Wall clock time and date at job start Mon Mar 30 2020 06:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08990 * 109.47277 * 2 1 4 4 C 1.53001 * 109.46971 * 240.00281 * 2 1 3 5 5 C 1.50703 * 109.47235 * 65.19181 * 4 2 1 6 6 C 1.33387 * 125.20149 * 84.25491 * 5 4 2 7 7 C 1.38415 * 114.92345 * 179.97438 * 6 5 4 8 8 C 1.33395 * 114.92168 * 0.24290 * 7 6 5 9 9 S 1.75883 * 125.20439 * 264.21105 * 5 4 2 10 10 N 1.46901 * 109.47482 * 120.00434 * 2 1 3 11 11 C 1.46893 * 111.00146 * 172.00330 * 10 2 1 12 12 C 1.46899 * 110.99512 * 295.96180 * 10 2 1 13 13 C 1.53001 * 109.47157 * 170.00264 * 12 10 2 14 14 C 1.53000 * 109.47392 * 179.97438 * 13 12 10 15 15 C 1.50698 * 109.47161 * 179.97438 * 14 13 12 16 16 H 1.08009 * 120.00111 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00019 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00189 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99981 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47208 * 359.97438 * 19 17 15 21 21 H 1.48507 * 109.47045 * 120.00289 * 19 17 15 22 22 H 1.48507 * 109.47169 * 239.99867 * 19 17 15 23 23 H 1.09006 * 109.47041 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47110 * 299.99420 * 1 2 3 25 25 H 1.08994 * 109.47524 * 59.99875 * 1 2 3 26 26 H 1.09002 * 109.47005 * 305.19551 * 4 2 1 27 27 H 1.08998 * 109.47485 * 185.19716 * 4 2 1 28 28 H 1.08003 * 122.53900 * 359.94158 * 6 5 4 29 29 H 1.08004 * 122.54480 * 179.97438 * 7 6 5 30 30 H 1.07997 * 125.20460 * 179.75428 * 8 7 6 31 31 H 1.09006 * 109.46805 * 53.87697 * 11 10 2 32 32 H 1.08999 * 109.46934 * 173.87143 * 11 10 2 33 33 H 1.09001 * 109.47435 * 293.87647 * 11 10 2 34 34 H 1.09002 * 109.46998 * 289.99526 * 12 10 2 35 35 H 1.08997 * 109.47556 * 49.99680 * 12 10 2 36 36 H 1.09002 * 109.46564 * 299.99528 * 13 12 10 37 37 H 1.08997 * 109.47364 * 59.99299 * 13 12 10 38 38 H 1.08997 * 109.46726 * 299.99620 * 14 13 12 39 39 H 1.09003 * 109.46671 * 60.00007 * 14 13 12 40 40 H 0.97004 * 120.00342 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6453 0.0596 -2.4764 6 6 2.3234 1.0906 -2.9827 7 6 1.7678 1.6526 -4.1191 8 6 0.6357 1.0811 -4.5328 9 16 0.2208 -0.2499 -3.4605 10 7 2.0198 -0.6926 1.1994 11 6 3.4756 -0.8796 1.1417 12 6 1.6292 0.0270 2.4190 13 6 1.9336 -0.8401 3.6423 14 6 1.5274 -0.0904 4.9127 15 6 1.8266 -0.9447 6.1175 16 1 2.2625 -1.9247 5.9899 17 6 1.5440 -0.4755 7.3827 18 7 1.0127 0.7175 7.5382 19 14 1.9156 -1.5342 8.8762 20 1 2.5057 -2.8233 8.4347 21 1 2.8771 -0.8254 9.7586 22 1 0.6587 -1.7956 9.6228 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.6026 -1.7185 -1.2971 27 1 3.1260 -0.8026 -1.2041 28 1 3.2366 1.4594 -2.5393 29 1 2.2146 2.4930 -4.6297 30 1 0.0627 1.3875 -5.3955 31 1 3.9587 0.0817 0.9662 32 1 3.8262 -1.2953 2.0864 33 1 3.7222 -1.5638 0.3298 34 1 2.1899 0.9594 2.4861 35 1 0.5620 0.2464 2.3856 36 1 1.3729 -1.7724 3.5753 37 1 3.0007 -1.0594 3.6758 38 1 2.0884 0.8418 4.9795 39 1 0.4602 0.1292 4.8794 40 1 0.8142 1.0479 8.4284 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080834809.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:02 Heat of formation + Delta-G solvation = 3.000370 kcal Electronic energy + Delta-G solvation = -17735.282877 eV Core-core repulsion = 15061.462174 eV Total energy + Delta-G solvation = -2673.820703 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.89713 -38.46364 -36.00941 -34.41023 -32.57071 -30.76245 -28.97937 -27.24157 -26.21559 -24.76020 -23.65431 -21.70960 -21.13447 -19.83929 -18.52020 -18.12180 -16.99746 -16.53203 -16.30403 -15.90108 -15.70353 -15.59621 -14.49743 -14.33893 -14.02392 -13.84382 -13.70223 -13.46916 -13.30242 -13.19438 -12.90034 -12.78309 -12.68053 -12.49082 -12.45341 -12.15373 -11.95402 -11.75971 -11.52362 -11.38508 -11.27358 -11.07104 -10.55154 -9.52024 -9.34674 -9.24961 -8.19980 -6.30953 0.10310 0.75159 1.13911 1.40029 1.40454 1.54133 1.86302 2.41095 2.92397 3.13131 3.87518 3.93671 4.01782 4.16682 4.27679 4.31319 4.37992 4.53660 4.57206 4.67748 4.71002 4.71850 4.83614 4.85321 4.87486 4.94687 5.04643 5.09897 5.16437 5.25553 5.27414 5.35931 5.42142 5.53415 5.62930 5.75055 5.86512 6.09547 6.21760 6.28320 6.86146 7.38351 8.92247 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.050179 B = 0.002947 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.868292 B = 9499.063815 C = 9612.549898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.090 3.910 3 H 0.035 0.965 4 C -0.039 4.039 5 C -0.176 4.176 6 C -0.150 4.150 7 C -0.142 4.142 8 C -0.220 4.220 9 S 0.086 5.914 10 N -0.542 5.542 11 C 0.016 3.984 12 C 0.065 3.935 13 C -0.088 4.088 14 C 0.026 3.974 15 C -0.541 4.541 16 H 0.059 0.941 17 C -0.002 4.002 18 N -0.934 5.934 19 Si 0.966 3.034 20 H -0.262 1.262 21 H -0.277 1.277 22 H -0.278 1.278 23 H 0.062 0.938 24 H 0.048 0.952 25 H 0.068 0.932 26 H 0.081 0.919 27 H 0.094 0.906 28 H 0.145 0.855 29 H 0.157 0.843 30 H 0.183 0.817 31 H 0.027 0.973 32 H 0.063 0.937 33 H 0.089 0.911 34 H 0.021 0.979 35 H 0.069 0.931 36 H 0.051 0.949 37 H 0.052 0.948 38 H -0.011 1.011 39 H -0.009 1.009 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.685 -0.448 -25.330 25.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.019 4.019 3 H 0.053 0.947 4 C -0.079 4.079 5 C -0.293 4.293 6 C -0.180 4.180 7 C -0.172 4.172 8 C -0.355 4.355 9 S 0.350 5.650 10 N -0.267 5.267 11 C -0.131 4.131 12 C -0.063 4.063 13 C -0.126 4.126 14 C -0.012 4.012 15 C -0.579 4.579 16 H 0.077 0.923 17 C -0.200 4.200 18 N -0.575 5.575 19 Si 0.790 3.210 20 H -0.186 1.186 21 H -0.203 1.203 22 H -0.203 1.203 23 H 0.081 0.919 24 H 0.067 0.933 25 H 0.087 0.913 26 H 0.100 0.900 27 H 0.112 0.888 28 H 0.163 0.837 29 H 0.175 0.825 30 H 0.201 0.799 31 H 0.046 0.954 32 H 0.082 0.918 33 H 0.107 0.893 34 H 0.039 0.961 35 H 0.088 0.912 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.007 0.993 39 H 0.009 0.991 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.223 -1.842 -25.175 25.243 hybrid contribution 1.464 1.751 1.019 2.500 sum 1.687 -0.091 -24.155 24.214 Atomic orbital electron populations 1.21926 0.94247 1.02542 1.01678 1.21591 0.96073 0.95130 0.89088 0.94742 1.20219 1.02111 0.97757 0.87768 1.24492 0.99764 1.02826 1.02264 1.20377 1.02636 0.97177 0.97835 1.20413 0.96465 1.02685 0.97621 1.25940 1.02441 1.01422 1.05697 1.84398 1.25692 1.33420 1.21525 1.62066 1.13597 1.49645 1.01370 1.22548 0.86803 1.00558 1.03226 1.22064 1.00352 0.94481 0.89367 1.21402 1.00151 0.98284 0.92802 1.18972 0.94662 0.94747 0.92802 1.21717 1.41039 1.02710 0.92403 0.92262 1.25998 0.94910 0.96437 1.02609 1.70107 1.44627 1.19267 1.23488 0.85388 0.78029 0.78976 0.78592 1.18576 1.20285 1.20324 0.91895 0.93313 0.91282 0.90010 0.88755 0.83747 0.82514 0.79950 0.95450 0.91786 0.89275 0.96103 0.91228 0.92988 0.92945 0.99273 0.99104 0.92774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.63 8.90 71.98 0.64 -2.99 16 2 C 0.09 2.22 2.12 44.92 0.10 2.32 16 3 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 4 C -0.04 -0.79 4.86 29.85 0.15 -0.64 16 5 C -0.18 -3.40 4.94 24.59 0.12 -3.27 16 6 C -0.15 -2.69 10.05 21.21 0.21 -2.47 16 7 C -0.14 -2.20 10.18 21.22 0.22 -1.99 16 8 C -0.22 -3.32 11.23 66.72 0.75 -2.57 16 9 S 0.09 1.53 22.41 -56.49 -1.27 0.27 16 10 N -0.54 -15.86 4.63 -897.07 -4.15 -20.01 16 11 C 0.02 0.42 8.68 127.69 1.11 1.53 16 12 C 0.07 2.33 4.81 86.30 0.42 2.75 16 13 C -0.09 -3.78 5.10 30.59 0.16 -3.63 16 14 C 0.03 1.40 4.97 29.85 0.15 1.55 16 15 C -0.54 -31.54 9.11 25.60 0.23 -31.31 16 16 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 17 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 18 N -0.93 -57.83 13.29 21.44 0.28 -57.55 16 19 Si 0.97 44.95 29.54 68.60 2.03 46.97 16 20 H -0.26 -11.62 7.11 99.48 0.71 -10.92 16 21 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 22 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 23 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 24 H 0.05 1.33 6.30 -2.39 -0.02 1.31 16 25 H 0.07 1.54 6.55 -2.39 -0.02 1.53 16 26 H 0.08 1.66 8.14 -2.39 -0.02 1.65 16 27 H 0.09 1.71 6.14 -2.39 -0.01 1.70 16 28 H 0.14 2.29 8.06 -2.91 -0.02 2.26 16 29 H 0.16 1.73 8.06 -2.91 -0.02 1.71 16 30 H 0.18 1.83 8.06 -2.91 -0.02 1.81 16 31 H 0.03 0.66 8.12 -2.38 -0.02 0.64 16 32 H 0.06 1.80 6.08 -2.39 -0.01 1.79 16 33 H 0.09 1.82 6.48 -2.39 -0.02 1.80 16 34 H 0.02 0.77 8.12 -2.39 -0.02 0.75 16 35 H 0.07 2.54 5.99 -2.39 -0.01 2.52 16 36 H 0.05 2.24 8.14 -2.39 -0.02 2.23 16 37 H 0.05 2.17 6.36 -2.39 -0.02 2.16 16 38 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 39 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 40 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -65.09 330.82 2.59 -62.50 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: 1.00 Total: 8.22 kcal Atomic # 6 Polarization: -45.10 SS G_CDS: 4.70 Total: -40.40 kcal Atomic # 7 Polarization: -73.69 SS G_CDS: -3.87 Total: -77.56 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.97 kcal Atomic # 16 Polarization: 1.53 SS G_CDS: -1.27 Total: 0.27 kcal Total: -65.09 2.59 -62.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080834809.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.498 kcal (2) G-P(sol) polarization free energy of solvation -65.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds