Wall clock time and date at job start Mon Mar 30 2020 06:33:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46499 * 109.47131 * 2 1 4 4 C 1.36940 * 120.00110 * 264.66920 * 3 2 1 5 5 H 1.08002 * 119.99844 * 191.72855 * 4 3 2 6 6 C 1.38811 * 119.99899 * 11.72369 * 4 3 2 7 7 N 1.31614 * 120.00191 * 17.46918 * 6 4 3 8 8 Si 1.86802 * 119.99903 * 197.46370 * 6 4 3 9 9 H 1.48504 * 109.46903 * 84.97589 * 8 6 4 10 10 H 1.48500 * 109.47188 * 204.97783 * 8 6 4 11 11 H 1.48497 * 109.47231 * 324.97735 * 8 6 4 12 12 C 1.46496 * 120.00015 * 84.66568 * 3 2 1 13 13 C 1.50696 * 109.47410 * 270.00085 * 12 3 2 14 14 C 1.33391 * 125.20260 * 89.99729 * 13 12 3 15 15 C 1.38427 * 114.92315 * 179.97438 * 14 13 12 16 16 C 1.33390 * 114.91845 * 0.02562 * 15 14 13 17 17 C 1.50701 * 125.20164 * 180.02562 * 16 15 14 18 18 C 1.53001 * 109.46812 * 59.99976 * 17 16 15 19 19 C 1.52995 * 109.47115 * 179.97438 * 17 16 15 20 20 C 1.52991 * 109.47432 * 299.99906 * 17 16 15 21 21 S 1.75885 * 109.59501 * 359.97438 * 16 15 14 22 22 H 1.08999 * 109.46888 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46506 * 299.99538 * 1 2 3 24 24 H 1.08989 * 109.47294 * 59.99527 * 1 2 3 25 25 H 1.09001 * 109.46999 * 240.00496 * 2 1 3 26 26 H 1.08994 * 109.47631 * 120.00150 * 2 1 3 27 27 H 0.97004 * 120.00499 * 180.02562 * 7 6 4 28 28 H 1.09001 * 109.47610 * 150.00076 * 12 3 2 29 29 H 1.09005 * 109.47117 * 29.99771 * 12 3 2 30 30 H 1.07999 * 122.53953 * 0.25230 * 14 13 12 31 31 H 1.08002 * 122.54284 * 179.97438 * 15 14 13 32 32 H 1.09000 * 109.47218 * 60.00156 * 18 17 16 33 33 H 1.09006 * 109.47089 * 179.97438 * 18 17 16 34 34 H 1.08997 * 109.47152 * 299.99614 * 18 17 16 35 35 H 1.09000 * 109.46870 * 60.00337 * 19 17 16 36 36 H 1.08997 * 109.47473 * 180.02562 * 19 17 16 37 37 H 1.09000 * 109.47465 * 300.00180 * 19 17 16 38 38 H 1.09007 * 109.47055 * 60.00011 * 20 17 16 39 39 H 1.08995 * 109.47647 * 179.97438 * 20 17 16 40 40 H 1.09000 * 109.47165 * 300.00038 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3505 1.9900 -1.1808 5 1 2.8842 2.9289 -1.1728 6 6 2.0013 1.4004 -2.3879 7 7 1.0759 0.4651 -2.4201 8 14 2.8447 1.9345 -3.9668 9 1 4.1144 1.1816 -4.1288 10 1 1.9539 1.6572 -5.1221 11 1 3.1363 3.3892 -3.9046 12 6 2.1513 2.1111 1.2632 13 6 0.8632 2.8329 1.5643 14 6 -0.1565 2.3282 2.2606 15 6 -1.2383 3.1787 2.4102 16 6 -1.0974 4.3739 1.8351 17 6 -2.1271 5.4742 1.8544 18 6 -2.4175 5.8753 3.3021 19 6 -1.5935 6.6856 1.0873 20 6 -3.4153 4.9789 1.1943 21 16 0.4745 4.4700 1.0519 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3632 0.5138 0.8901 24 1 -0.3633 0.5138 -0.8898 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 0.8320 0.0527 -3.2636 28 1 2.9626 2.8345 1.1813 29 1 2.3707 1.4087 2.0674 30 1 -0.1376 1.3331 2.6798 31 1 -2.1294 2.8957 2.9510 32 1 -1.4997 6.2283 3.7724 33 1 -3.1619 6.6715 3.3161 34 1 -2.7975 5.0125 3.8490 35 1 -1.3863 6.4000 0.0560 36 1 -2.3379 7.4815 1.1017 37 1 -0.6758 7.0384 1.5580 38 1 -3.7953 4.1159 1.7412 39 1 -4.1601 5.7744 1.2087 40 1 -3.2083 4.6930 0.1630 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092398988.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:34 Heat of formation + Delta-G solvation = 43.866268 kcal Electronic energy + Delta-G solvation = -18870.490273 eV Core-core repulsion = 16198.441649 eV Total energy + Delta-G solvation = -2672.048625 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -38.24751 -36.60159 -35.05616 -31.53606 -29.80102 -28.31474 -27.27747 -27.15524 -25.34622 -23.43990 -22.15678 -20.30902 -20.02295 -17.82079 -16.57239 -16.19611 -15.03433 -14.87561 -14.17788 -13.81427 -13.71893 -13.59450 -13.20622 -12.61976 -12.44398 -12.39385 -11.98615 -11.71509 -11.59000 -11.54995 -11.35849 -11.27693 -10.93369 -10.86907 -10.75450 -10.71457 -10.40749 -10.33395 -9.94456 -9.82047 -9.67834 -9.39246 -8.40283 -7.71525 -7.64134 -6.87656 -5.72913 -3.10996 1.75602 2.38660 2.83830 3.38275 3.43695 3.45630 3.49349 4.49914 4.81078 5.00458 5.08603 5.36851 5.48350 5.60501 5.64057 5.68037 5.77773 5.83699 5.92546 5.94394 6.05675 6.10879 6.12801 6.25870 6.35036 6.41338 6.42454 6.51390 6.66751 6.89566 6.99279 7.07215 7.16504 7.26174 7.29915 7.66045 7.84030 8.21613 8.37711 9.24190 9.83126 10.28189 11.26894 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.022496 B = 0.006225 C = 0.005682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.384094 B = 4496.681636 C = 4926.342192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.168 3.832 3 N -0.581 5.581 4 C -0.242 4.242 5 H 0.073 0.927 6 C -0.003 4.003 7 N -0.896 5.896 8 Si 0.905 3.095 9 H -0.288 1.288 10 H -0.292 1.292 11 H -0.281 1.281 12 C 0.206 3.794 13 C -0.150 4.150 14 C -0.163 4.163 15 C -0.127 4.127 16 C -0.197 4.197 17 C 0.009 3.991 18 C -0.132 4.132 19 C -0.148 4.148 20 C -0.135 4.135 21 S 0.094 5.906 22 H 0.013 0.987 23 H 0.024 0.976 24 H 0.088 0.912 25 H 0.091 0.909 26 H 0.000 1.000 27 H 0.252 0.748 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.126 0.874 31 H 0.121 0.879 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.055 0.945 35 H 0.061 0.939 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.055 0.945 39 H 0.054 0.946 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.380 7.758 9.461 13.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.043 3.957 3 N -0.300 5.300 4 C -0.372 4.372 5 H 0.091 0.909 6 C -0.201 4.201 7 N -0.542 5.542 8 Si 0.735 3.265 9 H -0.215 1.215 10 H -0.218 1.218 11 H -0.207 1.207 12 C 0.076 3.924 13 C -0.271 4.271 14 C -0.192 4.192 15 C -0.158 4.158 16 C -0.315 4.315 17 C 0.007 3.993 18 C -0.191 4.191 19 C -0.205 4.205 20 C -0.193 4.193 21 S 0.359 5.641 22 H 0.032 0.968 23 H 0.043 0.957 24 H 0.107 0.893 25 H 0.109 0.891 26 H 0.019 0.981 27 H 0.062 0.938 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.143 0.857 31 H 0.139 0.861 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.606 8.724 8.439 12.982 hybrid contribution -0.709 -0.973 -0.177 1.217 sum -5.315 7.751 8.263 12.514 Atomic orbital electron populations 1.22456 0.99080 0.97938 1.01942 1.20887 0.92772 0.83905 0.98097 1.44501 1.74515 1.09773 1.01233 1.19326 1.28594 1.05871 0.83403 0.90931 1.24837 0.97931 0.99636 0.97655 1.70145 1.29808 1.29567 1.24685 0.86250 0.79002 0.78140 0.83100 1.21488 1.21813 1.20659 1.19569 0.89846 0.93387 0.89596 1.26193 1.04416 0.96267 1.00269 1.19776 0.93864 1.00669 1.04932 1.19807 0.99531 0.93473 1.02959 1.24238 1.00098 0.99767 1.07381 1.18948 0.92601 0.91946 0.95836 1.21860 1.01266 1.00964 0.94974 1.21943 1.00935 0.96969 1.00694 1.21875 0.95616 1.00694 1.01120 1.84076 1.10813 1.13917 1.55305 0.96762 0.95749 0.89289 0.89079 0.98150 0.93790 0.92774 0.92309 0.85664 0.86112 0.92577 0.92693 0.92557 0.92016 0.92281 0.92286 0.92556 0.92724 0.92300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.70 9.54 37.16 0.35 -3.34 16 2 C 0.17 4.09 5.64 -4.04 -0.02 4.06 16 3 N -0.58 -14.26 2.52 -174.61 -0.44 -14.70 16 4 C -0.24 -6.47 9.74 -15.06 -0.15 -6.62 16 5 H 0.07 1.92 7.87 -52.49 -0.41 1.51 16 6 C 0.00 -0.09 5.05 -17.43 -0.09 -0.18 16 7 N -0.90 -25.01 8.16 55.49 0.45 -24.56 16 8 Si 0.90 21.64 29.59 -169.99 -5.03 16.61 16 9 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 10 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 C 0.21 4.28 6.20 -5.20 -0.03 4.25 16 13 C -0.15 -2.99 5.82 -36.00 -0.21 -3.20 16 14 C -0.16 -3.03 7.98 -41.21 -0.33 -3.36 16 15 C -0.13 -2.15 9.31 -41.21 -0.38 -2.53 16 16 C -0.20 -3.25 5.13 -36.00 -0.18 -3.43 16 17 C 0.01 0.12 0.91 -155.67 -0.14 -0.03 16 18 C -0.13 -1.49 8.33 37.16 0.31 -1.18 16 19 C -0.15 -1.86 7.56 37.16 0.28 -1.58 16 20 C -0.13 -1.71 8.34 37.15 0.31 -1.40 16 21 S 0.09 1.74 21.82 -107.50 -2.35 -0.61 16 22 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 23 H 0.02 0.54 4.86 -51.93 -0.25 0.28 16 24 H 0.09 2.44 6.19 -51.93 -0.32 2.12 16 25 H 0.09 2.45 5.88 -51.93 -0.31 2.15 16 26 H 0.00 0.01 7.97 -51.93 -0.41 -0.41 16 27 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 28 H 0.05 1.09 8.02 -51.93 -0.42 0.68 16 29 H 0.06 1.12 7.94 -51.93 -0.41 0.71 16 30 H 0.13 2.25 7.41 -52.49 -0.39 1.86 16 31 H 0.12 1.80 8.01 -52.49 -0.42 1.38 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.62 7.94 -51.93 -0.41 0.21 16 35 H 0.06 0.85 7.96 -51.93 -0.41 0.44 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.74 7.96 -51.93 -0.41 0.32 16 38 H 0.06 0.70 7.94 -51.93 -0.41 0.29 16 39 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 326.08 15.07 4.91 4.91 Total: -1.00 -27.83 326.08 -9.40 -37.23 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -6.67 Total: -0.36 kcal Atomic # 6 Polarization: -18.24 SS G_CDS: -0.28 Total: -18.52 kcal Atomic # 7 Polarization: -39.27 SS G_CDS: 0.01 Total: -39.26 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.03 Total: 16.61 kcal Atomic # 16 Polarization: 1.74 SS G_CDS: -2.35 Total: -0.61 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -27.83 -9.40 -37.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092398988.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.094 kcal (2) G-P(sol) polarization free energy of solvation -27.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds