Wall clock time and date at job start Mon Mar 30 2020 06:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47044 * 2 1 4 4 C 1.53003 * 109.47203 * 120.00012 * 2 1 3 5 5 C 1.50699 * 109.46790 * 184.99897 * 4 2 1 6 6 C 1.38427 * 122.53888 * 90.00360 * 5 4 2 7 7 C 1.33387 * 114.92015 * 179.97438 * 6 5 4 8 8 S 1.75881 * 109.59499 * 359.97438 * 7 6 5 9 9 C 1.33387 * 122.54028 * 269.70654 * 5 4 2 10 10 N 1.46906 * 109.46965 * 239.99978 * 2 1 3 11 11 C 1.46893 * 111.00136 * 306.04405 * 10 2 1 12 12 C 1.46901 * 110.99853 * 70.00100 * 10 2 1 13 13 C 1.53000 * 109.46769 * 170.00087 * 12 10 2 14 14 C 1.53001 * 109.46886 * 180.02562 * 13 12 10 15 15 C 1.50697 * 109.47291 * 179.97438 * 14 13 12 16 16 H 1.08006 * 119.99920 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00428 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99563 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00432 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47116 * 59.99479 * 19 17 15 21 21 H 1.48490 * 109.47381 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.46756 * 300.00079 * 19 17 15 23 23 H 1.09002 * 109.46733 * 300.00046 * 1 2 3 24 24 H 1.09001 * 109.47141 * 59.99979 * 1 2 3 25 25 H 1.09000 * 109.47044 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46759 * 305.00169 * 4 2 1 27 27 H 1.08999 * 109.47139 * 64.99934 * 4 2 1 28 28 H 1.07998 * 122.53929 * 359.94984 * 6 5 4 29 29 H 1.08003 * 125.19980 * 180.02562 * 7 6 5 30 30 H 1.08001 * 125.20202 * 0.03044 * 9 5 4 31 31 H 1.08999 * 109.47439 * 183.95618 * 11 10 2 32 32 H 1.08997 * 109.47257 * 303.95746 * 11 10 2 33 33 H 1.09006 * 109.46808 * 63.95302 * 11 10 2 34 34 H 1.09002 * 109.47401 * 49.99794 * 12 10 2 35 35 H 1.09001 * 109.46874 * 289.99807 * 12 10 2 36 36 H 1.09001 * 109.47194 * 299.99524 * 13 12 10 37 37 H 1.08992 * 109.47399 * 59.99697 * 13 12 10 38 38 H 1.09001 * 109.47109 * 299.99380 * 14 13 12 39 39 H 1.09002 * 109.47508 * 59.99571 * 14 13 12 40 40 H 0.97000 * 119.99425 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2493 5 6 3.5420 -0.6149 1.3126 6 6 4.1882 0.4275 1.9546 7 6 5.5203 0.3705 1.9181 8 16 6.0254 -1.0637 1.0342 9 6 4.3494 -1.5210 0.7593 10 7 2.0197 -0.6925 -1.1995 11 6 1.4344 -2.0355 -1.3078 12 6 1.7529 0.0972 -2.4091 13 6 2.4885 -0.5257 -3.5973 14 6 2.2111 0.2972 -4.8570 15 6 2.9361 -0.3159 -6.0273 16 1 3.5351 -1.2036 -5.8865 17 6 2.8347 0.2562 -7.2776 18 7 2.1048 1.3367 -7.4491 19 14 3.7327 -0.5043 -8.7284 20 1 3.2564 -1.8962 -8.9310 21 1 3.4637 0.2944 -9.9510 22 1 5.1925 -0.5153 -8.4562 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.6054 -0.2617 2.1370 27 1 1.7517 -1.7715 1.2056 28 1 3.6541 1.2265 2.4474 29 1 6.1868 1.0940 2.3640 30 1 4.0238 -2.4002 0.2231 31 1 1.8665 -2.5521 -2.1648 32 1 1.6467 -2.5987 -0.3992 33 1 0.3556 -1.9520 -1.4399 34 1 2.1025 1.1189 -2.2604 35 1 0.6814 0.1053 -2.6087 36 1 3.5600 -0.5337 -3.3977 37 1 2.1389 -1.5473 -3.7459 38 1 1.1397 0.3056 -5.0569 39 1 2.5610 1.3187 -4.7081 40 1 2.0332 1.7390 -8.3288 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081598681.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:37 Heat of formation + Delta-G solvation = 19.982813 kcal Electronic energy + Delta-G solvation = -18171.151054 eV Core-core repulsion = 15498.066765 eV Total energy + Delta-G solvation = -2673.084289 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.16105 -37.31733 -34.04199 -32.32199 -30.49347 -29.59502 -27.14108 -26.90461 -25.32082 -23.25119 -22.23586 -20.05364 -19.49996 -18.54222 -17.44568 -16.35068 -15.85324 -15.23491 -14.82827 -14.40296 -14.32904 -13.64221 -13.45122 -12.99059 -12.73545 -12.71327 -12.46138 -12.19524 -12.07198 -11.69731 -11.63615 -11.36208 -11.17770 -11.06117 -10.74712 -10.67169 -10.58130 -10.48240 -10.43427 -9.53852 -9.26966 -9.01903 -8.64410 -8.29708 -8.23774 -7.90054 -5.95366 -3.97123 1.16973 1.79955 2.12605 2.83446 3.36422 3.40363 3.43282 4.20686 4.50833 4.89641 4.96109 5.08229 5.25364 5.36913 5.40357 5.42224 5.49211 5.53965 5.67325 5.70340 5.79984 5.83523 5.85883 6.00933 6.03861 6.13861 6.21742 6.28800 6.41633 6.55193 6.62970 6.78168 6.86769 7.19571 7.46786 7.49737 7.73583 7.89676 8.05593 8.49276 9.09913 9.66526 11.16128 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.019566 B = 0.004229 C = 0.003729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.679349 B = 6619.816294 C = 7506.388433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.084 3.916 3 H 0.080 0.920 4 C -0.051 4.051 5 C -0.092 4.092 6 C -0.128 4.128 7 C -0.220 4.220 8 S 0.075 5.925 9 C -0.178 4.178 10 N -0.528 5.528 11 C 0.017 3.983 12 C 0.057 3.943 13 C -0.103 4.103 14 C 0.022 3.978 15 C -0.517 4.517 16 H 0.054 0.946 17 C 0.056 3.944 18 N -0.897 5.897 19 Si 0.891 3.109 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.277 1.277 23 H 0.056 0.944 24 H 0.059 0.941 25 H 0.058 0.942 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.134 0.866 29 H 0.158 0.842 30 H 0.161 0.839 31 H 0.072 0.928 32 H 0.060 0.940 33 H 0.026 0.974 34 H 0.066 0.934 35 H 0.028 0.972 36 H 0.054 0.946 37 H 0.046 0.954 38 H 0.012 0.988 39 H 0.014 0.986 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.001 -3.976 21.123 21.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.026 4.026 3 H 0.098 0.902 4 C -0.091 4.091 5 C -0.104 4.104 6 C -0.159 4.159 7 C -0.355 4.355 8 S 0.339 5.661 9 C -0.313 4.313 10 N -0.252 5.252 11 C -0.131 4.131 12 C -0.070 4.070 13 C -0.141 4.141 14 C -0.015 4.015 15 C -0.556 4.556 16 H 0.072 0.928 17 C -0.145 4.145 18 N -0.537 5.537 19 Si 0.719 3.281 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.202 1.202 23 H 0.075 0.925 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.152 0.848 29 H 0.176 0.824 30 H 0.178 0.822 31 H 0.090 0.910 32 H 0.078 0.922 33 H 0.044 0.956 34 H 0.084 0.916 35 H 0.047 0.953 36 H 0.072 0.928 37 H 0.064 0.936 38 H 0.031 0.969 39 H 0.033 0.967 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.893 -4.529 20.640 21.329 hybrid contribution -1.763 0.466 -0.709 1.957 sum 1.129 -4.063 19.931 20.372 Atomic orbital electron populations 1.22481 0.97681 1.02196 1.02203 1.21685 0.92081 0.98380 0.90413 0.90154 1.20411 0.90194 1.01317 0.97219 1.18675 0.96549 0.94900 1.00275 1.20059 0.93523 0.99922 1.02438 1.25464 0.98976 1.03066 1.07992 1.84259 1.08549 1.20114 1.53201 1.25353 0.94314 1.05113 1.06511 1.62253 1.57915 1.02715 1.02282 1.22476 0.97278 0.91376 1.01979 1.22279 0.98149 0.97059 0.89495 1.21628 0.99295 0.99166 0.94031 1.19063 0.96693 0.95088 0.90687 1.21219 1.29466 1.11588 0.93282 0.92801 1.25021 0.95519 0.95021 0.98908 1.69961 1.40069 1.20564 1.23094 0.86672 0.80304 0.79203 0.81911 1.20292 1.21325 1.20232 0.92458 0.92152 0.92262 0.91039 0.90997 0.84820 0.82423 0.82153 0.90951 0.92169 0.95600 0.91577 0.95349 0.92753 0.93573 0.96944 0.96716 0.93038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.05 8.44 37.16 0.31 -1.74 16 2 C 0.08 1.02 2.30 -67.70 -0.16 0.86 16 3 H 0.08 1.05 7.93 -51.93 -0.41 0.64 16 4 C -0.05 -0.53 4.87 -27.88 -0.14 -0.67 16 5 C -0.09 -1.08 4.85 -106.25 -0.52 -1.60 16 6 C -0.13 -1.42 9.98 -41.21 -0.41 -1.83 16 7 C -0.22 -2.39 11.23 29.04 0.33 -2.06 16 8 S 0.08 0.88 23.34 -107.50 -2.51 -1.63 16 9 C -0.18 -2.18 10.69 29.04 0.31 -1.87 16 10 N -0.53 -7.69 4.19 -234.88 -0.98 -8.68 16 11 C 0.02 0.23 8.44 60.06 0.51 0.73 16 12 C 0.06 1.01 4.53 -3.82 -0.02 1.00 16 13 C -0.10 -2.20 5.08 -26.73 -0.14 -2.33 16 14 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 15 C -0.52 -15.00 9.11 -34.44 -0.31 -15.31 16 16 H 0.05 1.52 7.74 -52.48 -0.41 1.12 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 18 N -0.90 -27.46 13.29 55.43 0.74 -26.72 16 19 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.06 0.75 6.91 -51.93 -0.36 0.39 16 25 H 0.06 0.63 6.42 -51.93 -0.33 0.30 16 26 H 0.07 0.63 8.13 -51.93 -0.42 0.21 16 27 H 0.07 0.72 6.24 -51.93 -0.32 0.39 16 28 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 29 H 0.16 1.36 8.06 -52.48 -0.42 0.94 16 30 H 0.16 1.90 8.06 -52.49 -0.42 1.48 16 31 H 0.07 1.04 6.47 -51.93 -0.34 0.71 16 32 H 0.06 0.67 6.21 -51.93 -0.32 0.35 16 33 H 0.03 0.33 6.46 -51.93 -0.34 0.00 16 34 H 0.07 1.20 7.93 -51.93 -0.41 0.79 16 35 H 0.03 0.51 7.06 -51.93 -0.37 0.14 16 36 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.05 0.96 6.55 -51.93 -0.34 0.62 16 38 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.26 7.51 8.31 -40.82 -0.34 7.18 16 LS Contribution 330.72 15.07 4.98 4.98 Total: -1.00 -30.56 330.72 -9.72 -40.29 By element: Atomic # 1 Polarization: 4.02 SS G_CDS: -6.46 Total: -2.44 kcal Atomic # 6 Polarization: -22.37 SS G_CDS: -0.46 Total: -22.83 kcal Atomic # 7 Polarization: -35.15 SS G_CDS: -0.25 Total: -35.40 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Atomic # 16 Polarization: 0.88 SS G_CDS: -2.51 Total: -1.63 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.56 -9.72 -40.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081598681.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.268 kcal (2) G-P(sol) polarization free energy of solvation -30.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds