Wall clock time and date at job start Mon Mar 30 2020 07:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86804 * 120.00100 * 2 1 4 4 H 1.48495 * 109.47172 * 84.36311 * 3 2 1 5 5 H 1.48501 * 109.46890 * 204.36069 * 3 2 1 6 6 H 1.48498 * 109.46858 * 324.35939 * 3 2 1 7 7 C 1.38809 * 120.00040 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99996 * 21.20934 * 7 2 1 9 9 N 1.36937 * 120.00463 * 201.21196 * 7 2 1 10 10 C 1.46501 * 119.99694 * 39.92814 * 9 7 2 11 11 C 1.52996 * 109.46865 * 90.00712 * 10 9 7 12 12 C 1.53004 * 109.47179 * 179.97438 * 11 10 9 13 13 C 1.52996 * 109.47179 * 179.97438 * 12 11 10 14 14 H 1.08994 * 110.27970 * 54.29508 * 13 12 11 15 15 C 1.54949 * 110.30731 * 176.39013 * 13 12 11 16 16 C 1.55415 * 100.89109 * 155.28379 * 15 13 12 17 17 C 1.54384 * 102.31339 * 325.99166 * 16 15 13 18 18 O 1.43240 * 107.58407 * 21.28298 * 17 16 15 19 19 C 1.46502 * 119.99756 * 219.93151 * 9 7 2 20 20 C 1.54266 * 110.03245 * 62.78073 * 19 9 7 21 21 C 1.54895 * 104.19369 * 217.10078 * 20 19 9 22 22 C 1.54889 * 102.74765 * 37.94154 * 21 20 19 23 23 C 1.53873 * 110.03586 * 305.60698 * 19 9 7 24 24 H 0.96998 * 120.00000 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.46527 * 209.99765 * 10 9 7 26 26 H 1.08994 * 109.47056 * 330.00111 * 10 9 7 27 27 H 1.09004 * 109.47199 * 299.99754 * 11 10 9 28 28 H 1.08999 * 109.47473 * 59.99465 * 11 10 9 29 29 H 1.08997 * 109.47027 * 299.99631 * 12 11 10 30 30 H 1.08999 * 109.47245 * 59.99460 * 12 11 10 31 31 H 1.08991 * 111.12202 * 273.27196 * 15 13 12 32 32 H 1.09002 * 111.12696 * 37.44275 * 15 13 12 33 33 H 1.08999 * 110.88627 * 207.74798 * 16 15 13 34 34 H 1.09003 * 110.93597 * 84.25193 * 16 15 13 35 35 H 1.08999 * 109.82742 * 261.77461 * 17 16 15 36 36 H 1.08991 * 109.90745 * 140.84176 * 17 16 15 37 37 H 1.09004 * 110.01275 * 184.21521 * 19 9 7 38 38 H 1.09004 * 110.48662 * 335.78232 * 20 19 9 39 39 H 1.09000 * 110.49029 * 98.42145 * 20 19 9 40 40 H 1.08997 * 110.75599 * 279.62356 * 21 20 19 41 41 H 1.09006 * 110.75132 * 156.25704 * 21 20 19 42 42 H 1.08992 * 110.48383 * 203.37928 * 22 21 20 43 43 H 1.09003 * 110.48578 * 80.73438 * 22 21 20 44 44 H 1.08993 * 110.03501 * 238.57014 * 23 19 9 45 45 H 1.09000 * 110.03033 * 0.02562 * 23 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3786 2.1152 1.3932 5 1 3.6022 1.4086 -0.5775 6 1 1.5123 2.6153 -0.8158 7 6 2.0102 -1.2021 0.0005 8 1 1.5251 -2.1059 -0.3374 9 7 3.3100 -1.2422 0.4296 10 6 3.7216 -0.4541 1.5940 11 6 3.5455 -1.2897 2.8634 12 6 3.9759 -0.4668 4.0794 13 6 3.7992 -1.3022 5.3490 14 1 4.3283 -2.2504 5.2539 15 6 4.3145 -0.5202 6.5834 16 6 3.4899 -1.1877 7.7191 17 6 2.1533 -1.5032 7.0138 18 8 2.4045 -1.5329 5.6039 19 6 4.2889 -2.0732 -0.2758 20 6 4.4566 -1.5758 -1.7264 21 6 4.6383 -2.8726 -2.5538 22 6 3.6609 -3.8572 -1.8652 23 6 3.7830 -3.5237 -0.3640 24 1 -0.4850 0.8400 0.0004 25 1 4.7686 -0.1698 1.4885 26 1 3.1064 0.4432 1.6612 27 1 2.4985 -1.5741 2.9689 28 1 4.1607 -2.1870 2.7961 29 1 5.0229 -0.1828 3.9738 30 1 3.3611 0.4306 4.1470 31 1 5.3835 -0.6755 6.7286 32 1 4.0812 0.5414 6.5014 33 1 3.3376 -0.4955 8.5472 34 1 3.9717 -2.1025 8.0642 35 1 1.4224 -0.7277 7.2428 36 1 1.7795 -2.4725 7.3433 37 1 5.2470 -2.0427 0.2432 38 1 3.5657 -1.0380 -2.0507 39 1 5.3388 -0.9415 -1.8127 40 1 5.6641 -3.2346 -2.4844 41 1 4.3544 -2.7102 -3.5937 42 1 3.9624 -4.8877 -2.0527 43 1 2.6415 -3.6878 -2.2119 44 1 4.4959 -4.1973 0.1114 45 1 2.8090 -3.6093 0.1177 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087248393.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:04 Heat of formation + Delta-G solvation = -65.590300 kcal Electronic energy + Delta-G solvation = -21453.436412 eV Core-core repulsion = 18469.721618 eV Total energy + Delta-G solvation = -2983.714794 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.40244 -39.50121 -36.71162 -34.63767 -33.27531 -32.91374 -30.16949 -29.37232 -28.43926 -26.73962 -24.46249 -22.99946 -22.23450 -21.67216 -21.28628 -20.66675 -18.32256 -17.84117 -17.25648 -16.91310 -16.66796 -15.96405 -15.85178 -15.29447 -14.93426 -14.76602 -14.39181 -14.21860 -13.98128 -13.88223 -13.68496 -13.09117 -12.74687 -12.63955 -12.45003 -12.33141 -12.26247 -12.19433 -11.93470 -11.79898 -11.73499 -11.66027 -11.61427 -11.38474 -11.34340 -11.23710 -11.11866 -10.54027 -10.42330 -8.58691 -8.13447 -5.51400 1.29616 1.38758 1.50770 2.45929 2.96147 3.09519 3.37245 3.61645 3.80252 3.97566 4.00822 4.01935 4.13382 4.24151 4.27053 4.34968 4.40836 4.57001 4.67348 4.69116 4.76181 4.79248 4.84681 4.88864 4.90462 4.93441 4.95656 4.97287 4.99812 5.05265 5.10781 5.18941 5.22538 5.26534 5.31526 5.44185 5.52811 5.58366 5.67714 5.69363 6.05204 6.22800 6.29810 7.11445 7.75117 8.16516 9.06979 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.017504 B = 0.005667 C = 0.004887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.208934 B = 4939.528059 C = 5728.081451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.025 4.025 3 Si 0.938 3.062 4 H -0.281 1.281 5 H -0.253 1.253 6 H -0.314 1.314 7 C -0.227 4.227 8 H 0.038 0.962 9 N -0.612 5.612 10 C 0.132 3.868 11 C -0.114 4.114 12 C -0.113 4.113 13 C 0.076 3.924 14 H 0.074 0.926 15 C -0.146 4.146 16 C -0.146 4.146 17 C 0.036 3.964 18 O -0.415 6.415 19 C 0.164 3.836 20 C -0.138 4.138 21 C -0.110 4.110 22 C -0.116 4.116 23 C -0.129 4.129 24 H 0.258 0.742 25 H 0.066 0.934 26 H 0.025 0.975 27 H 0.025 0.975 28 H 0.062 0.938 29 H 0.100 0.900 30 H 0.046 0.954 31 H 0.107 0.893 32 H 0.075 0.925 33 H 0.098 0.902 34 H 0.089 0.911 35 H 0.064 0.936 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.039 0.961 39 H 0.062 0.938 40 H 0.087 0.913 41 H 0.062 0.938 42 H 0.079 0.921 43 H 0.035 0.965 44 H 0.073 0.927 45 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.739 -3.345 10.753 18.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.220 4.220 3 Si 0.768 3.232 4 H -0.209 1.209 5 H -0.177 1.177 6 H -0.243 1.243 7 C -0.357 4.357 8 H 0.056 0.944 9 N -0.333 5.333 10 C 0.008 3.992 11 C -0.154 4.154 12 C -0.151 4.151 13 C 0.019 3.981 14 H 0.092 0.908 15 C -0.184 4.184 16 C -0.183 4.183 17 C -0.040 4.040 18 O -0.336 6.336 19 C 0.058 3.942 20 C -0.178 4.178 21 C -0.147 4.147 22 C -0.154 4.154 23 C -0.168 4.168 24 H 0.067 0.933 25 H 0.084 0.916 26 H 0.043 0.957 27 H 0.044 0.956 28 H 0.081 0.919 29 H 0.118 0.882 30 H 0.065 0.935 31 H 0.125 0.875 32 H 0.094 0.906 33 H 0.117 0.883 34 H 0.108 0.892 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.097 0.903 38 H 0.058 0.942 39 H 0.081 0.919 40 H 0.105 0.895 41 H 0.081 0.919 42 H 0.097 0.903 43 H 0.054 0.946 44 H 0.092 0.908 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 14.472 -3.293 10.593 18.234 hybrid contribution -0.781 0.990 -0.040 1.261 sum 13.691 -2.304 10.553 17.439 Atomic orbital electron populations 1.70001 1.07730 1.26902 1.55504 1.26093 0.95538 1.00978 0.99391 0.85897 0.79768 0.80723 0.76840 1.20864 1.17699 1.24348 1.18406 0.87297 0.92225 1.37765 0.94402 1.44411 1.06170 1.53554 1.29206 1.21308 0.97749 0.93331 0.86860 1.21850 0.99950 0.99001 0.94633 1.21727 1.02317 0.97896 0.93197 1.23157 0.81554 0.98059 0.95344 0.90822 1.23337 1.01974 1.00116 0.92936 1.23117 0.94246 1.02364 0.98583 1.23315 0.98660 1.01489 0.80554 1.88513 1.27071 1.93505 1.24494 1.21338 0.91240 0.89922 0.91693 1.22809 1.00132 0.97895 0.96936 1.22380 0.99736 0.94440 0.98189 1.22235 0.98601 0.99483 0.95082 1.22468 1.00370 0.97266 0.96692 0.93321 0.91573 0.95687 0.95577 0.91939 0.88200 0.93473 0.87485 0.90588 0.88335 0.89234 0.91810 0.91126 0.90322 0.94173 0.91889 0.89473 0.91895 0.90263 0.94613 0.90839 0.94538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.52 13.97 21.65 0.30 -62.22 16 2 C -0.02 -1.50 5.31 84.86 0.45 -1.05 16 3 Si 0.94 48.20 25.07 68.60 1.72 49.92 16 4 H -0.28 -13.98 6.70 99.48 0.67 -13.31 16 5 H -0.25 -12.19 7.11 99.48 0.71 -11.48 16 6 H -0.31 -16.48 7.11 99.48 0.71 -15.78 16 7 C -0.23 -13.06 8.25 84.03 0.69 -12.37 16 8 H 0.04 2.46 7.04 -2.91 -0.02 2.44 16 9 N -0.61 -28.82 2.00 -674.02 -1.35 -30.17 16 10 C 0.13 5.64 4.46 86.38 0.39 6.02 16 11 C -0.11 -4.44 5.46 30.59 0.17 -4.27 16 12 C -0.11 -3.47 4.95 30.59 0.15 -3.32 16 13 C 0.08 2.06 3.41 31.26 0.11 2.16 16 14 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 15 C -0.15 -2.76 6.58 32.09 0.21 -2.54 16 16 C -0.15 -2.44 7.02 31.89 0.22 -2.22 16 17 C 0.04 0.87 7.80 72.45 0.56 1.44 16 18 O -0.42 -14.15 10.74 -148.98 -1.60 -15.75 16 19 C 0.16 6.31 3.41 45.71 0.16 6.46 16 20 C -0.14 -5.11 6.42 31.67 0.20 -4.90 16 21 C -0.11 -3.24 6.91 31.89 0.22 -3.02 16 22 C -0.12 -3.80 6.83 31.67 0.22 -3.59 16 23 C -0.13 -4.71 6.16 31.32 0.19 -4.51 16 24 H 0.26 16.11 8.31 -92.71 -0.77 15.34 16 25 H 0.07 2.38 7.97 -2.39 -0.02 2.37 16 26 H 0.03 1.21 3.50 -2.39 -0.01 1.20 16 27 H 0.03 1.24 7.95 -2.39 -0.02 1.22 16 28 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 29 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 30 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.08 1.48 8.06 -2.39 -0.02 1.46 16 33 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.08 2.60 7.86 -2.39 -0.02 2.58 16 38 H 0.04 1.81 7.23 -2.38 -0.02 1.79 16 39 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 42 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 43 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 45 H 0.04 1.62 6.65 -2.39 -0.02 1.60 16 Total: -1.00 -71.97 342.37 3.90 -68.07 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: 0.88 Total: 15.86 kcal Atomic # 6 Polarization: -29.66 SS G_CDS: 3.94 Total: -25.71 kcal Atomic # 7 Polarization: -91.34 SS G_CDS: -1.04 Total: -92.39 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: -1.60 Total: -15.75 kcal Atomic # 14 Polarization: 48.20 SS G_CDS: 1.72 Total: 49.92 kcal Total: -71.97 3.90 -68.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087248393.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.476 kcal (2) G-P(sol) polarization free energy of solvation -71.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds