Wall clock time and date at job start Mon Mar 30 2020 06:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 5 5 C 1.50699 * 109.47053 * 175.00035 * 4 2 1 6 6 C 1.38423 * 122.54116 * 89.99793 * 5 4 2 7 7 C 1.33387 * 114.92100 * 179.97438 * 6 5 4 8 8 S 1.75890 * 109.59541 * 0.02562 * 7 6 5 9 9 C 1.33395 * 122.53730 * 269.70633 * 5 4 2 10 10 N 1.46894 * 109.47515 * 120.00133 * 2 1 3 11 11 C 1.46902 * 110.99790 * 58.95192 * 10 2 1 12 12 C 1.46896 * 111.00342 * 295.00322 * 10 2 1 13 13 C 1.52998 * 109.47586 * 189.99608 * 12 10 2 14 14 C 1.53002 * 109.47222 * 179.97438 * 13 12 10 15 15 C 1.50698 * 109.47192 * 179.97438 * 14 13 12 16 16 H 1.08010 * 119.99849 * 0.02562 * 15 14 13 17 17 C 1.37879 * 120.00269 * 179.97438 * 15 14 13 18 18 N 1.31512 * 119.99647 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 119.99904 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47463 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47077 * 120.00888 * 19 17 15 22 22 H 1.48506 * 109.46918 * 240.00393 * 19 17 15 23 23 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 24 24 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 26 26 H 1.08995 * 109.46750 * 294.99553 * 4 2 1 27 27 H 1.09001 * 109.47326 * 54.99931 * 4 2 1 28 28 H 1.07999 * 122.53757 * 359.95518 * 6 5 4 29 29 H 1.08004 * 125.20426 * 179.97438 * 7 6 5 30 30 H 1.07994 * 125.20044 * 0.02784 * 9 5 4 31 31 H 1.09003 * 109.46808 * 60.00632 * 11 10 2 32 32 H 1.09004 * 109.47176 * 180.02562 * 11 10 2 33 33 H 1.08994 * 109.47263 * 300.00333 * 11 10 2 34 34 H 1.09006 * 109.46837 * 310.00141 * 12 10 2 35 35 H 1.09003 * 109.47200 * 69.99229 * 12 10 2 36 36 H 1.08995 * 109.46976 * 300.00097 * 13 12 10 37 37 H 1.09009 * 109.46864 * 59.99934 * 13 12 10 38 38 H 1.09004 * 109.47344 * 300.00037 * 14 13 12 39 39 H 1.09003 * 109.47111 * 59.99899 * 14 13 12 40 40 H 0.96997 * 119.99802 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 3.5419 -0.6148 -1.3128 6 6 4.3798 -1.5521 -0.7336 7 6 5.6829 -1.3090 -0.8823 8 16 5.9053 0.1763 -1.7977 9 6 4.1645 0.3867 -1.9363 10 7 2.0197 -0.6925 1.1993 11 6 1.5283 -2.0761 1.2458 12 6 1.6488 0.0390 2.4180 13 6 2.3789 -0.5664 3.6185 14 6 1.9930 0.1960 4.8877 15 6 2.7117 -0.4008 6.0702 16 1 3.3776 -1.2396 5.9305 17 6 2.5202 0.1248 7.3305 18 7 1.7098 1.1465 7.5006 19 14 3.4116 -0.6145 8.7961 20 1 4.2587 -1.7461 8.3410 21 1 4.2676 0.4210 9.4286 22 1 2.4174 -1.1058 9.7838 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 -0.8900 26 1 1.7517 -1.7714 -1.2057 27 1 1.6054 -0.2616 -2.1371 28 1 4.0068 -2.4146 -0.2014 29 1 6.4797 -1.9290 -0.4985 30 1 3.6747 1.2031 -2.4459 31 1 1.8763 -2.6150 0.3646 32 1 1.9054 -2.5656 2.1438 33 1 0.4386 -2.0742 1.2638 34 1 1.9297 1.0869 2.3125 35 1 0.5723 -0.0346 2.5725 36 1 2.0979 -1.6142 3.7240 37 1 3.4555 -0.4927 3.4640 38 1 2.2744 1.2437 4.7820 39 1 0.9165 0.1227 5.0424 40 1 1.5747 1.5160 8.3872 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081598683.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:39 Heat of formation + Delta-G solvation = 3.992688 kcal Electronic energy + Delta-G solvation = -18185.710520 eV Core-core repulsion = 15511.932847 eV Total energy + Delta-G solvation = -2673.777673 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.21961 -38.32273 -35.90028 -34.03572 -32.05995 -30.36857 -28.86211 -27.77675 -26.83691 -24.48437 -23.64878 -21.73082 -20.58697 -19.41325 -18.52461 -18.35531 -17.03971 -16.49432 -16.35324 -15.99344 -15.56496 -14.69626 -14.48003 -14.32879 -14.23639 -13.79361 -13.63130 -13.58514 -13.26107 -13.05583 -12.90259 -12.61132 -12.54581 -12.42692 -12.40576 -12.09844 -12.05145 -11.63905 -11.45549 -11.34551 -11.33533 -11.03671 -10.55422 -9.55578 -9.12291 -9.04253 -8.20287 -6.31133 0.26180 0.92539 1.22793 1.39234 1.39756 1.53332 1.98651 2.40727 3.07554 3.12831 3.93791 4.12651 4.15033 4.22273 4.31968 4.41852 4.48661 4.58410 4.64904 4.70290 4.71374 4.76133 4.86307 4.91290 4.98204 4.99924 5.10019 5.14517 5.20006 5.27256 5.30907 5.40648 5.53173 5.67973 5.75789 5.76292 5.86600 6.18079 6.29787 6.35686 6.85827 7.38092 8.91964 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.020464 B = 0.004071 C = 0.003640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.909639 B = 6876.778090 C = 7690.663204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.085 3.915 3 H 0.070 0.930 4 C -0.048 4.048 5 C -0.086 4.086 6 C -0.118 4.118 7 C -0.226 4.226 8 S 0.067 5.933 9 C -0.226 4.226 10 N -0.533 5.533 11 C 0.016 3.984 12 C 0.070 3.930 13 C -0.086 4.086 14 C 0.026 3.974 15 C -0.540 4.540 16 H 0.058 0.942 17 C -0.001 4.001 18 N -0.934 5.934 19 Si 0.965 3.035 20 H -0.262 1.262 21 H -0.278 1.278 22 H -0.276 1.276 23 H 0.042 0.958 24 H 0.064 0.936 25 H 0.078 0.922 26 H 0.083 0.917 27 H 0.094 0.906 28 H 0.140 0.860 29 H 0.171 0.829 30 H 0.175 0.825 31 H 0.086 0.914 32 H 0.057 0.943 33 H 0.030 0.970 34 H 0.057 0.943 35 H 0.026 0.974 36 H 0.051 0.949 37 H 0.046 0.954 38 H -0.012 1.012 39 H -0.010 1.010 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.153 -4.826 -22.127 22.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.024 4.024 3 H 0.088 0.912 4 C -0.088 4.088 5 C -0.099 4.099 6 C -0.149 4.149 7 C -0.361 4.361 8 S 0.330 5.670 9 C -0.361 4.361 10 N -0.256 5.256 11 C -0.132 4.132 12 C -0.057 4.057 13 C -0.124 4.124 14 C -0.012 4.012 15 C -0.578 4.578 16 H 0.076 0.924 17 C -0.198 4.198 18 N -0.575 5.575 19 Si 0.789 3.211 20 H -0.186 1.186 21 H -0.203 1.203 22 H -0.202 1.202 23 H 0.061 0.939 24 H 0.083 0.917 25 H 0.097 0.903 26 H 0.101 0.899 27 H 0.112 0.888 28 H 0.158 0.842 29 H 0.189 0.811 30 H 0.193 0.807 31 H 0.105 0.895 32 H 0.076 0.924 33 H 0.049 0.951 34 H 0.075 0.925 35 H 0.044 0.956 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.007 0.993 39 H 0.008 0.992 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.904 -3.916 -22.544 23.212 hybrid contribution -1.732 -0.657 1.821 2.598 sum 2.171 -4.573 -20.723 21.333 Atomic orbital electron populations 1.22428 0.96678 1.02641 1.02416 1.21748 0.92912 0.97889 0.89803 0.91172 1.20456 0.89360 1.01992 0.96970 1.18927 0.97399 0.94923 0.98622 1.20210 0.92274 1.01408 1.00969 1.25772 1.00897 1.01667 1.07764 1.84121 1.06304 1.22467 1.54124 1.25624 0.95916 1.04871 1.09639 1.62200 1.59455 1.02639 1.01314 1.22537 0.98047 0.89786 1.02804 1.21947 0.96807 0.97293 0.89697 1.21366 0.99128 0.98800 0.93151 1.18975 0.94809 0.94510 0.92884 1.21708 1.26644 1.16004 0.93479 0.92419 1.25982 0.96140 0.95391 1.02318 1.70105 1.38341 1.25489 1.23522 0.85402 0.78465 0.78585 0.78621 1.18641 1.20341 1.20198 0.93910 0.91678 0.90302 0.89881 0.88773 0.84215 0.81105 0.80721 0.89542 0.92428 0.95125 0.92491 0.95580 0.93075 0.93566 0.99326 0.99194 0.92783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.67 8.50 71.98 0.61 -3.06 16 2 C 0.09 1.91 2.33 44.92 0.10 2.02 16 3 H 0.07 1.73 8.03 -2.39 -0.02 1.71 16 4 C -0.05 -0.85 4.76 29.85 0.14 -0.71 16 5 C -0.09 -1.83 4.84 -20.92 -0.10 -1.94 16 6 C -0.12 -2.69 9.73 21.22 0.21 -2.48 16 7 C -0.23 -4.97 11.23 66.72 0.75 -4.22 16 8 S 0.07 1.39 23.34 -56.49 -1.32 0.08 16 9 C -0.23 -4.59 10.98 66.72 0.73 -3.86 16 10 N -0.53 -14.92 4.25 -897.05 -3.82 -18.73 16 11 C 0.02 0.39 8.62 127.69 1.10 1.49 16 12 C 0.07 2.50 4.40 86.30 0.38 2.88 16 13 C -0.09 -3.73 5.08 30.59 0.16 -3.57 16 14 C 0.03 1.41 4.97 29.85 0.15 1.56 16 15 C -0.54 -31.72 9.11 25.60 0.23 -31.49 16 16 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 17 C 0.00 -0.05 5.46 84.66 0.46 0.41 16 18 N -0.93 -57.96 13.29 21.45 0.28 -57.68 16 19 Si 0.96 45.14 29.54 68.60 2.03 47.17 16 20 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 21 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 22 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 23 H 0.04 1.02 6.75 -2.39 -0.02 1.01 16 24 H 0.06 1.23 6.39 -2.39 -0.02 1.22 16 25 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 26 H 0.08 1.36 6.16 -2.39 -0.01 1.35 16 27 H 0.09 1.30 8.12 -2.39 -0.02 1.28 16 28 H 0.14 3.04 7.35 -2.91 -0.02 3.02 16 29 H 0.17 3.17 8.06 -2.91 -0.02 3.15 16 30 H 0.18 2.80 8.06 -2.91 -0.02 2.78 16 31 H 0.09 1.70 5.52 -2.39 -0.01 1.69 16 32 H 0.06 1.60 6.30 -2.38 -0.02 1.59 16 33 H 0.03 0.72 6.28 -2.39 -0.02 0.71 16 34 H 0.06 2.10 8.00 -2.38 -0.02 2.08 16 35 H 0.03 0.94 6.94 -2.39 -0.02 0.92 16 36 H 0.05 2.14 6.47 -2.39 -0.02 2.12 16 37 H 0.05 2.04 8.14 -2.38 -0.02 2.03 16 38 H -0.01 -0.69 8.14 -2.38 -0.02 -0.71 16 39 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 40 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -65.72 328.79 3.10 -62.62 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: 1.00 Total: 9.51 kcal Atomic # 6 Polarization: -47.89 SS G_CDS: 4.92 Total: -42.96 kcal Atomic # 7 Polarization: -72.88 SS G_CDS: -3.53 Total: -76.41 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Atomic # 16 Polarization: 1.39 SS G_CDS: -1.32 Total: 0.08 kcal Total: -65.72 3.10 -62.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081598683.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.610 kcal (2) G-P(sol) polarization free energy of solvation -65.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds