Wall clock time and date at job start Mon Mar 30 2020 06:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 5 5 C 1.50699 * 109.47053 * 175.00035 * 4 2 1 6 6 C 1.38423 * 122.54116 * 89.99793 * 5 4 2 7 7 C 1.33387 * 114.92100 * 179.97438 * 6 5 4 8 8 S 1.75890 * 109.59541 * 0.02562 * 7 6 5 9 9 C 1.33395 * 122.53730 * 269.70633 * 5 4 2 10 10 N 1.46894 * 109.47515 * 120.00133 * 2 1 3 11 11 C 1.46902 * 110.99790 * 58.95192 * 10 2 1 12 12 C 1.46896 * 111.00342 * 295.00322 * 10 2 1 13 13 C 1.52998 * 109.47586 * 189.99608 * 12 10 2 14 14 C 1.53002 * 109.47222 * 179.97438 * 13 12 10 15 15 C 1.50698 * 109.47192 * 179.97438 * 14 13 12 16 16 H 1.08010 * 119.99849 * 0.02562 * 15 14 13 17 17 C 1.37879 * 120.00269 * 179.97438 * 15 14 13 18 18 N 1.31512 * 119.99647 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 119.99904 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47463 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47077 * 120.00888 * 19 17 15 22 22 H 1.48506 * 109.46918 * 240.00393 * 19 17 15 23 23 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 24 24 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 26 26 H 1.08995 * 109.46750 * 294.99553 * 4 2 1 27 27 H 1.09001 * 109.47326 * 54.99931 * 4 2 1 28 28 H 1.07999 * 122.53757 * 359.95518 * 6 5 4 29 29 H 1.08004 * 125.20426 * 179.97438 * 7 6 5 30 30 H 1.07994 * 125.20044 * 0.02784 * 9 5 4 31 31 H 1.09003 * 109.46808 * 60.00632 * 11 10 2 32 32 H 1.09004 * 109.47176 * 180.02562 * 11 10 2 33 33 H 1.08994 * 109.47263 * 300.00333 * 11 10 2 34 34 H 1.09006 * 109.46837 * 310.00141 * 12 10 2 35 35 H 1.09003 * 109.47200 * 69.99229 * 12 10 2 36 36 H 1.08995 * 109.46976 * 300.00097 * 13 12 10 37 37 H 1.09009 * 109.46864 * 59.99934 * 13 12 10 38 38 H 1.09004 * 109.47344 * 300.00037 * 14 13 12 39 39 H 1.09003 * 109.47111 * 59.99899 * 14 13 12 40 40 H 0.96997 * 119.99802 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 3.5419 -0.6148 -1.3128 6 6 4.3798 -1.5521 -0.7336 7 6 5.6829 -1.3090 -0.8823 8 16 5.9053 0.1763 -1.7977 9 6 4.1645 0.3867 -1.9363 10 7 2.0197 -0.6925 1.1993 11 6 1.5283 -2.0761 1.2458 12 6 1.6488 0.0390 2.4180 13 6 2.3789 -0.5664 3.6185 14 6 1.9930 0.1960 4.8877 15 6 2.7117 -0.4008 6.0702 16 1 3.3776 -1.2396 5.9305 17 6 2.5202 0.1248 7.3305 18 7 1.7098 1.1465 7.5006 19 14 3.4116 -0.6145 8.7961 20 1 4.2587 -1.7461 8.3410 21 1 4.2676 0.4210 9.4286 22 1 2.4174 -1.1058 9.7838 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 -0.8900 26 1 1.7517 -1.7714 -1.2057 27 1 1.6054 -0.2616 -2.1371 28 1 4.0068 -2.4146 -0.2014 29 1 6.4797 -1.9290 -0.4985 30 1 3.6747 1.2031 -2.4459 31 1 1.8763 -2.6150 0.3646 32 1 1.9054 -2.5656 2.1438 33 1 0.4386 -2.0742 1.2638 34 1 1.9297 1.0869 2.3125 35 1 0.5723 -0.0346 2.5725 36 1 2.0979 -1.6142 3.7240 37 1 3.4555 -0.4927 3.4640 38 1 2.2744 1.2437 4.7820 39 1 0.9165 0.1227 5.0424 40 1 1.5747 1.5160 8.3872 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081598683.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:39 Heat of formation + Delta-G solvation = 20.832435 kcal Electronic energy + Delta-G solvation = -18184.980294 eV Core-core repulsion = 15511.932847 eV Total energy + Delta-G solvation = -2673.047446 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.21924 -37.28783 -34.04062 -32.35158 -30.61882 -29.39366 -27.52800 -26.65479 -25.34034 -23.15853 -22.31667 -20.06722 -19.44512 -18.55014 -17.56100 -16.30431 -15.85040 -15.36943 -14.66899 -14.40971 -14.39754 -13.55128 -13.48364 -13.09142 -12.91719 -12.63982 -12.40632 -12.22137 -12.08558 -11.70515 -11.58239 -11.36644 -11.19195 -11.06021 -10.76904 -10.70617 -10.60069 -10.46599 -10.40522 -9.54074 -9.28045 -9.00252 -8.68381 -8.30853 -8.24033 -7.90134 -5.96182 -3.97765 1.12452 1.77115 2.08335 2.86766 3.33364 3.40671 3.45301 4.20929 4.50402 4.82227 5.03130 5.03986 5.24299 5.30473 5.39778 5.41953 5.48720 5.55124 5.64680 5.73031 5.77694 5.83547 5.84351 6.00159 6.05164 6.15668 6.21781 6.31992 6.41748 6.52844 6.62196 6.77968 6.86256 7.19210 7.46483 7.49316 7.73592 7.89152 8.05007 8.48782 9.09768 9.66048 11.15407 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.020464 B = 0.004071 C = 0.003640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.909639 B = 6876.778090 C = 7690.663204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.085 3.915 3 H 0.080 0.920 4 C -0.056 4.056 5 C -0.074 4.074 6 C -0.105 4.105 7 C -0.214 4.214 8 S 0.067 5.933 9 C -0.221 4.221 10 N -0.528 5.528 11 C 0.015 3.985 12 C 0.056 3.944 13 C -0.103 4.103 14 C 0.021 3.979 15 C -0.516 4.516 16 H 0.055 0.945 17 C 0.055 3.945 18 N -0.897 5.897 19 Si 0.890 3.110 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.285 1.285 23 H 0.061 0.939 24 H 0.058 0.942 25 H 0.056 0.944 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.139 0.861 29 H 0.160 0.840 30 H 0.158 0.842 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.025 0.975 34 H 0.066 0.934 35 H 0.029 0.971 36 H 0.046 0.954 37 H 0.054 0.946 38 H 0.015 0.985 39 H 0.012 0.988 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.905 -3.865 -21.175 21.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.025 4.025 3 H 0.099 0.901 4 C -0.096 4.096 5 C -0.086 4.086 6 C -0.135 4.135 7 C -0.349 4.349 8 S 0.330 5.670 9 C -0.356 4.356 10 N -0.251 5.251 11 C -0.133 4.133 12 C -0.071 4.071 13 C -0.141 4.141 14 C -0.016 4.016 15 C -0.554 4.554 16 H 0.073 0.927 17 C -0.145 4.145 18 N -0.537 5.537 19 Si 0.718 3.282 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.211 1.211 23 H 0.080 0.920 24 H 0.077 0.923 25 H 0.075 0.925 26 H 0.093 0.907 27 H 0.090 0.910 28 H 0.156 0.844 29 H 0.177 0.823 30 H 0.175 0.825 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.043 0.957 34 H 0.084 0.916 35 H 0.047 0.953 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.033 0.967 39 H 0.031 0.969 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.655 -2.946 -21.570 22.075 hybrid contribution -1.660 -0.987 1.566 2.487 sum 1.995 -3.934 -20.004 20.484 Atomic orbital electron populations 1.22488 0.97710 1.02220 1.02291 1.21706 0.92123 0.98392 0.90235 0.90138 1.20478 0.90198 1.01569 0.97358 1.18750 0.96667 0.94828 0.98387 1.20039 0.91891 1.00992 1.00572 1.25510 1.00466 1.01262 1.07651 1.84134 1.05906 1.22656 1.54310 1.25326 0.95958 1.04516 1.09809 1.62274 1.58895 1.02077 1.01858 1.22513 0.97724 0.90693 1.02379 1.22278 0.97673 0.97744 0.89365 1.21634 0.99406 0.99176 0.93900 1.19078 0.96518 0.95402 0.90626 1.21296 1.26216 1.15650 0.92245 0.92687 1.25026 0.95425 0.95076 0.99005 1.69977 1.37031 1.24181 1.22480 0.86560 0.79619 0.79181 0.82795 1.19736 1.21037 1.21076 0.91991 0.92283 0.92458 0.90703 0.90993 0.84357 0.82266 0.82475 0.92000 0.90842 0.95660 0.91584 0.95278 0.93538 0.92751 0.96701 0.96926 0.93148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.08 8.50 37.16 0.32 -1.76 16 2 C 0.08 1.02 2.33 -67.71 -0.16 0.87 16 3 H 0.08 1.05 8.03 -51.93 -0.42 0.63 16 4 C -0.06 -0.58 4.76 -27.88 -0.13 -0.71 16 5 C -0.07 -0.86 4.84 -106.25 -0.51 -1.37 16 6 C -0.10 -1.26 9.73 -41.21 -0.40 -1.66 16 7 C -0.21 -2.47 11.23 29.04 0.33 -2.14 16 8 S 0.07 0.74 23.34 -107.50 -2.51 -1.77 16 9 C -0.22 -2.45 10.98 29.04 0.32 -2.13 16 10 N -0.53 -7.66 4.25 -234.89 -1.00 -8.66 16 11 C 0.02 0.20 8.62 60.07 0.52 0.71 16 12 C 0.06 0.99 4.40 -3.83 -0.02 0.98 16 13 C -0.10 -2.19 5.08 -26.73 -0.14 -2.32 16 14 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 15 C -0.52 -14.92 9.11 -34.44 -0.31 -15.23 16 16 H 0.05 1.56 7.74 -52.48 -0.41 1.15 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.90 -27.40 13.29 55.43 0.74 -26.67 16 19 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 20 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 21 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 23 H 0.06 0.77 6.75 -51.93 -0.35 0.42 16 24 H 0.06 0.63 6.39 -51.93 -0.33 0.30 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.07 0.73 6.16 -51.93 -0.32 0.41 16 27 H 0.07 0.63 8.12 -51.93 -0.42 0.21 16 28 H 0.14 1.61 7.35 -52.49 -0.39 1.22 16 29 H 0.16 1.55 8.06 -52.48 -0.42 1.13 16 30 H 0.16 1.45 8.06 -52.49 -0.42 1.02 16 31 H 0.06 0.69 5.52 -51.93 -0.29 0.40 16 32 H 0.07 1.06 6.30 -51.93 -0.33 0.73 16 33 H 0.02 0.32 6.28 -51.93 -0.33 -0.01 16 34 H 0.07 1.19 8.00 -51.93 -0.42 0.78 16 35 H 0.03 0.52 6.94 -51.93 -0.36 0.15 16 36 H 0.05 0.97 6.47 -51.93 -0.34 0.63 16 37 H 0.05 1.19 8.14 -51.92 -0.42 0.77 16 38 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 40 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 328.79 15.07 4.95 4.95 Total: -1.00 -30.56 328.79 -9.62 -40.18 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: -6.36 Total: -2.20 kcal Atomic # 6 Polarization: -22.40 SS G_CDS: -0.43 Total: -22.83 kcal Atomic # 7 Polarization: -35.06 SS G_CDS: -0.26 Total: -35.32 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Atomic # 16 Polarization: 0.74 SS G_CDS: -2.51 Total: -1.77 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.56 -9.62 -40.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081598683.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.014 kcal (2) G-P(sol) polarization free energy of solvation -30.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds