 H 0.064 0.936 37 H 0.075 0.925 38 H 0.033 0.967 39 H 0.030 0.970 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 4.568 13.983 9.977 17.775 hybrid contribution -0.212 0.930 -0.241 0.984 sum 4.356 14.914 9.736 18.335 Atomic orbital electron populations 1.22482 0.97342 1.02850 1.01894 1.21701 0.92355 0.97807 0.90561 0.90321 1.20290 0.88407 1.02148 0.97676 1.24306 0.99250 0.98498 1.04202 1.19934 0.93314 1.00021 1.05959 1.20000 0.95567 0.98174 1.03086 1.25663 1.02754 1.00452 1.08537 1.84791 0.95128 1.20066 1.58604 1.62275 1.57713 1.03595 1.01862 1.22362 0.99044 0.97166 0.93654 1.22356 0.95989 0.88583 1.00506 1.21646 0.99785 0.97355 0.95459 1.19070 0.95588 0.90039 0.96831 1.21290 1.15669 0.99711 1.18631 0.92671 1.25019 0.95145 0.97762 0.96573 1.69982 1.26351 1.15816 1.41532 0.86573 0.79627 0.80033 0.82012 1.19729 1.21042 1.21101 0.92389 0.92440 0.91659 0.90353 0.90051 0.85250 0.85290 0.82638 0.92393 0.90774 0.95894 0.91554 0.95079 0.93556 0.92510 0.96726 0.96990 0.93169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.09 8.41 37.16 0.31 -1.78 16 2 C 0.09 1.03 2.30 -67.71 -0.16 0.88 16 3 H 0.08 0.91 7.92 -51.93 -0.41 0.50 16 4 C -0.05 -0.54 5.14 -27.88 -0.14 -0.69 16 5 C -0.14 -1.87 5.44 -36.00 -0.20 -2.07 16 6 C -0.16 -1.92 10.05 -41.21 -0.41 -2.34 16 7 C -0.14 -1.60 10.18 -41.21 -0.42 -2.01 16 8 C -0.24 -2.94 11.23 29.04 0.33 -2.62 16 9 S 0.15 2.13 23.33 -107.50 -2.51 -0.38 16 10 N -0.53 -7.77 4.35 -234.89 -1.02 -8.79 16 11 C 0.03 0.35 9.00 60.07 0.54 0.89 16 12 C 0.05 0.91 3.81 -3.83 -0.01 0.89 16 13 C -0.10 -2.19 5.07 -26.74 -0.14 -2.33 16 14 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 15 C -0.51 -14.77 9.11 -34.44 -0.31 -15.08 16 16 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.90 -27.23 13.29 55.43 0.74 -26.50 16 19 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 20 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 23 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.06 0.65 6.94 -51.92 -0.36 0.29 16 25 H 0.06 0.81 6.54 -51.93 -0.34 0.47 16 26 H 0.08 1.02 6.37 -51.93 -0.33 0.69 16 27 H 0.08 0.79 8.14 -51.92 -0.42 0.37 16 28 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 29 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 30 H 0.16 1.61 8.06 -52.49 -0.42 1.19 16 31 H 0.06 0.70 7.98 -51.93 -0.41 0.28 16 32 H 0.07 1.09 6.58 -51.93 -0.34 0.75 16 33 H 0.02 0.30 6.98 -51.93 -0.36 -0.06 16 34 H 0.07 1.15 6.19 -51.93 -0.32 0.83 16 35 H 0.03 0.54 6.81 -51.93 -0.35 0.19 16 36 H 0.05 0.96 6.60 -51.93 -0.34 0.62 16 37 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 40 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 331.84 15.07 5.00 5.00 Total: -1.00 -30.36 331.84 -10.17 -40.53 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: -6.50 Total: -2.49 kcal Atomic # 6 Polarization: -23.44 SS G_CDS: -0.85 Total: -24.29 kcal Atomic # 7 Polarization: -35.00 SS G_CDS: -0.29 Total: -35.29 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Atomic # 16 Polarization: 2.13 SS G_CDS: -2.51 Total: -0.38 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.36 -10.17 -40.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080834804.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.544 kcal (2) G-P(sol) polarization free energy of solvation -30.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds