Wall clock time and date at job start Mon Mar 30 2020 06:30:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08990 * 109.47277 * 2 1 4 4 C 1.53001 * 109.46971 * 240.00281 * 2 1 3 5 5 C 1.50703 * 109.47235 * 65.19181 * 4 2 1 6 6 C 1.33387 * 125.20149 * 84.25491 * 5 4 2 7 7 C 1.38415 * 114.92345 * 179.97438 * 6 5 4 8 8 C 1.33395 * 114.92168 * 0.24290 * 7 6 5 9 9 S 1.75883 * 125.20439 * 264.21105 * 5 4 2 10 10 N 1.46901 * 109.47482 * 120.00434 * 2 1 3 11 11 C 1.46893 * 111.00146 * 172.00330 * 10 2 1 12 12 C 1.46899 * 110.99512 * 295.96180 * 10 2 1 13 13 C 1.53001 * 109.47157 * 170.00264 * 12 10 2 14 14 C 1.53000 * 109.47392 * 179.97438 * 13 12 10 15 15 C 1.50698 * 109.47161 * 179.97438 * 14 13 12 16 16 H 1.08009 * 120.00111 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00019 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00189 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99981 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47208 * 359.97438 * 19 17 15 21 21 H 1.48507 * 109.47045 * 120.00289 * 19 17 15 22 22 H 1.48507 * 109.47169 * 239.99867 * 19 17 15 23 23 H 1.09006 * 109.47041 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47110 * 299.99420 * 1 2 3 25 25 H 1.08994 * 109.47524 * 59.99875 * 1 2 3 26 26 H 1.09002 * 109.47005 * 305.19551 * 4 2 1 27 27 H 1.08998 * 109.47485 * 185.19716 * 4 2 1 28 28 H 1.08003 * 122.53900 * 359.94158 * 6 5 4 29 29 H 1.08004 * 122.54480 * 179.97438 * 7 6 5 30 30 H 1.07997 * 125.20460 * 179.75428 * 8 7 6 31 31 H 1.09006 * 109.46805 * 53.87697 * 11 10 2 32 32 H 1.08999 * 109.46934 * 173.87143 * 11 10 2 33 33 H 1.09001 * 109.47435 * 293.87647 * 11 10 2 34 34 H 1.09002 * 109.46998 * 289.99526 * 12 10 2 35 35 H 1.08997 * 109.47556 * 49.99680 * 12 10 2 36 36 H 1.09002 * 109.46564 * 299.99528 * 13 12 10 37 37 H 1.08997 * 109.47364 * 59.99299 * 13 12 10 38 38 H 1.08997 * 109.46726 * 299.99620 * 14 13 12 39 39 H 1.09003 * 109.46671 * 60.00007 * 14 13 12 40 40 H 0.97004 * 120.00342 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6453 0.0596 -2.4764 6 6 2.3234 1.0906 -2.9827 7 6 1.7678 1.6526 -4.1191 8 6 0.6357 1.0811 -4.5328 9 16 0.2208 -0.2499 -3.4605 10 7 2.0198 -0.6926 1.1994 11 6 3.4756 -0.8796 1.1417 12 6 1.6292 0.0270 2.4190 13 6 1.9336 -0.8401 3.6423 14 6 1.5274 -0.0904 4.9127 15 6 1.8266 -0.9447 6.1175 16 1 2.2625 -1.9247 5.9899 17 6 1.5440 -0.4755 7.3827 18 7 1.0127 0.7175 7.5382 19 14 1.9156 -1.5342 8.8762 20 1 2.5057 -2.8233 8.4347 21 1 2.8771 -0.8254 9.7586 22 1 0.6587 -1.7956 9.6228 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.6026 -1.7185 -1.2971 27 1 3.1260 -0.8026 -1.2041 28 1 3.2366 1.4594 -2.5393 29 1 2.2146 2.4930 -4.6297 30 1 0.0627 1.3875 -5.3955 31 1 3.9587 0.0817 0.9662 32 1 3.8262 -1.2953 2.0864 33 1 3.7222 -1.5638 0.3298 34 1 2.1899 0.9594 2.4861 35 1 0.5620 0.2464 2.3856 36 1 1.3729 -1.7724 3.5753 37 1 3.0007 -1.0594 3.6758 38 1 2.0884 0.8418 4.9795 39 1 0.4602 0.1292 4.8794 40 1 0.8142 1.0479 8.4284 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080834809.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:03 Heat of formation + Delta-G solvation = 19.711189 kcal Electronic energy + Delta-G solvation = -17734.558242 eV Core-core repulsion = 15061.462174 eV Total energy + Delta-G solvation = -2673.096067 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.87016 -37.57129 -34.28800 -32.80537 -30.92436 -29.81825 -27.50754 -26.02638 -24.90008 -23.62588 -22.25287 -20.22777 -19.84219 -19.06507 -17.39065 -16.24788 -15.91965 -15.44317 -14.89136 -14.61484 -14.31647 -14.18943 -13.27397 -13.16885 -12.95361 -12.79264 -12.47105 -12.25412 -12.04596 -11.87362 -11.67452 -11.49370 -11.22348 -11.04189 -10.91468 -10.75076 -10.69054 -10.46019 -10.35090 -9.54508 -9.31266 -9.02503 -8.76405 -8.61790 -8.31772 -8.03565 -5.96961 -3.98793 0.82006 1.46293 1.83816 2.56498 3.33010 3.40339 3.44961 4.07123 4.49338 4.74031 4.85635 4.93477 4.97182 5.23484 5.36645 5.38838 5.42773 5.46240 5.61062 5.68306 5.75390 5.83310 5.90809 5.94281 5.99933 6.09477 6.12377 6.18371 6.26470 6.35709 6.45004 6.74557 6.83214 7.16231 7.40205 7.43020 7.72329 7.87381 8.03942 8.47456 9.08764 9.65146 11.14562 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.050179 B = 0.002947 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.868292 B = 9499.063815 C = 9612.549898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.088 3.912 3 H 0.040 0.960 4 C -0.049 4.049 5 C -0.158 4.158 6 C -0.148 4.148 7 C -0.131 4.131 8 C -0.224 4.224 9 S 0.099 5.901 10 N -0.538 5.538 11 C 0.017 3.983 12 C 0.053 3.947 13 C -0.104 4.104 14 C 0.021 3.979 15 C -0.517 4.517 16 H 0.055 0.945 17 C 0.055 3.945 18 N -0.897 5.897 19 Si 0.891 3.109 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.284 1.284 23 H 0.063 0.937 24 H 0.062 0.938 25 H 0.057 0.943 26 H 0.082 0.918 27 H 0.086 0.914 28 H 0.137 0.863 29 H 0.137 0.863 30 H 0.161 0.839 31 H 0.021 0.979 32 H 0.077 0.923 33 H 0.063 0.937 34 H 0.027 0.973 35 H 0.073 0.927 36 H 0.055 0.945 37 H 0.047 0.953 38 H 0.013 0.987 39 H 0.015 0.985 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.023 0.231 -24.202 24.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.021 4.021 3 H 0.058 0.942 4 C -0.088 4.088 5 C -0.276 4.276 6 C -0.177 4.177 7 C -0.162 4.162 8 C -0.359 4.359 9 S 0.362 5.638 10 N -0.262 5.262 11 C -0.131 4.131 12 C -0.074 4.074 13 C -0.142 4.142 14 C -0.016 4.016 15 C -0.555 4.555 16 H 0.074 0.926 17 C -0.146 4.146 18 N -0.536 5.536 19 Si 0.719 3.281 20 H -0.197 1.197 21 H -0.211 1.211 22 H -0.210 1.210 23 H 0.082 0.918 24 H 0.081 0.919 25 H 0.076 0.924 26 H 0.101 0.899 27 H 0.104 0.896 28 H 0.155 0.845 29 H 0.155 0.845 30 H 0.178 0.822 31 H 0.039 0.961 32 H 0.095 0.905 33 H 0.082 0.918 34 H 0.045 0.955 35 H 0.092 0.908 36 H 0.074 0.926 37 H 0.066 0.934 38 H 0.031 0.969 39 H 0.034 0.966 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.446 -1.155 -24.026 24.058 hybrid contribution 1.685 1.486 0.741 2.366 sum 1.239 0.332 -23.284 23.320 Atomic orbital electron populations 1.21959 0.94210 1.02709 1.01864 1.21565 0.96097 0.95307 0.89179 0.94219 1.20354 1.01709 0.98107 0.88650 1.24525 0.99000 1.02107 1.01930 1.20127 1.02454 0.97536 0.97627 1.20154 0.96286 1.02006 0.97729 1.25606 1.02460 1.02373 1.05510 1.84365 1.25781 1.32606 1.21044 1.62119 1.12361 1.49958 1.01781 1.22490 0.87948 0.99681 1.02946 1.22360 1.00584 0.95320 0.89110 1.21661 1.00147 0.98764 0.93648 1.19077 0.96638 0.95371 0.90534 1.21295 1.40802 1.02228 0.91168 0.92637 1.25031 0.95343 0.95081 0.99114 1.69978 1.43793 1.17448 1.22426 0.86552 0.77962 0.80621 0.82965 1.19726 1.21073 1.21030 0.91759 0.91901 0.92377 0.89919 0.89620 0.84496 0.84528 0.82153 0.96068 0.90455 0.91793 0.95469 0.90839 0.92611 0.93443 0.96881 0.96638 0.93122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 8.90 37.16 0.33 -1.56 16 2 C 0.09 1.12 2.12 -67.71 -0.14 0.98 16 3 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 4 C -0.05 -0.53 4.86 -27.88 -0.14 -0.66 16 5 C -0.16 -1.65 4.94 -36.00 -0.18 -1.82 16 6 C -0.15 -1.46 10.05 -41.21 -0.41 -1.87 16 7 C -0.13 -1.17 10.18 -41.21 -0.42 -1.59 16 8 C -0.22 -1.94 11.23 29.04 0.33 -1.62 16 9 S 0.10 0.95 22.41 -107.50 -2.41 -1.46 16 10 N -0.54 -8.07 4.63 -234.89 -1.09 -9.15 16 11 C 0.02 0.23 8.68 60.06 0.52 0.76 16 12 C 0.05 0.94 4.81 -3.82 -0.02 0.93 16 13 C -0.10 -2.20 5.10 -26.73 -0.14 -2.34 16 14 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 15 C -0.52 -14.88 9.11 -34.44 -0.31 -15.19 16 16 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 17 C 0.05 1.60 5.46 -17.82 -0.10 1.51 16 18 N -0.90 -27.32 13.29 55.43 0.74 -26.58 16 19 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 20 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 23 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.06 0.85 6.30 -51.93 -0.33 0.52 16 25 H 0.06 0.67 6.55 -51.93 -0.34 0.33 16 26 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 27 H 0.09 0.87 6.14 -51.93 -0.32 0.55 16 28 H 0.14 1.22 8.06 -52.48 -0.42 0.79 16 29 H 0.14 0.94 8.06 -52.48 -0.42 0.52 16 30 H 0.16 1.03 8.06 -52.49 -0.42 0.61 16 31 H 0.02 0.27 8.12 -51.93 -0.42 -0.15 16 32 H 0.08 1.13 6.08 -51.93 -0.32 0.81 16 33 H 0.06 0.73 6.48 -51.93 -0.34 0.39 16 34 H 0.03 0.49 8.12 -51.93 -0.42 0.07 16 35 H 0.07 1.31 5.99 -51.93 -0.31 1.00 16 36 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 37 H 0.05 0.98 6.36 -51.93 -0.33 0.65 16 38 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 330.82 15.07 4.99 4.99 Total: -1.00 -30.45 330.82 -10.08 -40.53 By element: Atomic # 1 Polarization: 3.31 SS G_CDS: -6.47 Total: -3.16 kcal Atomic # 6 Polarization: -21.25 SS G_CDS: -0.82 Total: -22.07 kcal Atomic # 7 Polarization: -35.38 SS G_CDS: -0.35 Total: -35.74 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Atomic # 16 Polarization: 0.95 SS G_CDS: -2.41 Total: -1.46 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.45 -10.08 -40.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080834809.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.239 kcal (2) G-P(sol) polarization free energy of solvation -30.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds