Wall clock time and date at job start Mon Mar 30 2020 07:41:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86802 * 120.00129 * 2 1 4 4 H 1.48499 * 109.46871 * 270.00177 * 3 2 1 5 5 H 1.48499 * 109.46940 * 29.99659 * 3 2 1 6 6 H 1.48492 * 109.46899 * 149.99936 * 3 2 1 7 7 C 1.37871 * 119.99625 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99665 * 157.20664 * 7 2 1 9 9 C 1.50706 * 120.00357 * 337.21183 * 7 2 1 10 10 C 1.52996 * 115.54627 * 324.52466 * 9 7 2 11 11 O 1.42894 * 109.47423 * 279.97742 * 10 9 7 12 12 C 1.42902 * 114.00011 * 179.26301 * 11 10 9 13 13 C 1.53003 * 109.47248 * 181.61637 * 12 11 10 14 14 N 1.46904 * 108.76803 * 58.00798 * 13 12 11 15 15 C 1.54067 * 108.87712 * 299.49773 * 13 12 11 16 16 C 1.54075 * 112.81574 * 197.50434 * 15 13 12 17 17 C 1.50469 * 112.49796 * 318.28045 * 16 15 13 18 18 C 1.54247 * 108.52691 * 94.14497 * 17 16 15 19 19 C 1.45538 * 112.40448 * 280.02383 * 18 17 16 20 20 C 1.50467 * 108.88001 * 176.51832 * 13 12 11 21 21 C 1.53001 * 117.51506 * 110.22806 * 9 7 2 22 22 C 1.53001 * 117.49549 * 178.85599 * 9 7 2 23 23 H 0.97006 * 119.99590 * 5.27282 * 1 2 3 24 24 H 1.09004 * 109.47035 * 159.97604 * 10 9 7 25 25 H 1.09001 * 109.47228 * 39.98031 * 10 9 7 26 26 H 1.09000 * 109.46979 * 61.61879 * 12 11 10 27 27 H 1.08995 * 109.47418 * 301.62123 * 12 11 10 28 28 H 1.00901 * 110.99953 * 293.81880 * 14 13 12 29 29 H 1.00901 * 111.00085 * 57.77239 * 14 13 12 30 30 H 1.09000 * 108.81313 * 318.36125 * 15 13 12 31 31 H 1.09005 * 108.81206 * 76.64414 * 15 13 12 32 32 H 1.08996 * 108.87680 * 197.50271 * 16 15 13 33 33 H 1.09001 * 108.87562 * 79.05983 * 16 15 13 34 34 H 1.09003 * 109.63216 * 334.43865 * 17 16 15 35 35 H 1.08998 * 109.78828 * 213.94794 * 17 16 15 36 36 H 1.09000 * 108.89568 * 159.26628 * 18 17 16 37 37 H 1.09005 * 108.89602 * 40.77616 * 18 17 16 38 38 H 1.09008 * 108.89071 * 301.18260 * 19 18 17 39 39 H 1.08996 * 108.89539 * 182.69732 * 19 18 17 40 40 H 1.09005 * 109.62744 * 334.64587 * 20 13 12 41 41 H 1.09000 * 109.62831 * 95.02875 * 20 13 12 42 42 H 1.09001 * 117.49535 * 214.96779 * 21 9 7 43 43 H 1.08995 * 117.50132 * 359.97438 * 21 9 7 44 44 H 1.08995 * 117.49952 * 359.97438 * 22 9 7 45 45 H 1.09003 * 117.49160 * 144.97159 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0213 -1.2307 -0.3618 9 6 1.3392 -2.4480 0.5066 10 6 0.3811 -2.2575 1.6841 11 8 1.1305 -2.1594 2.8969 12 6 0.3271 -1.9621 4.0621 13 6 1.2317 -1.8317 5.2892 14 7 2.1562 -0.7098 5.0777 15 6 2.0490 -3.1282 5.4460 16 6 2.6579 -3.2842 6.8527 17 6 3.2217 -1.9935 7.3824 18 6 2.1415 -1.3019 8.2391 19 6 1.1604 -0.5945 7.4296 20 6 0.3789 -1.5393 6.4939 21 6 0.9905 -3.5270 -0.5206 22 6 2.1475 -3.7461 0.4563 23 1 -0.4850 0.8366 -0.0772 24 1 -0.2959 -3.1097 1.7432 25 1 -0.1961 -1.3443 1.5388 26 1 -0.3404 -2.8140 4.1917 27 1 -0.2626 -1.0527 3.9472 28 1 2.7962 -0.9059 4.3227 29 1 1.6517 0.1479 4.9105 30 1 1.3982 -3.9800 5.2483 31 1 2.8550 -3.1266 4.7122 32 1 3.4549 -4.0266 6.8117 33 1 1.8844 -3.6373 7.5347 34 1 3.4990 -1.3463 6.5503 35 1 4.0994 -2.1983 7.9953 36 1 2.6244 -0.5911 8.9096 37 1 1.6286 -2.0556 8.8366 38 1 1.6742 0.1541 6.8264 39 1 0.4557 -0.0896 8.0903 40 1 -0.5475 -1.0589 6.1789 41 1 0.1504 -2.4689 7.0151 42 1 0.0785 -4.1012 -0.3574 43 1 1.2419 -3.3299 -1.5627 44 1 3.1603 -3.6932 0.0569 45 1 1.9970 -4.4642 1.2624 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088255931.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:41:16 Heat of formation + Delta-G solvation = -28.534355 kcal Electronic energy + Delta-G solvation = -22009.492639 eV Core-core repulsion = 19027.384711 eV Total energy + Delta-G solvation = -2982.107928 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.60346 -37.34345 -35.58592 -33.45948 -32.21957 -32.14255 -29.30532 -26.84260 -25.65414 -24.91366 -24.39390 -22.17995 -21.09990 -19.92883 -19.15332 -18.39328 -16.47249 -16.14971 -15.54929 -15.27659 -14.90305 -14.68953 -14.19085 -13.96615 -13.88791 -13.27062 -13.05690 -12.79178 -12.73215 -12.14765 -11.79601 -11.74979 -11.40861 -11.22468 -10.94549 -10.86356 -10.70978 -10.47700 -10.45058 -10.29314 -10.22884 -10.19943 -10.07376 -9.97507 -9.33862 -9.27095 -8.70146 -8.59700 -8.09165 -7.97072 -6.13921 -4.05931 3.24102 3.33018 3.40408 4.33722 4.36043 4.80854 4.93288 4.94521 5.06336 5.14417 5.30573 5.42417 5.50483 5.52485 5.60029 5.66727 5.78992 5.86714 5.94874 5.97842 6.13957 6.16743 6.23365 6.24342 6.34963 6.39414 6.42861 6.43709 6.52548 6.54608 6.61524 6.68290 6.73441 6.81141 6.88235 6.93548 7.06010 7.34774 7.50607 7.57309 7.88798 7.91091 8.26279 8.42203 8.84865 9.48022 10.89716 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.020141 B = 0.005948 C = 0.005213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.837700 B = 4705.993888 C = 5369.520825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.075 3.925 3 Si 0.886 3.114 4 H -0.282 1.282 5 H -0.285 1.285 6 H -0.270 1.270 7 C -0.485 4.485 8 H 0.062 0.938 9 C 0.057 3.943 10 C 0.092 3.908 11 O -0.376 6.376 12 C 0.033 3.967 13 C 0.131 3.869 14 N -0.826 5.826 15 C -0.096 4.096 16 C -0.110 4.110 17 C -0.127 4.127 18 C -0.103 4.103 19 C -0.113 4.113 20 C -0.106 4.106 21 C -0.199 4.199 22 C -0.200 4.200 23 H 0.262 0.738 24 H 0.007 0.993 25 H 0.096 0.904 26 H 0.034 0.966 27 H 0.039 0.961 28 H 0.350 0.650 29 H 0.334 0.666 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.050 0.950 33 H 0.049 0.951 34 H 0.104 0.896 35 H 0.043 0.957 36 H 0.047 0.953 37 H 0.043 0.957 38 H 0.091 0.909 39 H 0.041 0.959 40 H 0.057 0.943 41 H 0.063 0.937 42 H 0.062 0.938 43 H 0.080 0.920 44 H 0.074 0.926 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.909 -2.717 13.416 13.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.128 4.128 3 Si 0.713 3.287 4 H -0.208 1.208 5 H -0.211 1.211 6 H -0.194 1.194 7 C -0.522 4.522 8 H 0.080 0.920 9 C 0.056 3.944 10 C 0.017 3.983 11 O -0.295 6.295 12 C -0.047 4.047 13 C 0.038 3.962 14 N -0.357 5.357 15 C -0.134 4.134 16 C -0.147 4.147 17 C -0.165 4.165 18 C -0.140 4.140 19 C -0.151 4.151 20 C -0.144 4.144 21 C -0.237 4.237 22 C -0.237 4.237 23 H 0.072 0.928 24 H 0.025 0.975 25 H 0.114 0.886 26 H 0.052 0.948 27 H 0.057 0.943 28 H 0.164 0.836 29 H 0.147 0.853 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.123 0.877 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.062 0.938 38 H 0.109 0.891 39 H 0.059 0.941 40 H 0.076 0.924 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.098 0.902 44 H 0.093 0.907 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.199 -2.745 14.219 14.531 hybrid contribution -0.557 0.711 -1.144 1.458 sum 0.642 -2.034 13.075 13.248 Atomic orbital electron populations 1.69917 1.06309 1.26977 1.48041 1.24926 0.94555 0.99146 0.94196 0.86685 0.80578 0.83192 0.78212 1.20787 1.21085 1.19443 1.20432 0.99046 0.90700 1.42016 0.92033 1.18800 0.95369 0.88250 0.91962 1.22337 0.93351 1.00649 0.81983 1.87823 1.33760 1.93652 1.14282 1.23352 0.94224 0.98973 0.88139 1.20446 0.91599 0.91979 0.92184 1.59503 1.21225 1.04493 1.50445 1.21829 0.99441 0.95331 0.96833 1.21262 0.99299 0.97752 0.96409 1.21521 0.96550 0.97599 1.00795 1.20318 0.96991 0.99036 0.97660 1.20329 0.97527 0.99518 0.97711 1.21372 0.97447 1.00009 0.95617 1.22983 0.97295 1.06920 0.96528 1.22752 0.95523 1.03569 1.01868 0.92787 0.97514 0.88608 0.94815 0.94318 0.83569 0.85292 0.92605 0.91177 0.93148 0.93203 0.87735 0.93793 0.93374 0.93831 0.89105 0.94066 0.92385 0.91798 0.91925 0.90192 0.90740 0.91371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.02 11.17 55.43 0.62 -23.40 16 2 C 0.07 2.00 5.02 -17.82 -0.09 1.91 16 3 Si 0.89 20.69 29.60 -169.99 -5.03 15.66 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 6 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.49 -13.24 8.97 -34.44 -0.31 -13.55 16 8 H 0.06 1.69 7.92 -52.48 -0.42 1.28 16 9 C 0.06 1.43 1.98 -155.66 -0.31 1.12 16 10 C 0.09 2.20 5.59 37.16 0.21 2.41 16 11 O -0.38 -8.03 9.36 -35.23 -0.33 -8.36 16 12 C 0.03 0.57 4.61 37.16 0.17 0.74 16 13 C 0.13 1.88 0.59 -132.31 -0.08 1.80 16 14 N -0.83 -11.90 4.49 0.17 0.00 -11.90 16 15 C -0.10 -1.37 4.58 -25.61 -0.12 -1.49 16 16 C -0.11 -1.35 5.31 -27.43 -0.15 -1.49 16 17 C -0.13 -1.53 5.61 -27.34 -0.15 -1.69 16 18 C -0.10 -1.16 5.26 -29.60 -0.16 -1.31 16 19 C -0.11 -1.33 5.17 -29.60 -0.15 -1.48 16 20 C -0.11 -1.34 5.04 -27.35 -0.14 -1.47 16 21 C -0.20 -4.62 9.88 -26.73 -0.26 -4.89 16 22 C -0.20 -4.49 9.94 -26.73 -0.27 -4.76 16 23 H 0.26 6.84 8.32 -40.82 -0.34 6.50 16 24 H 0.01 0.15 7.95 -51.93 -0.41 -0.26 16 25 H 0.10 2.50 5.44 -51.93 -0.28 2.22 16 26 H 0.03 0.57 8.10 -51.93 -0.42 0.15 16 27 H 0.04 0.70 8.00 -51.93 -0.42 0.28 16 28 H 0.35 5.72 8.23 -39.29 -0.32 5.39 16 29 H 0.33 4.81 8.28 -39.29 -0.33 4.48 16 30 H 0.06 0.80 7.95 -51.93 -0.41 0.39 16 31 H 0.07 1.12 7.86 -51.93 -0.41 0.71 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.05 0.58 6.64 -51.93 -0.34 0.24 16 34 H 0.10 1.40 5.57 -51.93 -0.29 1.11 16 35 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.04 0.47 7.47 -51.93 -0.39 0.09 16 38 H 0.09 1.13 5.68 -51.92 -0.30 0.84 16 39 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.06 0.72 7.62 -51.93 -0.40 0.33 16 41 H 0.06 0.77 7.00 -51.93 -0.36 0.41 16 42 H 0.06 1.36 8.08 -51.93 -0.42 0.94 16 43 H 0.08 1.86 8.14 -51.93 -0.42 1.44 16 44 H 0.07 1.64 8.14 -51.93 -0.42 1.22 16 45 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 LS Contribution 336.58 15.07 5.07 5.07 Total: -1.00 -26.70 336.58 -9.47 -36.17 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: -8.01 Total: 10.91 kcal Atomic # 6 Polarization: -22.35 SS G_CDS: -1.80 Total: -24.15 kcal Atomic # 7 Polarization: -35.92 SS G_CDS: 0.62 Total: -35.30 kcal Atomic # 8 Polarization: -8.03 SS G_CDS: -0.33 Total: -8.36 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.03 Total: 15.66 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -26.70 -9.47 -36.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088255931.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.635 kcal (2) G-P(sol) polarization free energy of solvation -26.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds