Wall clock time and date at job start Mon Mar 30 2020 07:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00235 * 2 1 4 4 H 1.48497 * 109.46994 * 275.65012 * 3 2 1 5 5 H 1.48503 * 109.46907 * 35.64726 * 3 2 1 6 6 H 1.48491 * 109.47184 * 155.64662 * 3 2 1 7 7 C 1.37879 * 119.99517 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00323 * 350.03097 * 7 2 1 9 9 C 1.50704 * 119.99313 * 170.03264 * 7 2 1 10 10 C 1.52998 * 115.55596 * 323.99342 * 9 7 2 11 11 N 1.46897 * 109.47312 * 280.44496 * 10 9 7 12 12 C 1.46892 * 110.99963 * 174.87144 * 11 10 9 13 13 C 1.53010 * 109.47113 * 185.46285 * 12 11 10 14 14 O 1.42901 * 109.62494 * 298.56819 * 13 12 11 15 15 C 1.50479 * 109.78615 * 59.05308 * 13 12 11 16 16 C 1.54058 * 112.49606 * 213.95500 * 15 13 12 17 17 C 1.54061 * 112.82189 * 318.28653 * 16 15 13 18 18 C 1.50475 * 112.49747 * 318.28360 * 17 16 15 19 19 C 1.54238 * 108.52411 * 94.14578 * 18 17 16 20 20 C 1.45549 * 112.40788 * 280.01708 * 19 18 17 21 21 C 1.53009 * 117.51575 * 109.69816 * 9 7 2 22 22 C 1.53007 * 60.00088 * 107.47574 * 21 9 7 23 23 H 0.96998 * 119.99689 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47058 * 160.43482 * 10 9 7 25 25 H 1.09001 * 109.46703 * 40.44374 * 10 9 7 26 26 H 1.00902 * 110.99571 * 298.82313 * 11 10 9 27 27 H 1.09000 * 109.47433 * 65.46725 * 12 11 10 28 28 H 1.08999 * 109.47135 * 305.46348 * 12 11 10 29 29 H 0.96693 * 114.00005 * 55.01334 * 14 13 12 30 30 H 1.09001 * 108.87759 * 334.73709 * 15 13 12 31 31 H 1.09004 * 108.87342 * 93.17818 * 15 13 12 32 32 H 1.09003 * 108.81218 * 197.42393 * 16 15 13 33 33 H 1.09005 * 108.72596 * 79.08645 * 16 15 13 34 34 H 1.08996 * 108.88034 * 197.50685 * 17 16 15 35 35 H 1.09002 * 108.87963 * 79.05779 * 17 16 15 36 36 H 1.09004 * 109.62833 * 334.43879 * 18 17 16 37 37 H 1.08994 * 109.63228 * 213.85925 * 18 17 16 38 38 H 1.09000 * 108.89622 * 159.26267 * 19 18 17 39 39 H 1.08998 * 108.89428 * 40.77086 * 19 18 17 40 40 H 1.08998 * 108.89530 * 301.18390 * 20 19 18 41 41 H 1.08994 * 108.81475 * 182.63517 * 20 19 18 42 42 H 1.08998 * 117.49956 * 214.96964 * 21 9 7 43 43 H 1.08999 * 117.49930 * 359.97438 * 21 9 7 44 44 H 1.08997 * 117.49735 * 252.50790 * 22 21 9 45 45 H 1.08997 * 117.51216 * 107.47871 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3774 2.1153 -1.3933 5 1 1.5114 2.6153 0.8160 6 1 3.6013 1.4086 0.5773 7 6 2.0045 -1.1941 0.0005 8 1 1.4767 -2.1223 0.1629 9 6 3.4944 -1.2040 -0.2254 10 6 4.0180 -0.1666 -1.2206 11 7 3.7916 -0.6448 -2.5910 12 6 4.1709 0.3780 -3.5748 13 6 3.7956 -0.1008 -4.9787 14 8 4.5095 -1.3006 -5.2835 15 6 2.3153 -0.3617 -5.0492 16 6 1.9675 -1.5358 -5.9840 17 6 2.7910 -1.5271 -7.2860 18 6 2.9366 -0.1463 -7.8661 19 6 4.2618 0.4601 -7.3612 20 6 4.1505 0.9897 -6.0101 21 6 4.3878 -1.5532 0.9667 22 6 4.2077 -2.5567 -0.1742 23 1 -0.4849 0.8401 0.0004 24 1 5.0855 -0.0155 -1.0601 25 1 3.4914 0.7763 -1.0731 26 1 4.2854 -1.5086 -2.7587 27 1 5.2462 0.5492 -3.5248 28 1 3.6445 1.3067 -3.3548 29 1 4.3875 -2.0066 -4.6342 30 1 1.9489 -0.5877 -4.0478 31 1 1.8156 0.5371 -5.4108 32 1 0.9087 -1.4816 -6.2374 33 1 2.1546 -2.4709 -5.4560 34 1 2.2995 -2.1673 -8.0185 35 1 3.7829 -1.9288 -7.0786 36 1 2.1024 0.4764 -7.5428 37 1 2.9523 -0.2061 -8.9543 38 1 4.5599 1.2654 -8.0326 39 1 5.0313 -0.3118 -7.3755 40 1 3.3757 1.7562 -5.9942 41 1 5.1014 1.4435 -5.7310 42 1 5.3485 -1.0438 1.0419 43 1 3.8980 -1.7754 1.9147 44 1 3.5993 -3.4393 0.0233 45 1 5.0496 -2.7076 -0.8497 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088255438.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:40:19 Heat of formation + Delta-G solvation = -22.261809 kcal Electronic energy + Delta-G solvation = -22182.998162 eV Core-core repulsion = 19201.162232 eV Total energy + Delta-G solvation = -2981.835930 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.86503 -37.47010 -35.41899 -33.83161 -32.36402 -32.14303 -31.07021 -27.32817 -25.72598 -24.47982 -23.97625 -22.11939 -21.21945 -20.09503 -19.30811 -19.08056 -17.02540 -16.01986 -15.80016 -15.52189 -14.88697 -14.76556 -14.46148 -13.84179 -13.79898 -13.62407 -13.08948 -12.78256 -12.74631 -12.56348 -12.32402 -12.07733 -11.77662 -11.22861 -11.07052 -10.96858 -10.78840 -10.59486 -10.52524 -10.44107 -10.29558 -10.19138 -9.83834 -9.79057 -9.47011 -9.27608 -9.22027 -8.70158 -8.34872 -7.80564 -6.10125 -4.01694 3.21214 3.34127 3.37754 4.32253 4.38424 4.42654 4.82875 4.84548 5.00924 5.01655 5.22257 5.30647 5.41116 5.44677 5.50612 5.60300 5.65053 5.67313 5.80202 5.84359 5.90883 5.95100 6.06587 6.10022 6.19050 6.22737 6.25448 6.30482 6.36703 6.38913 6.45522 6.48332 6.52699 6.63874 6.72322 6.76632 6.85306 6.97529 7.13407 7.54547 7.74313 7.85053 7.90732 8.53874 8.94200 9.55102 11.02733 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.022243 B = 0.006065 C = 0.005750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.528770 B = 4615.515150 C = 4868.462152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.080 3.920 3 Si 0.897 3.103 4 H -0.283 1.283 5 H -0.303 1.303 6 H -0.269 1.269 7 C -0.466 4.466 8 H 0.076 0.924 9 C 0.018 3.982 10 C 0.094 3.906 11 N -0.663 5.663 12 C 0.028 3.972 13 C 0.150 3.850 14 O -0.555 6.555 15 C -0.149 4.149 16 C -0.100 4.100 17 C -0.121 4.121 18 C -0.114 4.114 19 C -0.110 4.110 20 C -0.103 4.103 21 C -0.212 4.212 22 C -0.188 4.188 23 H 0.264 0.736 24 H 0.012 0.988 25 H 0.062 0.938 26 H 0.332 0.668 27 H 0.029 0.971 28 H 0.076 0.924 29 H 0.373 0.627 30 H 0.097 0.903 31 H 0.056 0.944 32 H 0.049 0.951 33 H 0.057 0.943 34 H 0.042 0.958 35 H 0.083 0.917 36 H 0.059 0.941 37 H 0.053 0.947 38 H 0.049 0.951 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.058 0.942 42 H 0.064 0.936 43 H 0.085 0.915 44 H 0.083 0.917 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.496 0.538 -12.671 15.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.123 4.123 3 Si 0.730 3.270 4 H -0.211 1.211 5 H -0.232 1.232 6 H -0.195 1.195 7 C -0.503 4.503 8 H 0.094 0.906 9 C 0.017 3.983 10 C -0.034 4.034 11 N -0.294 5.294 12 C -0.102 4.102 13 C 0.109 3.891 14 O -0.362 6.362 15 C -0.187 4.187 16 C -0.138 4.138 17 C -0.159 4.159 18 C -0.152 4.152 19 C -0.147 4.147 20 C -0.140 4.140 21 C -0.250 4.250 22 C -0.226 4.226 23 H 0.074 0.926 24 H 0.030 0.970 25 H 0.079 0.921 26 H 0.150 0.850 27 H 0.047 0.953 28 H 0.094 0.906 29 H 0.221 0.779 30 H 0.115 0.885 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.061 0.939 35 H 0.102 0.898 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.077 0.923 42 H 0.083 0.917 43 H 0.104 0.896 44 H 0.101 0.899 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 7.825 1.178 -13.188 15.380 hybrid contribution 1.200 0.683 0.661 1.530 sum 9.025 1.861 -12.527 15.551 Atomic orbital electron populations 1.69908 1.06300 1.26938 1.49781 1.24925 0.94489 0.98819 0.94051 0.86753 0.79609 0.83757 0.76858 1.21147 1.23217 1.19540 1.20229 0.87559 0.94652 1.47881 0.90644 1.19300 0.94424 0.91710 0.92881 1.21902 0.95576 0.98294 0.87618 1.60192 1.62176 1.05084 1.01985 1.22683 0.97922 0.96905 0.92648 1.20823 0.91327 0.85096 0.91830 1.86455 1.73038 1.24433 1.52229 1.22023 0.95480 0.98754 1.02421 1.21634 0.98569 0.98448 0.95135 1.21451 1.02040 0.96404 0.95978 1.21297 0.97465 0.97412 0.98978 1.20309 0.98372 1.00447 0.95568 1.20480 1.01729 0.96755 0.95079 1.23187 1.01028 1.05728 0.95103 1.22694 1.02532 0.95050 1.02314 0.92646 0.96965 0.92105 0.84951 0.95335 0.90572 0.77922 0.88457 0.92499 0.93173 0.92385 0.93935 0.89820 0.92196 0.92807 0.93235 0.91169 0.91406 0.92300 0.91712 0.89600 0.89882 0.91477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.84 13.96 55.43 0.77 -26.06 16 2 C 0.08 2.25 5.44 -17.82 -0.10 2.15 16 3 Si 0.90 22.09 24.31 -169.99 -4.13 17.96 16 4 H -0.28 -6.77 6.98 56.52 0.39 -6.38 16 5 H -0.30 -7.57 7.11 56.52 0.40 -7.17 16 6 H -0.27 -6.38 6.48 56.52 0.37 -6.01 16 7 C -0.47 -12.84 9.59 -34.44 -0.33 -13.17 16 8 H 0.08 2.27 8.06 -52.49 -0.42 1.85 16 9 C 0.02 0.42 1.47 -155.65 -0.23 0.19 16 10 C 0.09 1.97 4.46 -3.83 -0.02 1.95 16 11 N -0.66 -12.01 5.29 -113.78 -0.60 -12.61 16 12 C 0.03 0.45 4.72 -3.82 -0.02 0.44 16 13 C 0.15 2.09 0.80 -91.23 -0.07 2.01 16 14 O -0.55 -7.26 8.56 -35.23 -0.30 -7.56 16 15 C -0.15 -2.25 4.76 -27.44 -0.13 -2.38 16 16 C -0.10 -1.36 5.37 -25.63 -0.14 -1.50 16 17 C -0.12 -1.47 5.28 -27.44 -0.14 -1.61 16 18 C -0.11 -1.30 5.61 -27.34 -0.15 -1.45 16 19 C -0.11 -1.26 5.17 -29.60 -0.15 -1.41 16 20 C -0.10 -1.28 4.57 -29.60 -0.14 -1.42 16 21 C -0.21 -4.41 9.88 -26.72 -0.26 -4.68 16 22 C -0.19 -3.72 9.61 -26.72 -0.26 -3.97 16 23 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 24 H 0.01 0.24 7.95 -51.93 -0.41 -0.17 16 25 H 0.06 1.40 1.68 -51.93 -0.09 1.31 16 26 H 0.33 5.32 6.96 -39.29 -0.27 5.04 16 27 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.08 1.34 8.08 -51.93 -0.42 0.92 16 29 H 0.37 4.45 7.50 45.56 0.34 4.79 16 30 H 0.10 1.80 6.86 -51.93 -0.36 1.45 16 31 H 0.06 0.85 6.63 -51.93 -0.34 0.50 16 32 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.08 1.06 5.32 -51.93 -0.28 0.78 16 36 H 0.06 0.71 6.98 -51.93 -0.36 0.35 16 37 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.86 6.76 -51.93 -0.35 0.51 16 40 H 0.07 0.83 7.47 -51.93 -0.39 0.44 16 41 H 0.06 0.71 7.97 -51.93 -0.41 0.30 16 42 H 0.06 1.24 8.09 -51.93 -0.42 0.82 16 43 H 0.09 1.82 8.14 -51.93 -0.42 1.40 16 44 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 45 H 0.07 1.15 8.08 -51.93 -0.42 0.73 16 LS Contribution 327.26 15.07 4.93 4.93 Total: -1.00 -28.81 327.26 -8.64 -37.45 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: -7.17 Total: 10.75 kcal Atomic # 6 Polarization: -22.71 SS G_CDS: -2.14 Total: -24.85 kcal Atomic # 7 Polarization: -38.85 SS G_CDS: 0.17 Total: -38.68 kcal Atomic # 8 Polarization: -7.26 SS G_CDS: -0.30 Total: -7.56 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.13 Total: 17.96 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -28.81 -8.64 -37.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088255438.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.189 kcal (2) G-P(sol) polarization free energy of solvation -28.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds