Wall clock time and date at job start Mon Mar 30 2020 06:30:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47044 * 2 1 4 4 C 1.53003 * 109.47203 * 120.00012 * 2 1 3 5 5 C 1.50699 * 109.46790 * 184.99897 * 4 2 1 6 6 C 1.38427 * 122.53888 * 90.00360 * 5 4 2 7 7 C 1.33387 * 114.92015 * 179.97438 * 6 5 4 8 8 S 1.75881 * 109.59499 * 359.97438 * 7 6 5 9 9 C 1.33387 * 122.54028 * 269.70654 * 5 4 2 10 10 N 1.46906 * 109.46965 * 239.99978 * 2 1 3 11 11 C 1.46893 * 111.00136 * 306.04405 * 10 2 1 12 12 C 1.46901 * 110.99853 * 70.00100 * 10 2 1 13 13 C 1.53000 * 109.46769 * 170.00087 * 12 10 2 14 14 C 1.53001 * 109.46886 * 180.02562 * 13 12 10 15 15 C 1.50697 * 109.47291 * 179.97438 * 14 13 12 16 16 H 1.08006 * 119.99920 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00428 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99563 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00432 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47116 * 59.99479 * 19 17 15 21 21 H 1.48490 * 109.47381 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.46756 * 300.00079 * 19 17 15 23 23 H 1.09002 * 109.46733 * 300.00046 * 1 2 3 24 24 H 1.09001 * 109.47141 * 59.99979 * 1 2 3 25 25 H 1.09000 * 109.47044 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46759 * 305.00169 * 4 2 1 27 27 H 1.08999 * 109.47139 * 64.99934 * 4 2 1 28 28 H 1.07998 * 122.53929 * 359.94984 * 6 5 4 29 29 H 1.08003 * 125.19980 * 180.02562 * 7 6 5 30 30 H 1.08001 * 125.20202 * 0.03044 * 9 5 4 31 31 H 1.08999 * 109.47439 * 183.95618 * 11 10 2 32 32 H 1.08997 * 109.47257 * 303.95746 * 11 10 2 33 33 H 1.09006 * 109.46808 * 63.95302 * 11 10 2 34 34 H 1.09002 * 109.47401 * 49.99794 * 12 10 2 35 35 H 1.09001 * 109.46874 * 289.99807 * 12 10 2 36 36 H 1.09001 * 109.47194 * 299.99524 * 13 12 10 37 37 H 1.08992 * 109.47399 * 59.99697 * 13 12 10 38 38 H 1.09001 * 109.47109 * 299.99380 * 14 13 12 39 39 H 1.09002 * 109.47508 * 59.99571 * 14 13 12 40 40 H 0.97000 * 119.99425 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2493 5 6 3.5420 -0.6149 1.3126 6 6 4.1882 0.4275 1.9546 7 6 5.5203 0.3705 1.9181 8 16 6.0254 -1.0637 1.0342 9 6 4.3494 -1.5210 0.7593 10 7 2.0197 -0.6925 -1.1995 11 6 1.4344 -2.0355 -1.3078 12 6 1.7529 0.0972 -2.4091 13 6 2.4885 -0.5257 -3.5973 14 6 2.2111 0.2972 -4.8570 15 6 2.9361 -0.3159 -6.0273 16 1 3.5351 -1.2036 -5.8865 17 6 2.8347 0.2562 -7.2776 18 7 2.1048 1.3367 -7.4491 19 14 3.7327 -0.5043 -8.7284 20 1 3.2564 -1.8962 -8.9310 21 1 3.4637 0.2944 -9.9510 22 1 5.1925 -0.5153 -8.4562 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.6054 -0.2617 2.1370 27 1 1.7517 -1.7715 1.2056 28 1 3.6541 1.2265 2.4474 29 1 6.1868 1.0940 2.3640 30 1 4.0238 -2.4002 0.2231 31 1 1.8665 -2.5521 -2.1648 32 1 1.6467 -2.5987 -0.3992 33 1 0.3556 -1.9520 -1.4399 34 1 2.1025 1.1189 -2.2604 35 1 0.6814 0.1053 -2.6087 36 1 3.5600 -0.5337 -3.3977 37 1 2.1389 -1.5473 -3.7459 38 1 1.1397 0.3056 -5.0569 39 1 2.5610 1.3187 -4.7081 40 1 2.0332 1.7390 -8.3288 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081598681.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:36 Heat of formation + Delta-G solvation = 3.209204 kcal Electronic energy + Delta-G solvation = -18171.878412 eV Core-core repulsion = 15498.066765 eV Total energy + Delta-G solvation = -2673.811647 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.17171 -38.34821 -35.90988 -34.03273 -31.95266 -30.53670 -28.68854 -27.81596 -26.85389 -24.55220 -23.59946 -21.71182 -20.64631 -19.40972 -18.48304 -18.31664 -17.06988 -16.46547 -16.31572 -16.07540 -15.49649 -14.85773 -14.48036 -14.26139 -14.08547 -13.80920 -13.69274 -13.49830 -13.29830 -13.04832 -12.88059 -12.60376 -12.57778 -12.45034 -12.39293 -12.13289 -12.06585 -11.61200 -11.45984 -11.36217 -11.34468 -11.04575 -10.54589 -9.51845 -9.17295 -9.03487 -8.20093 -6.31184 0.29899 0.93403 1.25880 1.39100 1.42530 1.50473 1.97093 2.40751 3.06593 3.12803 3.97328 4.11562 4.15147 4.20333 4.32543 4.45920 4.48773 4.59226 4.66015 4.69214 4.70875 4.79268 4.85096 4.89586 4.98197 5.00929 5.08822 5.15109 5.19527 5.28591 5.29726 5.36215 5.52217 5.70518 5.75288 5.77275 5.86105 6.17736 6.29357 6.35444 6.85252 7.37914 8.91723 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.019566 B = 0.004229 C = 0.003729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.679349 B = 6619.816294 C = 7506.388433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.084 3.916 3 H 0.070 0.930 4 C -0.044 4.044 5 C -0.097 4.097 6 C -0.138 4.138 7 C -0.220 4.220 8 S 0.055 5.945 9 C -0.196 4.196 10 N -0.533 5.533 11 C 0.018 3.982 12 C 0.071 3.929 13 C -0.086 4.086 14 C 0.027 3.973 15 C -0.543 4.543 16 H 0.057 0.943 17 C 0.000 4.000 18 N -0.934 5.934 19 Si 0.965 3.035 20 H -0.266 1.266 21 H -0.281 1.281 22 H -0.268 1.268 23 H 0.078 0.922 24 H 0.041 0.959 25 H 0.065 0.935 26 H 0.095 0.905 27 H 0.079 0.921 28 H 0.154 0.846 29 H 0.179 0.821 30 H 0.160 0.840 31 H 0.056 0.944 32 H 0.085 0.915 33 H 0.029 0.971 34 H 0.057 0.943 35 H 0.025 0.975 36 H 0.045 0.955 37 H 0.050 0.950 38 H -0.011 1.011 39 H -0.012 1.012 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.075 -4.688 22.232 22.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.024 4.024 3 H 0.089 0.911 4 C -0.084 4.084 5 C -0.108 4.108 6 C -0.169 4.169 7 C -0.355 4.355 8 S 0.318 5.682 9 C -0.331 4.331 10 N -0.257 5.257 11 C -0.130 4.130 12 C -0.057 4.057 13 C -0.124 4.124 14 C -0.011 4.011 15 C -0.581 4.581 16 H 0.075 0.925 17 C -0.197 4.197 18 N -0.574 5.574 19 Si 0.789 3.211 20 H -0.191 1.191 21 H -0.206 1.206 22 H -0.193 1.193 23 H 0.097 0.903 24 H 0.060 0.940 25 H 0.084 0.916 26 H 0.113 0.887 27 H 0.098 0.902 28 H 0.172 0.828 29 H 0.196 0.804 30 H 0.178 0.822 31 H 0.075 0.925 32 H 0.103 0.897 33 H 0.048 0.952 34 H 0.076 0.924 35 H 0.043 0.957 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.008 0.992 39 H 0.007 0.993 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.966 -5.252 21.772 22.592 hybrid contribution -1.795 0.724 -1.007 2.181 sum 1.172 -4.528 20.765 21.285 Atomic orbital electron populations 1.22420 0.96534 1.02673 1.02371 1.21730 0.92960 0.97875 0.89878 0.91138 1.20409 0.89322 1.01750 0.96947 1.18929 0.97298 0.94778 0.99836 1.20343 0.93751 1.00314 1.02498 1.25781 0.99454 1.02804 1.07465 1.84301 1.08893 1.21155 1.53849 1.25472 0.94569 1.05693 1.07367 1.62181 1.58687 1.03083 1.01719 1.22496 0.97256 0.90584 1.02629 1.21948 0.97185 0.96719 0.89804 1.21359 0.99168 0.98607 0.93308 1.18959 0.94796 0.94456 0.92859 1.21649 1.29940 1.11992 0.94506 0.92454 1.25979 0.96237 0.95392 1.02141 1.70096 1.41334 1.21933 1.24042 0.85512 0.79137 0.78625 0.77857 1.19093 1.20644 1.19275 0.90268 0.94018 0.91607 0.88678 0.90236 0.82819 0.80394 0.82216 0.92510 0.89655 0.95225 0.92438 0.95671 0.93594 0.93169 0.99218 0.99325 0.92763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.59 8.44 71.98 0.61 -2.99 16 2 C 0.08 1.89 2.30 44.92 0.10 1.99 16 3 H 0.07 1.74 7.93 -2.39 -0.02 1.72 16 4 C -0.04 -0.80 4.87 29.85 0.15 -0.65 16 5 C -0.10 -2.08 4.85 -20.92 -0.10 -2.18 16 6 C -0.14 -2.77 9.98 21.22 0.21 -2.56 16 7 C -0.22 -4.42 11.23 66.72 0.75 -3.68 16 8 S 0.05 1.24 23.34 -56.49 -1.32 -0.08 16 9 C -0.20 -4.60 10.69 66.72 0.71 -3.88 16 10 N -0.53 -15.02 4.19 -897.02 -3.76 -18.78 16 11 C 0.02 0.45 8.44 127.69 1.08 1.53 16 12 C 0.07 2.55 4.53 86.30 0.39 2.94 16 13 C -0.09 -3.75 5.08 30.59 0.16 -3.60 16 14 C 0.03 1.48 4.97 29.85 0.15 1.62 16 15 C -0.54 -31.99 9.11 25.60 0.23 -31.75 16 16 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 17 C 0.00 0.01 5.46 84.65 0.46 0.47 16 18 N -0.93 -58.07 13.29 21.45 0.28 -57.78 16 19 Si 0.96 45.22 29.54 68.60 2.03 47.25 16 20 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 21 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 22 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 23 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 24 H 0.04 0.98 6.91 -2.39 -0.02 0.97 16 25 H 0.06 1.22 6.42 -2.39 -0.02 1.21 16 26 H 0.09 1.31 8.13 -2.39 -0.02 1.29 16 27 H 0.08 1.33 6.24 -2.39 -0.01 1.31 16 28 H 0.15 2.39 8.06 -2.91 -0.02 2.37 16 29 H 0.18 2.71 8.06 -2.91 -0.02 2.68 16 30 H 0.16 3.65 8.06 -2.91 -0.02 3.63 16 31 H 0.06 1.59 6.47 -2.39 -0.02 1.58 16 32 H 0.08 1.70 6.21 -2.39 -0.01 1.68 16 33 H 0.03 0.72 6.46 -2.38 -0.02 0.70 16 34 H 0.06 2.13 7.93 -2.39 -0.02 2.11 16 35 H 0.03 0.91 7.06 -2.39 -0.02 0.89 16 36 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.05 2.12 6.55 -2.39 -0.02 2.10 16 38 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 39 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 40 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -66.01 330.72 3.13 -62.88 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: 1.00 Total: 9.25 kcal Atomic # 6 Polarization: -47.63 SS G_CDS: 4.90 Total: -42.73 kcal Atomic # 7 Polarization: -73.09 SS G_CDS: -3.47 Total: -76.57 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Atomic # 16 Polarization: 1.24 SS G_CDS: -1.32 Total: -0.08 kcal Total: -66.01 3.13 -62.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081598681.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.087 kcal (2) G-P(sol) polarization free energy of solvation -66.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds