Wall clock time and date at job start Mon Mar 30 2020 07:41:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86802 * 120.00129 * 2 1 4 4 H 1.48499 * 109.46871 * 270.00177 * 3 2 1 5 5 H 1.48499 * 109.46940 * 29.99659 * 3 2 1 6 6 H 1.48492 * 109.46899 * 149.99936 * 3 2 1 7 7 C 1.37871 * 119.99625 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99665 * 157.20664 * 7 2 1 9 9 C 1.50706 * 120.00357 * 337.21183 * 7 2 1 10 10 C 1.52996 * 115.54627 * 324.52466 * 9 7 2 11 11 O 1.42894 * 109.47423 * 279.97742 * 10 9 7 12 12 C 1.42902 * 114.00011 * 179.26301 * 11 10 9 13 13 C 1.53003 * 109.47248 * 181.61637 * 12 11 10 14 14 N 1.46904 * 108.76803 * 58.00798 * 13 12 11 15 15 C 1.54067 * 108.87712 * 299.49773 * 13 12 11 16 16 C 1.54075 * 112.81574 * 197.50434 * 15 13 12 17 17 C 1.50469 * 112.49796 * 318.28045 * 16 15 13 18 18 C 1.54247 * 108.52691 * 94.14497 * 17 16 15 19 19 C 1.45538 * 112.40448 * 280.02383 * 18 17 16 20 20 C 1.50467 * 108.88001 * 176.51832 * 13 12 11 21 21 C 1.53001 * 117.51506 * 110.22806 * 9 7 2 22 22 C 1.53001 * 117.49549 * 178.85599 * 9 7 2 23 23 H 0.97006 * 119.99590 * 5.27282 * 1 2 3 24 24 H 1.09004 * 109.47035 * 159.97604 * 10 9 7 25 25 H 1.09001 * 109.47228 * 39.98031 * 10 9 7 26 26 H 1.09000 * 109.46979 * 61.61879 * 12 11 10 27 27 H 1.08995 * 109.47418 * 301.62123 * 12 11 10 28 28 H 1.00901 * 110.99953 * 293.81880 * 14 13 12 29 29 H 1.00901 * 111.00085 * 57.77239 * 14 13 12 30 30 H 1.09000 * 108.81313 * 318.36125 * 15 13 12 31 31 H 1.09005 * 108.81206 * 76.64414 * 15 13 12 32 32 H 1.08996 * 108.87680 * 197.50271 * 16 15 13 33 33 H 1.09001 * 108.87562 * 79.05983 * 16 15 13 34 34 H 1.09003 * 109.63216 * 334.43865 * 17 16 15 35 35 H 1.08998 * 109.78828 * 213.94794 * 17 16 15 36 36 H 1.09000 * 108.89568 * 159.26628 * 18 17 16 37 37 H 1.09005 * 108.89602 * 40.77616 * 18 17 16 38 38 H 1.09008 * 108.89071 * 301.18260 * 19 18 17 39 39 H 1.08996 * 108.89539 * 182.69732 * 19 18 17 40 40 H 1.09005 * 109.62744 * 334.64587 * 20 13 12 41 41 H 1.09000 * 109.62831 * 95.02875 * 20 13 12 42 42 H 1.09001 * 117.49535 * 214.96779 * 21 9 7 43 43 H 1.08995 * 117.50132 * 359.97438 * 21 9 7 44 44 H 1.08995 * 117.49952 * 359.97438 * 22 9 7 45 45 H 1.09003 * 117.49160 * 144.97159 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0213 -1.2307 -0.3618 9 6 1.3392 -2.4480 0.5066 10 6 0.3811 -2.2575 1.6841 11 8 1.1305 -2.1594 2.8969 12 6 0.3271 -1.9621 4.0621 13 6 1.2317 -1.8317 5.2892 14 7 2.1562 -0.7098 5.0777 15 6 2.0490 -3.1282 5.4460 16 6 2.6579 -3.2842 6.8527 17 6 3.2217 -1.9935 7.3824 18 6 2.1415 -1.3019 8.2391 19 6 1.1604 -0.5945 7.4296 20 6 0.3789 -1.5393 6.4939 21 6 0.9905 -3.5270 -0.5206 22 6 2.1475 -3.7461 0.4563 23 1 -0.4850 0.8366 -0.0772 24 1 -0.2959 -3.1097 1.7432 25 1 -0.1961 -1.3443 1.5388 26 1 -0.3404 -2.8140 4.1917 27 1 -0.2626 -1.0527 3.9472 28 1 2.7962 -0.9059 4.3227 29 1 1.6517 0.1479 4.9105 30 1 1.3982 -3.9800 5.2483 31 1 2.8550 -3.1266 4.7122 32 1 3.4549 -4.0266 6.8117 33 1 1.8844 -3.6373 7.5347 34 1 3.4990 -1.3463 6.5503 35 1 4.0994 -2.1983 7.9953 36 1 2.6244 -0.5911 8.9096 37 1 1.6286 -2.0556 8.8366 38 1 1.6742 0.1541 6.8264 39 1 0.4557 -0.0896 8.0903 40 1 -0.5475 -1.0589 6.1789 41 1 0.1504 -2.4689 7.0151 42 1 0.0785 -4.1012 -0.3574 43 1 1.2419 -3.3299 -1.5627 44 1 3.1603 -3.6932 0.0569 45 1 1.9970 -4.4642 1.2624 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088255931.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:41:16 Heat of formation + Delta-G solvation = -42.101836 kcal Electronic energy + Delta-G solvation = -22010.080969 eV Core-core repulsion = 19027.384711 eV Total energy + Delta-G solvation = -2982.696258 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.76027 -39.05163 -37.20686 -34.66770 -34.25623 -33.15109 -30.44602 -28.44919 -27.50784 -26.39445 -25.62221 -23.35281 -22.91054 -21.08397 -20.86851 -19.54044 -18.35266 -17.47850 -16.95874 -16.71265 -16.41406 -16.39334 -15.65307 -15.60416 -14.98446 -14.69501 -14.33061 -14.15252 -13.75988 -13.61205 -13.38806 -13.07717 -12.96106 -12.81541 -12.62133 -12.49996 -12.29341 -12.11226 -11.97898 -11.49659 -11.44807 -11.28804 -11.18722 -11.13366 -11.05296 -10.90863 -10.60927 -10.36929 -9.92075 -9.28649 -8.17082 -6.15201 1.37430 1.42732 1.53923 2.39708 2.76818 3.00732 3.62827 3.71860 3.85347 3.94128 4.05495 4.22171 4.27734 4.39318 4.45815 4.46157 4.50503 4.54012 4.55792 4.64419 4.69055 4.78542 4.91350 4.92918 4.98677 5.01338 5.13544 5.16069 5.19284 5.27391 5.36638 5.43773 5.48306 5.50927 5.52207 5.53427 5.63706 5.70662 5.89039 5.96540 6.34318 6.39400 6.57468 6.62647 6.78404 7.40681 8.85748 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.020141 B = 0.005948 C = 0.005213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.837700 B = 4705.993888 C = 5369.520825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.037 3.963 3 Si 0.944 3.056 4 H -0.278 1.278 5 H -0.280 1.280 6 H -0.269 1.269 7 C -0.509 4.509 8 H 0.050 0.950 9 C 0.022 3.978 10 C 0.104 3.896 11 O -0.385 6.385 12 C 0.028 3.972 13 C 0.139 3.861 14 N -0.816 5.816 15 C -0.094 4.094 16 C -0.104 4.104 17 C -0.128 4.128 18 C -0.101 4.101 19 C -0.110 4.110 20 C -0.104 4.104 21 C -0.196 4.196 22 C -0.180 4.180 23 H 0.264 0.736 24 H 0.012 0.988 25 H 0.071 0.929 26 H 0.040 0.960 27 H 0.029 0.971 28 H 0.338 0.662 29 H 0.334 0.666 30 H 0.053 0.947 31 H 0.047 0.953 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.089 0.911 35 H 0.053 0.947 36 H 0.056 0.944 37 H 0.052 0.948 38 H 0.081 0.919 39 H 0.053 0.947 40 H 0.058 0.942 41 H 0.073 0.927 42 H 0.076 0.924 43 H 0.073 0.927 44 H 0.076 0.924 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.145 -2.805 15.034 15.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.164 4.164 3 Si 0.770 3.230 4 H -0.204 1.204 5 H -0.205 1.205 6 H -0.194 1.194 7 C -0.545 4.545 8 H 0.068 0.932 9 C 0.022 3.978 10 C 0.028 3.972 11 O -0.304 6.304 12 C -0.051 4.051 13 C 0.046 3.954 14 N -0.345 5.345 15 C -0.132 4.132 16 C -0.142 4.142 17 C -0.165 4.165 18 C -0.139 4.139 19 C -0.147 4.147 20 C -0.142 4.142 21 C -0.234 4.234 22 C -0.217 4.217 23 H 0.073 0.927 24 H 0.030 0.970 25 H 0.088 0.912 26 H 0.058 0.942 27 H 0.047 0.953 28 H 0.151 0.849 29 H 0.147 0.853 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.107 0.893 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.099 0.901 39 H 0.072 0.928 40 H 0.076 0.924 41 H 0.092 0.908 42 H 0.095 0.905 43 H 0.091 0.909 44 H 0.095 0.905 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.435 -2.836 15.847 16.162 hybrid contribution -0.645 0.704 -1.652 1.908 sum 0.791 -2.132 14.195 14.376 Atomic orbital electron populations 1.70007 1.07304 1.27644 1.48485 1.25530 0.95241 1.01765 0.93872 0.85777 0.79339 0.79692 0.78216 1.20394 1.20539 1.19392 1.20626 0.98741 0.92330 1.42833 0.93218 1.18972 0.97049 0.88573 0.93248 1.22012 0.92943 0.99462 0.82785 1.87805 1.34397 1.93686 1.14559 1.23627 0.94812 0.98710 0.87922 1.20494 0.91290 0.92159 0.91503 1.59571 1.20843 1.04494 1.49563 1.21800 0.98645 0.95005 0.97734 1.21221 0.99682 0.98157 0.95100 1.21498 0.97270 0.97176 1.00561 1.20305 0.96646 0.99366 0.97556 1.20299 0.97742 0.99095 0.97599 1.21370 0.97130 1.00807 0.94853 1.22967 0.98281 1.06146 0.96004 1.22730 0.95297 1.02048 1.01675 0.92658 0.96996 0.91169 0.94167 0.95266 0.84927 0.85321 0.92845 0.93377 0.92637 0.92056 0.89285 0.92873 0.92524 0.92945 0.90052 0.92810 0.92357 0.90791 0.90528 0.90853 0.90538 0.89840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -49.68 11.17 21.45 0.24 -49.44 16 2 C 0.04 1.99 5.02 84.65 0.42 2.41 16 3 Si 0.94 42.70 29.60 68.60 2.03 44.73 16 4 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 5 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 6 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 7 C -0.51 -28.05 8.97 25.60 0.23 -27.82 16 8 H 0.05 2.77 7.92 -2.91 -0.02 2.75 16 9 C 0.02 1.11 1.98 -52.93 -0.10 1.01 16 10 C 0.10 4.99 5.59 71.98 0.40 5.39 16 11 O -0.39 -16.52 9.36 -148.98 -1.39 -17.91 16 12 C 0.03 0.98 4.61 71.98 0.33 1.31 16 13 C 0.14 3.87 0.59 3.07 0.00 3.87 16 14 N -0.82 -23.18 4.49 -153.37 -0.69 -23.87 16 15 C -0.09 -2.58 4.58 31.32 0.14 -2.44 16 16 C -0.10 -2.35 5.31 30.14 0.16 -2.19 16 17 C -0.13 -2.81 5.61 30.20 0.17 -2.64 16 18 C -0.10 -2.01 5.26 28.74 0.15 -1.86 16 19 C -0.11 -2.32 5.17 28.73 0.15 -2.17 16 20 C -0.10 -2.41 5.04 30.19 0.15 -2.26 16 21 C -0.20 -9.00 9.88 30.60 0.30 -8.70 16 22 C -0.18 -7.95 9.94 30.60 0.30 -7.65 16 23 H 0.26 13.87 8.32 -92.70 -0.77 13.10 16 24 H 0.01 0.54 7.95 -2.39 -0.02 0.53 16 25 H 0.07 3.74 5.44 -2.39 -0.01 3.73 16 26 H 0.04 1.33 8.10 -2.39 -0.02 1.31 16 27 H 0.03 1.06 8.00 -2.39 -0.02 1.04 16 28 H 0.34 11.12 8.23 -89.69 -0.74 10.39 16 29 H 0.33 9.51 8.28 -89.69 -0.74 8.77 16 30 H 0.05 1.48 7.95 -2.39 -0.02 1.46 16 31 H 0.05 1.53 7.86 -2.38 -0.02 1.51 16 32 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.06 1.26 6.64 -2.39 -0.02 1.24 16 34 H 0.09 2.28 5.57 -2.39 -0.01 2.26 16 35 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.05 0.97 7.47 -2.38 -0.02 0.95 16 38 H 0.08 1.90 5.68 -2.38 -0.01 1.88 16 39 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.06 1.36 7.62 -2.38 -0.02 1.34 16 41 H 0.07 1.59 7.00 -2.39 -0.02 1.57 16 42 H 0.08 3.25 8.08 -2.39 -0.02 3.23 16 43 H 0.07 3.41 8.14 -2.39 -0.02 3.40 16 44 H 0.08 3.31 8.14 -2.39 -0.02 3.29 16 45 H 0.08 3.40 8.14 -2.39 -0.02 3.38 16 Total: -1.00 -55.96 336.58 2.49 -53.47 By element: Atomic # 1 Polarization: 37.27 SS G_CDS: -0.51 Total: 36.76 kcal Atomic # 6 Polarization: -46.55 SS G_CDS: 2.82 Total: -43.73 kcal Atomic # 7 Polarization: -72.87 SS G_CDS: -0.45 Total: -73.32 kcal Atomic # 8 Polarization: -16.52 SS G_CDS: -1.39 Total: -17.91 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Total: -55.96 2.49 -53.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088255931.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.367 kcal (2) G-P(sol) polarization free energy of solvation -55.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds