Wall clock time and date at job start Mon Mar 30 2020 07:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86804 * 120.00100 * 2 1 4 4 H 1.48495 * 109.47172 * 84.36311 * 3 2 1 5 5 H 1.48501 * 109.46890 * 204.36069 * 3 2 1 6 6 H 1.48498 * 109.46858 * 324.35939 * 3 2 1 7 7 C 1.38809 * 120.00040 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99996 * 21.20934 * 7 2 1 9 9 N 1.36937 * 120.00463 * 201.21196 * 7 2 1 10 10 C 1.46501 * 119.99694 * 39.92814 * 9 7 2 11 11 C 1.52996 * 109.46865 * 90.00712 * 10 9 7 12 12 C 1.53004 * 109.47179 * 179.97438 * 11 10 9 13 13 C 1.52996 * 109.47179 * 179.97438 * 12 11 10 14 14 H 1.08994 * 110.27970 * 54.29508 * 13 12 11 15 15 C 1.54949 * 110.30731 * 176.39013 * 13 12 11 16 16 C 1.55415 * 100.89109 * 155.28379 * 15 13 12 17 17 C 1.54384 * 102.31339 * 325.99166 * 16 15 13 18 18 O 1.43240 * 107.58407 * 21.28298 * 17 16 15 19 19 C 1.46502 * 119.99756 * 219.93151 * 9 7 2 20 20 C 1.54266 * 110.03245 * 62.78073 * 19 9 7 21 21 C 1.54895 * 104.19369 * 217.10078 * 20 19 9 22 22 C 1.54889 * 102.74765 * 37.94154 * 21 20 19 23 23 C 1.53873 * 110.03586 * 305.60698 * 19 9 7 24 24 H 0.96998 * 120.00000 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.46527 * 209.99765 * 10 9 7 26 26 H 1.08994 * 109.47056 * 330.00111 * 10 9 7 27 27 H 1.09004 * 109.47199 * 299.99754 * 11 10 9 28 28 H 1.08999 * 109.47473 * 59.99465 * 11 10 9 29 29 H 1.08997 * 109.47027 * 299.99631 * 12 11 10 30 30 H 1.08999 * 109.47245 * 59.99460 * 12 11 10 31 31 H 1.08991 * 111.12202 * 273.27196 * 15 13 12 32 32 H 1.09002 * 111.12696 * 37.44275 * 15 13 12 33 33 H 1.08999 * 110.88627 * 207.74798 * 16 15 13 34 34 H 1.09003 * 110.93597 * 84.25193 * 16 15 13 35 35 H 1.08999 * 109.82742 * 261.77461 * 17 16 15 36 36 H 1.08991 * 109.90745 * 140.84176 * 17 16 15 37 37 H 1.09004 * 110.01275 * 184.21521 * 19 9 7 38 38 H 1.09004 * 110.48662 * 335.78232 * 20 19 9 39 39 H 1.09000 * 110.49029 * 98.42145 * 20 19 9 40 40 H 1.08997 * 110.75599 * 279.62356 * 21 20 19 41 41 H 1.09006 * 110.75132 * 156.25704 * 21 20 19 42 42 H 1.08992 * 110.48383 * 203.37928 * 22 21 20 43 43 H 1.09003 * 110.48578 * 80.73438 * 22 21 20 44 44 H 1.08993 * 110.03501 * 238.57014 * 23 19 9 45 45 H 1.09000 * 110.03033 * 0.02562 * 23 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3786 2.1152 1.3932 5 1 3.6022 1.4086 -0.5775 6 1 1.5123 2.6153 -0.8158 7 6 2.0102 -1.2021 0.0005 8 1 1.5251 -2.1059 -0.3374 9 7 3.3100 -1.2422 0.4296 10 6 3.7216 -0.4541 1.5940 11 6 3.5455 -1.2897 2.8634 12 6 3.9759 -0.4668 4.0794 13 6 3.7992 -1.3022 5.3490 14 1 4.3283 -2.2504 5.2539 15 6 4.3145 -0.5202 6.5834 16 6 3.4899 -1.1877 7.7191 17 6 2.1533 -1.5032 7.0138 18 8 2.4045 -1.5329 5.6039 19 6 4.2889 -2.0732 -0.2758 20 6 4.4566 -1.5758 -1.7264 21 6 4.6383 -2.8726 -2.5538 22 6 3.6609 -3.8572 -1.8652 23 6 3.7830 -3.5237 -0.3640 24 1 -0.4850 0.8400 0.0004 25 1 4.7686 -0.1698 1.4885 26 1 3.1064 0.4432 1.6612 27 1 2.4985 -1.5741 2.9689 28 1 4.1607 -2.1870 2.7961 29 1 5.0229 -0.1828 3.9738 30 1 3.3611 0.4306 4.1470 31 1 5.3835 -0.6755 6.7286 32 1 4.0812 0.5414 6.5014 33 1 3.3376 -0.4955 8.5472 34 1 3.9717 -2.1025 8.0642 35 1 1.4224 -0.7277 7.2428 36 1 1.7795 -2.4725 7.3433 37 1 5.2470 -2.0427 0.2432 38 1 3.5657 -1.0380 -2.0507 39 1 5.3388 -0.9415 -1.8127 40 1 5.6641 -3.2346 -2.4844 41 1 4.3544 -2.7102 -3.5937 42 1 3.9624 -4.8877 -2.0527 43 1 2.6415 -3.6878 -2.2119 44 1 4.4959 -4.1973 0.1114 45 1 2.8090 -3.6093 0.1177 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087248393.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:05 Heat of formation + Delta-G solvation = -47.703916 kcal Electronic energy + Delta-G solvation = -21452.660800 eV Core-core repulsion = 18469.721618 eV Total energy + Delta-G solvation = -2982.939182 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.33182 -37.87387 -35.10588 -32.96797 -32.02764 -31.23174 -28.85024 -27.87952 -26.78518 -25.16885 -22.81324 -21.76784 -21.03323 -20.37844 -19.87510 -18.90361 -16.79677 -16.38958 -15.67479 -15.40196 -15.14318 -14.70353 -14.29315 -13.88887 -13.36725 -13.28051 -12.96024 -12.80611 -12.54575 -12.29786 -11.99336 -11.71641 -11.55906 -11.26658 -11.00625 -10.91518 -10.74923 -10.63612 -10.51348 -10.40928 -10.32169 -10.24269 -9.96444 -9.90478 -9.76197 -9.46398 -9.33146 -9.29440 -8.37404 -6.61649 -5.88167 -3.30587 3.38512 3.52813 3.59053 3.95194 4.48028 4.62247 4.71816 4.87265 5.05600 5.20571 5.25934 5.33568 5.43949 5.49016 5.54515 5.57298 5.65908 5.68871 5.74312 5.78110 5.86312 6.02996 6.10301 6.15483 6.25413 6.27554 6.29905 6.35997 6.41725 6.50472 6.55212 6.57237 6.60391 6.67960 6.81072 6.99259 7.02279 7.19741 7.26000 7.27187 7.31465 8.20829 8.54860 9.14763 9.84785 10.27622 11.27616 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.017504 B = 0.005667 C = 0.004887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.208934 B = 4939.528059 C = 5728.081451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.037 3.963 3 Si 0.874 3.126 4 H -0.288 1.288 5 H -0.268 1.268 6 H -0.305 1.305 7 C -0.254 4.254 8 H 0.079 0.921 9 N -0.601 5.601 10 C 0.139 3.861 11 C -0.128 4.128 12 C -0.119 4.119 13 C 0.084 3.916 14 H 0.067 0.933 15 C -0.154 4.154 16 C -0.156 4.156 17 C 0.049 3.951 18 O -0.370 6.370 19 C 0.174 3.826 20 C -0.137 4.137 21 C -0.122 4.122 22 C -0.117 4.117 23 C -0.132 4.132 24 H 0.261 0.739 25 H 0.032 0.968 26 H 0.051 0.949 27 H 0.075 0.925 28 H 0.049 0.951 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.049 0.951 38 H 0.082 0.918 39 H 0.044 0.956 40 H 0.053 0.947 41 H 0.054 0.946 42 H 0.048 0.952 43 H 0.065 0.935 44 H 0.043 0.957 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.598 -3.131 9.667 14.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.163 4.163 3 Si 0.705 3.295 4 H -0.216 1.216 5 H -0.193 1.193 6 H -0.233 1.233 7 C -0.383 4.383 8 H 0.096 0.904 9 N -0.322 5.322 10 C 0.013 3.987 11 C -0.168 4.168 12 C -0.157 4.157 13 C 0.026 3.974 14 H 0.085 0.915 15 C -0.191 4.191 16 C -0.194 4.194 17 C -0.028 4.028 18 O -0.289 6.289 19 C 0.067 3.933 20 C -0.176 4.176 21 C -0.160 4.160 22 C -0.155 4.155 23 C -0.171 4.171 24 H 0.071 0.929 25 H 0.051 0.949 26 H 0.069 0.931 27 H 0.094 0.906 28 H 0.067 0.933 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.092 0.908 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.068 0.932 38 H 0.100 0.900 39 H 0.063 0.937 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.066 0.934 43 H 0.083 0.917 44 H 0.062 0.938 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 10.279 -3.065 9.496 14.326 hybrid contribution 0.520 1.069 0.288 1.223 sum 10.799 -1.996 9.785 14.709 Atomic orbital electron populations 1.69861 1.05984 1.26447 1.52098 1.25504 0.94989 0.97587 0.98228 0.86945 0.80755 0.85034 0.76811 1.21565 1.19326 1.23297 1.18620 0.85587 0.93897 1.40216 0.90382 1.44272 1.06986 1.52955 1.28002 1.21180 0.96602 0.94201 0.86675 1.22072 1.02718 0.98256 0.93785 1.21751 1.00961 0.99089 0.93875 1.23034 0.82175 0.97471 0.94690 0.91505 1.23359 1.00384 1.00791 0.94598 1.23127 0.96336 1.01222 0.98708 1.23077 0.96743 1.00977 0.81981 1.88548 1.25329 1.93266 1.21806 1.21024 0.91020 0.90116 0.91158 1.22859 1.01323 0.96372 0.97053 1.22410 0.98295 0.96786 0.98480 1.22249 0.99660 0.97264 0.96334 1.22534 1.01910 0.97205 0.95487 0.92931 0.94937 0.93116 0.90617 0.93265 0.91499 0.91562 0.90195 0.90333 0.90409 0.90813 0.91638 0.91801 0.93227 0.89973 0.93713 0.92807 0.92747 0.93358 0.91654 0.93791 0.90429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.88 13.97 55.49 0.78 -27.11 16 2 C 0.04 1.07 5.31 -17.43 -0.09 0.98 16 3 Si 0.87 22.59 25.07 -169.99 -4.26 18.33 16 4 H -0.29 -7.29 6.70 56.52 0.38 -6.92 16 5 H -0.27 -6.78 7.11 56.52 0.40 -6.37 16 6 H -0.30 -8.04 7.11 56.52 0.40 -7.64 16 7 C -0.25 -7.00 8.25 -15.06 -0.12 -7.12 16 8 H 0.08 2.34 7.04 -52.48 -0.37 1.97 16 9 N -0.60 -14.13 2.00 -164.39 -0.33 -14.46 16 10 C 0.14 3.03 4.46 -4.04 -0.02 3.01 16 11 C -0.13 -2.51 5.46 -26.73 -0.15 -2.65 16 12 C -0.12 -1.90 4.95 -26.73 -0.13 -2.03 16 13 C 0.08 1.20 3.41 -25.70 -0.09 1.11 16 14 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 15 C -0.15 -1.69 6.58 -24.42 -0.16 -1.85 16 16 C -0.16 -1.54 7.02 -24.72 -0.17 -1.71 16 17 C 0.05 0.61 7.80 37.88 0.30 0.91 16 18 O -0.37 -6.23 10.74 -35.23 -0.38 -6.61 16 19 C 0.17 3.50 3.41 -66.81 -0.23 3.28 16 20 C -0.14 -2.65 6.42 -25.07 -0.16 -2.81 16 21 C -0.12 -1.98 6.91 -24.74 -0.17 -2.16 16 22 C -0.12 -2.00 6.83 -25.07 -0.17 -2.17 16 23 C -0.13 -2.48 6.16 -25.61 -0.16 -2.64 16 24 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 25 H 0.03 0.64 7.97 -51.93 -0.41 0.23 16 26 H 0.05 1.23 3.50 -51.93 -0.18 1.05 16 27 H 0.08 1.74 7.95 -51.93 -0.41 1.33 16 28 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 31 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.08 0.87 8.06 -51.93 -0.42 0.45 16 33 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.05 0.92 7.86 -51.93 -0.41 0.51 16 38 H 0.08 1.86 7.23 -51.93 -0.38 1.48 16 39 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 42 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 44 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.08 1.67 6.65 -51.93 -0.35 1.33 16 LS Contribution 342.37 15.07 5.16 5.16 Total: -1.00 -30.65 342.37 -8.99 -39.63 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -8.42 Total: 0.92 kcal Atomic # 6 Polarization: -14.34 SS G_CDS: -1.53 Total: -15.86 kcal Atomic # 7 Polarization: -42.01 SS G_CDS: 0.45 Total: -41.57 kcal Atomic # 8 Polarization: -6.23 SS G_CDS: -0.38 Total: -6.61 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -4.26 Total: 18.33 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.65 -8.99 -39.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087248393.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.070 kcal (2) G-P(sol) polarization free energy of solvation -30.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds