Wall clock time and date at job start Mon Mar 30 2020 06:33:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46499 * 109.47131 * 2 1 4 4 C 1.36940 * 120.00110 * 264.66920 * 3 2 1 5 5 H 1.08002 * 119.99844 * 191.72855 * 4 3 2 6 6 C 1.38811 * 119.99899 * 11.72369 * 4 3 2 7 7 N 1.31614 * 120.00191 * 17.46918 * 6 4 3 8 8 Si 1.86802 * 119.99903 * 197.46370 * 6 4 3 9 9 H 1.48504 * 109.46903 * 84.97589 * 8 6 4 10 10 H 1.48500 * 109.47188 * 204.97783 * 8 6 4 11 11 H 1.48497 * 109.47231 * 324.97735 * 8 6 4 12 12 C 1.46496 * 120.00015 * 84.66568 * 3 2 1 13 13 C 1.50696 * 109.47410 * 270.00085 * 12 3 2 14 14 C 1.33391 * 125.20260 * 89.99729 * 13 12 3 15 15 C 1.38427 * 114.92315 * 179.97438 * 14 13 12 16 16 C 1.33390 * 114.91845 * 0.02562 * 15 14 13 17 17 C 1.50701 * 125.20164 * 180.02562 * 16 15 14 18 18 C 1.53001 * 109.46812 * 59.99976 * 17 16 15 19 19 C 1.52995 * 109.47115 * 179.97438 * 17 16 15 20 20 C 1.52991 * 109.47432 * 299.99906 * 17 16 15 21 21 S 1.75885 * 109.59501 * 359.97438 * 16 15 14 22 22 H 1.08999 * 109.46888 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46506 * 299.99538 * 1 2 3 24 24 H 1.08989 * 109.47294 * 59.99527 * 1 2 3 25 25 H 1.09001 * 109.46999 * 240.00496 * 2 1 3 26 26 H 1.08994 * 109.47631 * 120.00150 * 2 1 3 27 27 H 0.97004 * 120.00499 * 180.02562 * 7 6 4 28 28 H 1.09001 * 109.47610 * 150.00076 * 12 3 2 29 29 H 1.09005 * 109.47117 * 29.99771 * 12 3 2 30 30 H 1.07999 * 122.53953 * 0.25230 * 14 13 12 31 31 H 1.08002 * 122.54284 * 179.97438 * 15 14 13 32 32 H 1.09000 * 109.47218 * 60.00156 * 18 17 16 33 33 H 1.09006 * 109.47089 * 179.97438 * 18 17 16 34 34 H 1.08997 * 109.47152 * 299.99614 * 18 17 16 35 35 H 1.09000 * 109.46870 * 60.00337 * 19 17 16 36 36 H 1.08997 * 109.47473 * 180.02562 * 19 17 16 37 37 H 1.09000 * 109.47465 * 300.00180 * 19 17 16 38 38 H 1.09007 * 109.47055 * 60.00011 * 20 17 16 39 39 H 1.08995 * 109.47647 * 179.97438 * 20 17 16 40 40 H 1.09000 * 109.47165 * 300.00038 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3505 1.9900 -1.1808 5 1 2.8842 2.9289 -1.1728 6 6 2.0013 1.4004 -2.3879 7 7 1.0759 0.4651 -2.4201 8 14 2.8447 1.9345 -3.9668 9 1 4.1144 1.1816 -4.1288 10 1 1.9539 1.6572 -5.1221 11 1 3.1363 3.3892 -3.9046 12 6 2.1513 2.1111 1.2632 13 6 0.8632 2.8329 1.5643 14 6 -0.1565 2.3282 2.2606 15 6 -1.2383 3.1787 2.4102 16 6 -1.0974 4.3739 1.8351 17 6 -2.1271 5.4742 1.8544 18 6 -2.4175 5.8753 3.3021 19 6 -1.5935 6.6856 1.0873 20 6 -3.4153 4.9789 1.1943 21 16 0.4745 4.4700 1.0519 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3632 0.5138 0.8901 24 1 -0.3633 0.5138 -0.8898 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 0.8320 0.0527 -3.2636 28 1 2.9626 2.8345 1.1813 29 1 2.3707 1.4087 2.0674 30 1 -0.1376 1.3331 2.6798 31 1 -2.1294 2.8957 2.9510 32 1 -1.4997 6.2283 3.7724 33 1 -3.1619 6.6715 3.3161 34 1 -2.7975 5.0125 3.8490 35 1 -1.3863 6.4000 0.0560 36 1 -2.3379 7.4815 1.1017 37 1 -0.6758 7.0384 1.5580 38 1 -3.7953 4.1159 1.7412 39 1 -4.1601 5.7744 1.2087 40 1 -3.2083 4.6930 0.1630 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092398988.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:34 Heat of formation + Delta-G solvation = 31.766688 kcal Electronic energy + Delta-G solvation = -18871.014950 eV Core-core repulsion = 16198.441649 eV Total energy + Delta-G solvation = -2672.573302 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.54463 -38.19757 -36.54186 -33.41395 -31.63352 -29.98463 -28.26564 -28.08341 -27.00731 -25.20220 -23.75542 -22.17714 -21.26208 -19.24885 -18.44808 -17.56785 -16.86426 -16.29586 -15.58378 -15.33686 -15.17639 -14.87484 -14.74790 -14.17731 -13.86948 -13.60277 -13.47118 -13.35105 -12.96698 -12.89694 -12.74314 -12.68100 -12.56683 -12.42825 -12.28516 -12.00187 -11.90793 -11.77714 -11.71017 -11.51106 -11.34049 -11.21135 -10.38995 -9.17591 -9.12516 -8.80061 -7.75441 -5.15484 0.33419 0.96637 1.39619 1.47329 1.48983 1.55584 2.04388 2.54635 3.32957 3.71578 3.78492 3.99735 4.08066 4.28659 4.41013 4.52745 4.70746 4.74967 4.78287 4.82221 4.84456 4.88126 4.90188 5.01647 5.02336 5.11756 5.13035 5.23673 5.25586 5.32936 5.35049 5.45919 5.52652 5.58556 5.65084 5.85150 5.87018 6.22282 6.38241 7.22720 7.90373 8.30830 9.22591 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.022496 B = 0.006225 C = 0.005682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.384094 B = 4496.681636 C = 4926.342192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.172 3.828 3 N -0.596 5.596 4 C -0.247 4.247 5 H 0.068 0.932 6 C -0.051 4.051 7 N -0.918 5.918 8 Si 0.959 3.041 9 H -0.286 1.286 10 H -0.298 1.298 11 H -0.277 1.277 12 C 0.207 3.793 13 C -0.180 4.180 14 C -0.153 4.153 15 C -0.142 4.142 16 C -0.177 4.177 17 C 0.004 3.996 18 C -0.128 4.128 19 C -0.147 4.147 20 C -0.133 4.133 21 S 0.067 5.933 22 H 0.024 0.976 23 H 0.036 0.964 24 H 0.052 0.948 25 H 0.061 0.939 26 H 0.022 0.978 27 H 0.244 0.756 28 H 0.053 0.947 29 H 0.076 0.924 30 H 0.133 0.867 31 H 0.147 0.853 32 H 0.052 0.948 33 H 0.078 0.922 34 H 0.060 0.940 35 H 0.042 0.958 36 H 0.085 0.915 37 H 0.056 0.944 38 H 0.058 0.942 39 H 0.081 0.919 40 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.666 8.926 10.997 15.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.047 3.953 3 N -0.317 5.317 4 C -0.377 4.377 5 H 0.086 0.914 6 C -0.246 4.246 7 N -0.565 5.565 8 Si 0.789 3.211 9 H -0.213 1.213 10 H -0.225 1.225 11 H -0.202 1.202 12 C 0.079 3.921 13 C -0.300 4.300 14 C -0.184 4.184 15 C -0.172 4.172 16 C -0.294 4.294 17 C 0.002 3.998 18 C -0.186 4.186 19 C -0.205 4.205 20 C -0.191 4.191 21 S 0.332 5.668 22 H 0.043 0.957 23 H 0.055 0.945 24 H 0.071 0.929 25 H 0.079 0.921 26 H 0.040 0.960 27 H 0.054 0.946 28 H 0.072 0.928 29 H 0.094 0.906 30 H 0.151 0.849 31 H 0.164 0.836 32 H 0.071 0.929 33 H 0.097 0.903 34 H 0.079 0.921 35 H 0.061 0.939 36 H 0.104 0.896 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.100 0.900 40 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -5.879 9.913 10.005 15.261 hybrid contribution -0.361 -1.243 -0.509 1.391 sum -6.240 8.669 9.495 14.292 Atomic orbital electron populations 1.22246 0.98799 0.98192 1.00586 1.20735 0.92940 0.84057 0.97591 1.44513 1.75189 1.10232 1.01734 1.19457 1.28269 1.05483 0.84513 0.91442 1.25436 0.98804 1.00385 0.99980 1.70319 1.30910 1.30780 1.24491 0.85398 0.77871 0.77852 0.80020 1.21324 1.22481 1.20211 1.19569 0.90381 0.93664 0.88532 1.25901 1.04293 0.97360 1.02472 1.20024 0.93737 1.01010 1.03594 1.20043 1.00080 0.93330 1.03720 1.24745 0.99027 1.00612 1.05058 1.19168 0.91860 0.91064 0.97732 1.21831 1.01889 1.01949 0.92914 1.21947 1.01704 0.97482 0.99341 1.21869 0.95775 1.01821 0.99634 1.84141 1.12976 1.13676 1.56026 0.95658 0.94536 0.92921 0.92066 0.95980 0.94623 0.92835 0.90576 0.84942 0.83579 0.92905 0.90269 0.92130 0.93903 0.89614 0.92534 0.92242 0.90020 0.94474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.60 9.54 71.98 0.69 -5.92 16 2 C 0.17 8.35 5.64 86.38 0.49 8.84 16 3 N -0.60 -29.39 2.52 -706.35 -1.78 -31.17 16 4 C -0.25 -13.38 9.74 84.03 0.82 -12.56 16 5 H 0.07 3.63 7.87 -2.91 -0.02 3.61 16 6 C -0.05 -2.83 5.05 84.86 0.43 -2.41 16 7 N -0.92 -52.49 8.16 21.65 0.18 -52.31 16 8 Si 0.96 45.32 29.59 68.60 2.03 47.35 16 9 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 10 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 11 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 12 C 0.21 8.52 6.20 85.63 0.53 9.06 16 13 C -0.18 -7.04 5.82 24.59 0.14 -6.90 16 14 C -0.15 -5.46 7.98 21.22 0.17 -5.30 16 15 C -0.14 -4.48 9.31 21.22 0.20 -4.28 16 16 C -0.18 -5.51 5.13 24.59 0.13 -5.38 16 17 C 0.00 0.09 0.91 -52.93 -0.05 0.05 16 18 C -0.13 -2.40 8.33 71.98 0.60 -1.80 16 19 C -0.15 -3.38 7.56 71.98 0.54 -2.83 16 20 C -0.13 -2.99 8.34 71.98 0.60 -2.39 16 21 S 0.07 2.45 21.82 -56.49 -1.23 1.21 16 22 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 23 H 0.04 1.59 4.86 -2.38 -0.01 1.58 16 24 H 0.05 2.91 6.19 -2.39 -0.01 2.90 16 25 H 0.06 3.36 5.88 -2.39 -0.01 3.34 16 26 H 0.02 0.96 7.97 -2.39 -0.02 0.94 16 27 H 0.24 13.77 8.31 -92.71 -0.77 12.99 16 28 H 0.05 2.17 8.02 -2.39 -0.02 2.15 16 29 H 0.08 2.81 7.94 -2.38 -0.02 2.79 16 30 H 0.13 4.48 7.41 -2.91 -0.02 4.46 16 31 H 0.15 3.87 8.01 -2.91 -0.02 3.85 16 32 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 34 H 0.06 1.10 7.94 -2.39 -0.02 1.08 16 35 H 0.04 1.14 7.96 -2.39 -0.02 1.12 16 36 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.06 1.31 7.96 -2.39 -0.02 1.29 16 38 H 0.06 1.29 7.94 -2.38 -0.02 1.27 16 39 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -59.98 326.08 5.47 -54.51 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: 0.99 Total: 12.23 kcal Atomic # 6 Polarization: -37.10 SS G_CDS: 5.28 Total: -31.82 kcal Atomic # 7 Polarization: -81.88 SS G_CDS: -1.60 Total: -83.48 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Atomic # 16 Polarization: 2.45 SS G_CDS: -1.23 Total: 1.21 kcal Total: -59.98 5.47 -54.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092398988.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.277 kcal (2) G-P(sol) polarization free energy of solvation -59.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds