Wall clock time and date at job start Mon Mar 30 2020 07:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00235 * 2 1 4 4 H 1.48497 * 109.46994 * 275.65012 * 3 2 1 5 5 H 1.48503 * 109.46907 * 35.64726 * 3 2 1 6 6 H 1.48491 * 109.47184 * 155.64662 * 3 2 1 7 7 C 1.37879 * 119.99517 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00323 * 350.03097 * 7 2 1 9 9 C 1.50704 * 119.99313 * 170.03264 * 7 2 1 10 10 C 1.52998 * 115.55596 * 323.99342 * 9 7 2 11 11 N 1.46897 * 109.47312 * 280.44496 * 10 9 7 12 12 C 1.46892 * 110.99963 * 174.87144 * 11 10 9 13 13 C 1.53010 * 109.47113 * 185.46285 * 12 11 10 14 14 O 1.42901 * 109.62494 * 298.56819 * 13 12 11 15 15 C 1.50479 * 109.78615 * 59.05308 * 13 12 11 16 16 C 1.54058 * 112.49606 * 213.95500 * 15 13 12 17 17 C 1.54061 * 112.82189 * 318.28653 * 16 15 13 18 18 C 1.50475 * 112.49747 * 318.28360 * 17 16 15 19 19 C 1.54238 * 108.52411 * 94.14578 * 18 17 16 20 20 C 1.45549 * 112.40788 * 280.01708 * 19 18 17 21 21 C 1.53009 * 117.51575 * 109.69816 * 9 7 2 22 22 C 1.53007 * 60.00088 * 107.47574 * 21 9 7 23 23 H 0.96998 * 119.99689 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47058 * 160.43482 * 10 9 7 25 25 H 1.09001 * 109.46703 * 40.44374 * 10 9 7 26 26 H 1.00902 * 110.99571 * 298.82313 * 11 10 9 27 27 H 1.09000 * 109.47433 * 65.46725 * 12 11 10 28 28 H 1.08999 * 109.47135 * 305.46348 * 12 11 10 29 29 H 0.96693 * 114.00005 * 55.01334 * 14 13 12 30 30 H 1.09001 * 108.87759 * 334.73709 * 15 13 12 31 31 H 1.09004 * 108.87342 * 93.17818 * 15 13 12 32 32 H 1.09003 * 108.81218 * 197.42393 * 16 15 13 33 33 H 1.09005 * 108.72596 * 79.08645 * 16 15 13 34 34 H 1.08996 * 108.88034 * 197.50685 * 17 16 15 35 35 H 1.09002 * 108.87963 * 79.05779 * 17 16 15 36 36 H 1.09004 * 109.62833 * 334.43879 * 18 17 16 37 37 H 1.08994 * 109.63228 * 213.85925 * 18 17 16 38 38 H 1.09000 * 108.89622 * 159.26267 * 19 18 17 39 39 H 1.08998 * 108.89428 * 40.77086 * 19 18 17 40 40 H 1.08998 * 108.89530 * 301.18390 * 20 19 18 41 41 H 1.08994 * 108.81475 * 182.63517 * 20 19 18 42 42 H 1.08998 * 117.49956 * 214.96964 * 21 9 7 43 43 H 1.08999 * 117.49930 * 359.97438 * 21 9 7 44 44 H 1.08997 * 117.49735 * 252.50790 * 22 21 9 45 45 H 1.08997 * 117.51216 * 107.47871 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3774 2.1153 -1.3933 5 1 1.5114 2.6153 0.8160 6 1 3.6013 1.4086 0.5773 7 6 2.0045 -1.1941 0.0005 8 1 1.4767 -2.1223 0.1629 9 6 3.4944 -1.2040 -0.2254 10 6 4.0180 -0.1666 -1.2206 11 7 3.7916 -0.6448 -2.5910 12 6 4.1709 0.3780 -3.5748 13 6 3.7956 -0.1008 -4.9787 14 8 4.5095 -1.3006 -5.2835 15 6 2.3153 -0.3617 -5.0492 16 6 1.9675 -1.5358 -5.9840 17 6 2.7910 -1.5271 -7.2860 18 6 2.9366 -0.1463 -7.8661 19 6 4.2618 0.4601 -7.3612 20 6 4.1505 0.9897 -6.0101 21 6 4.3878 -1.5532 0.9667 22 6 4.2077 -2.5567 -0.1742 23 1 -0.4849 0.8401 0.0004 24 1 5.0855 -0.0155 -1.0601 25 1 3.4914 0.7763 -1.0731 26 1 4.2854 -1.5086 -2.7587 27 1 5.2462 0.5492 -3.5248 28 1 3.6445 1.3067 -3.3548 29 1 4.3875 -2.0066 -4.6342 30 1 1.9489 -0.5877 -4.0478 31 1 1.8156 0.5371 -5.4108 32 1 0.9087 -1.4816 -6.2374 33 1 2.1546 -2.4709 -5.4560 34 1 2.2995 -2.1673 -8.0185 35 1 3.7829 -1.9288 -7.0786 36 1 2.1024 0.4764 -7.5428 37 1 2.9523 -0.2061 -8.9543 38 1 4.5599 1.2654 -8.0326 39 1 5.0313 -0.3118 -7.3755 40 1 3.3757 1.7562 -5.9942 41 1 5.1014 1.4435 -5.7310 42 1 5.3485 -1.0438 1.0419 43 1 3.8980 -1.7754 1.9147 44 1 3.5993 -3.4393 0.0233 45 1 5.0496 -2.7076 -0.8497 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088255438.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:40:18 Heat of formation + Delta-G solvation = -41.287528 kcal Electronic energy + Delta-G solvation = -22183.823179 eV Core-core repulsion = 19201.162232 eV Total energy + Delta-G solvation = -2982.660947 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.97215 -39.10129 -36.56859 -35.12493 -34.27406 -33.39626 -32.22655 -28.89036 -27.43994 -25.62155 -25.39341 -23.41896 -22.74972 -21.14231 -20.93849 -20.33210 -18.66100 -17.58071 -17.40466 -16.69418 -16.19312 -16.10455 -15.53889 -15.43449 -15.10011 -14.94918 -14.63730 -14.50454 -13.94400 -13.74153 -13.57589 -13.52364 -13.18239 -12.90408 -12.32951 -12.30222 -12.18683 -12.16313 -11.86701 -11.69705 -11.48426 -11.41352 -11.29893 -11.17043 -11.10380 -10.85651 -10.49026 -10.46294 -10.32656 -9.19993 -8.27942 -6.22231 1.24681 1.34798 1.43671 2.32548 2.84621 3.12976 3.35949 3.58718 3.80852 3.85365 3.90484 4.10191 4.13104 4.23251 4.26338 4.38147 4.43888 4.45961 4.47290 4.56369 4.59177 4.66667 4.72238 4.82889 4.91739 5.00453 5.07272 5.10118 5.12402 5.20822 5.29084 5.34933 5.36051 5.46030 5.49207 5.52312 5.56102 5.58203 5.73873 5.79071 6.09676 6.32966 6.55824 6.75974 6.85513 7.37476 8.89135 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.022243 B = 0.006065 C = 0.005750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.528770 B = 4615.515150 C = 4868.462152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.024 3.976 3 Si 0.960 3.040 4 H -0.276 1.276 5 H -0.312 1.312 6 H -0.248 1.248 7 C -0.467 4.467 8 H 0.028 0.972 9 C -0.015 4.015 10 C 0.099 3.901 11 N -0.675 5.675 12 C 0.032 3.968 13 C 0.159 3.841 14 O -0.550 6.550 15 C -0.144 4.144 16 C -0.098 4.098 17 C -0.115 4.115 18 C -0.115 4.115 19 C -0.106 4.106 20 C -0.102 4.102 21 C -0.203 4.203 22 C -0.165 4.165 23 H 0.263 0.737 24 H 0.038 0.962 25 H 0.041 0.959 26 H 0.345 0.655 27 H 0.045 0.955 28 H 0.057 0.943 29 H 0.377 0.623 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.045 0.955 33 H 0.052 0.948 34 H 0.051 0.949 35 H 0.081 0.919 36 H 0.052 0.948 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.093 0.907 43 H 0.073 0.927 44 H 0.072 0.928 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.597 1.018 -14.191 18.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.174 4.174 3 Si 0.792 3.208 4 H -0.204 1.204 5 H -0.242 1.242 6 H -0.173 1.173 7 C -0.504 4.504 8 H 0.047 0.953 9 C -0.016 4.016 10 C -0.029 4.029 11 N -0.308 5.308 12 C -0.098 4.098 13 C 0.118 3.882 14 O -0.357 6.357 15 C -0.182 4.182 16 C -0.136 4.136 17 C -0.152 4.152 18 C -0.152 4.152 19 C -0.144 4.144 20 C -0.140 4.140 21 C -0.241 4.241 22 C -0.203 4.203 23 H 0.072 0.928 24 H 0.056 0.944 25 H 0.058 0.942 26 H 0.165 0.835 27 H 0.063 0.937 28 H 0.076 0.924 29 H 0.226 0.774 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.100 0.900 36 H 0.071 0.929 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.112 0.888 43 H 0.092 0.908 44 H 0.091 0.909 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 10.962 1.630 -14.713 18.420 hybrid contribution 0.190 0.383 1.151 1.228 sum 11.152 2.013 -13.562 17.673 Atomic orbital electron populations 1.70061 1.08231 1.27707 1.52527 1.25698 0.95086 1.02499 0.94081 0.85715 0.78953 0.79071 0.77109 1.20365 1.24162 1.17297 1.20416 0.90467 0.92718 1.46821 0.95325 1.19249 0.91920 0.95043 0.95398 1.21707 0.96408 0.96443 0.88387 1.60076 1.63217 1.06242 1.01308 1.22690 0.98500 0.95617 0.92987 1.20699 0.90311 0.85883 0.91354 1.86462 1.72650 1.24254 1.52368 1.21941 0.96580 0.99189 1.00447 1.21616 0.98729 0.97457 0.95794 1.21393 1.01503 0.97238 0.95082 1.21316 0.97295 0.96641 0.99963 1.20278 0.98097 1.00825 0.95170 1.20499 1.02157 0.96157 0.95194 1.23189 1.01216 1.05587 0.94115 1.22734 1.02428 0.93167 1.01924 0.92819 0.94444 0.94197 0.83509 0.93719 0.92429 0.77358 0.92377 0.92775 0.93644 0.92912 0.93021 0.90018 0.92886 0.91197 0.91538 0.91598 0.91393 0.91425 0.88838 0.90788 0.90902 0.87810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.52 13.96 21.45 0.30 -59.22 16 2 C 0.02 1.37 5.44 84.65 0.46 1.83 16 3 Si 0.96 46.26 24.31 68.60 1.67 47.93 16 4 H -0.28 -12.79 6.98 99.48 0.69 -12.09 16 5 H -0.31 -15.25 7.11 99.48 0.71 -14.54 16 6 H -0.25 -10.96 6.48 99.48 0.64 -10.31 16 7 C -0.47 -26.44 9.59 25.60 0.25 -26.19 16 8 H 0.03 1.82 8.06 -2.91 -0.02 1.80 16 9 C -0.01 -0.66 1.47 -52.92 -0.08 -0.74 16 10 C 0.10 3.89 4.46 86.30 0.38 4.28 16 11 N -0.68 -23.34 5.29 -513.90 -2.72 -26.06 16 12 C 0.03 0.95 4.72 86.31 0.41 1.36 16 13 C 0.16 4.14 0.80 -11.19 -0.01 4.13 16 14 O -0.55 -13.09 8.56 -148.98 -1.28 -14.37 16 15 C -0.14 -4.31 4.76 30.14 0.14 -4.17 16 16 C -0.10 -2.61 5.37 31.31 0.17 -2.44 16 17 C -0.11 -2.55 5.28 30.14 0.16 -2.39 16 18 C -0.11 -2.33 5.61 30.20 0.17 -2.16 16 19 C -0.11 -2.13 5.17 28.74 0.15 -1.98 16 20 C -0.10 -2.30 4.57 28.74 0.13 -2.17 16 21 C -0.20 -7.89 9.88 30.60 0.30 -7.59 16 22 C -0.17 -6.10 9.61 30.60 0.29 -5.81 16 23 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 24 H 0.04 1.30 7.95 -2.39 -0.02 1.28 16 25 H 0.04 1.76 1.68 -2.39 0.00 1.76 16 26 H 0.34 10.19 6.96 -89.69 -0.62 9.57 16 27 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.06 1.95 8.08 -2.39 -0.02 1.93 16 29 H 0.38 8.17 7.50 -74.06 -0.56 7.62 16 30 H 0.06 2.21 6.86 -2.39 -0.02 2.19 16 31 H 0.05 1.62 6.63 -2.39 -0.02 1.60 16 32 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.05 1.43 8.14 -2.38 -0.02 1.41 16 34 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.08 1.87 5.32 -2.39 -0.01 1.86 16 36 H 0.05 1.16 6.98 -2.39 -0.02 1.14 16 37 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.07 1.40 6.76 -2.39 -0.02 1.39 16 40 H 0.07 1.53 7.47 -2.39 -0.02 1.51 16 41 H 0.07 1.42 7.97 -2.39 -0.02 1.40 16 42 H 0.09 3.13 8.09 -2.39 -0.02 3.11 16 43 H 0.07 3.03 8.14 -2.39 -0.02 3.01 16 44 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16 45 H 0.10 3.09 8.08 -2.39 -0.02 3.07 16 Total: -1.00 -64.27 327.26 0.62 -63.65 By element: Atomic # 1 Polarization: 32.40 SS G_CDS: -0.28 Total: 32.12 kcal Atomic # 6 Polarization: -46.98 SS G_CDS: 2.93 Total: -44.05 kcal Atomic # 7 Polarization: -82.86 SS G_CDS: -2.42 Total: -85.28 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: -1.28 Total: -14.37 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 1.67 Total: 47.93 kcal Total: -64.27 0.62 -63.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088255438.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.361 kcal (2) G-P(sol) polarization free energy of solvation -64.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds