Wall clock time and date at job start Mon Mar 30 2020 07:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86807 * 120.00025 * 2 1 4 4 H 1.48500 * 109.46750 * 239.99977 * 3 2 1 5 5 H 1.48505 * 109.46885 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.46924 * 119.99607 * 3 2 1 7 7 C 1.37871 * 120.00142 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00413 * 161.37261 * 7 2 1 9 9 C 1.50706 * 119.99721 * 341.37041 * 7 2 1 10 10 C 1.52992 * 115.56204 * 322.60049 * 9 7 2 11 11 N 1.46904 * 109.47538 * 268.70319 * 10 9 7 12 12 C 1.46891 * 111.00460 * 182.45020 * 11 10 9 13 13 C 1.52997 * 109.47293 * 185.25417 * 12 11 10 14 14 C 1.53008 * 109.47246 * 63.66201 * 13 12 11 15 15 O 1.42898 * 109.46872 * 294.42307 * 14 13 12 16 16 C 1.52998 * 109.47364 * 303.66451 * 13 12 11 17 17 C 1.53008 * 109.46735 * 300.00062 * 16 13 12 18 18 C 1.53002 * 109.46941 * 299.99838 * 17 16 13 19 19 C 1.52998 * 109.47415 * 60.00124 * 18 17 16 20 20 C 1.53002 * 109.47045 * 300.00175 * 19 18 17 21 21 C 1.53007 * 117.49622 * 176.91396 * 9 7 2 22 22 C 1.53002 * 60.02907 * 252.49758 * 21 9 7 23 23 H 0.97000 * 120.00069 * 5.04337 * 1 2 3 24 24 H 1.09000 * 109.47213 * 28.70165 * 10 9 7 25 25 H 1.08997 * 109.47317 * 148.70750 * 10 9 7 26 26 H 1.00904 * 110.99954 * 306.40910 * 11 10 9 27 27 H 1.09004 * 109.47059 * 305.25278 * 12 11 10 28 28 H 1.09003 * 109.47386 * 65.25368 * 12 11 10 29 29 H 1.08996 * 109.46967 * 54.41857 * 14 13 12 30 30 H 1.08997 * 109.47130 * 174.41957 * 14 13 12 31 31 H 0.96697 * 114.00099 * 180.02562 * 15 14 13 32 32 H 1.08996 * 109.47288 * 59.99108 * 16 13 12 33 33 H 1.08998 * 109.47650 * 180.02562 * 16 13 12 34 34 H 1.08994 * 109.46965 * 179.97438 * 17 16 13 35 35 H 1.08996 * 109.47268 * 59.99739 * 17 16 13 36 36 H 1.09005 * 109.47082 * 300.00222 * 18 17 16 37 37 H 1.08997 * 109.47337 * 180.02562 * 18 17 16 38 38 H 1.08993 * 109.47501 * 180.02562 * 19 18 17 39 39 H 1.08998 * 109.47279 * 59.99422 * 19 18 17 40 40 H 1.09005 * 109.47117 * 299.99697 * 20 19 18 41 41 H 1.08994 * 109.47367 * 180.02562 * 20 19 18 42 42 H 1.09001 * 117.49694 * 359.97438 * 21 9 7 43 43 H 1.08998 * 117.49714 * 145.00161 * 21 9 7 44 44 H 1.09004 * 117.49569 * 107.50136 * 22 21 9 45 45 H 1.08997 * 117.50159 * 252.51788 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0420 -1.2187 -0.2982 9 6 1.3101 -2.4647 0.4180 10 6 0.3133 -2.3244 1.5701 11 7 1.0014 -2.5656 2.8454 12 6 0.0616 -2.4963 3.9721 13 6 0.8325 -2.6215 5.2877 14 6 1.7794 -1.4293 5.4394 15 8 2.7807 -1.4839 4.4213 16 6 1.6431 -3.9191 5.2825 17 6 0.6961 -5.1113 5.1309 18 6 -0.2905 -5.1309 6.3002 19 6 -1.1010 -3.8332 6.3055 20 6 -0.1541 -2.6411 6.4571 21 6 2.1074 -3.7676 0.3284 22 6 0.9874 -3.4862 -0.6753 23 1 -0.4850 0.8368 -0.0738 24 1 -0.1053 -1.3180 1.5678 25 1 -0.4890 -3.0519 1.4470 26 1 1.4864 -3.4503 2.8329 27 1 -0.4643 -1.5418 3.9485 28 1 -0.6593 -3.3103 3.8946 29 1 1.2144 -0.5021 5.3439 30 1 2.2552 -1.4655 6.4194 31 1 3.4176 -0.7571 4.4567 32 1 2.3458 -3.9052 4.4495 33 1 2.1919 -4.0085 6.2200 34 1 1.2735 -6.0357 5.1267 35 1 0.1469 -5.0221 4.1936 36 1 0.2588 -5.2200 7.2375 37 1 -0.9648 -5.9804 6.1925 38 1 -1.8035 -3.8470 7.1388 39 1 -1.6502 -3.7440 5.3682 40 1 0.3952 -2.7302 7.3944 41 1 -0.7315 -1.7166 6.4613 42 1 3.1339 -3.7056 -0.0330 43 1 1.9218 -4.5246 1.0903 44 1 1.2773 -3.2391 -1.6967 45 1 0.0650 -4.0579 -0.5735 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125589103.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:34:18 Heat of formation + Delta-G solvation = -36.980171 kcal Electronic energy + Delta-G solvation = -22250.291557 eV Core-core repulsion = 19267.817391 eV Total energy + Delta-G solvation = -2982.474166 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.64455 -36.78802 -35.72780 -33.56548 -32.04082 -31.28930 -30.48595 -26.11749 -25.31146 -25.16414 -22.95440 -22.25308 -20.95422 -20.80754 -18.80353 -18.06305 -16.64144 -16.11637 -15.53454 -14.87309 -14.66876 -14.56559 -14.32960 -13.80793 -13.37861 -13.08216 -13.02962 -12.77185 -12.49773 -12.04909 -11.89740 -11.74039 -11.43857 -11.08306 -11.00026 -10.92992 -10.79093 -10.63203 -10.47653 -10.35853 -10.14140 -10.00710 -9.84805 -9.73557 -9.28540 -9.01911 -8.94090 -8.55925 -7.89023 -7.03950 -5.94471 -3.88391 3.37749 3.42191 3.47948 4.49722 4.57800 4.72253 4.86436 5.05368 5.10893 5.20676 5.31305 5.41298 5.55411 5.61882 5.64835 5.70816 5.73830 5.77541 5.80757 5.91607 5.99298 6.09218 6.15465 6.20523 6.24128 6.25443 6.30709 6.40187 6.54313 6.57542 6.65719 6.71441 6.77548 6.80535 6.93063 7.08667 7.24842 7.45861 7.81429 8.16885 8.31640 8.34656 8.50836 8.71159 9.03645 9.66406 11.10161 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.020794 B = 0.006379 C = 0.005651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.200731 B = 4388.296392 C = 4953.624392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.074 3.926 3 Si 0.890 3.110 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.275 1.275 7 C -0.472 4.472 8 H 0.057 0.943 9 C 0.071 3.929 10 C 0.092 3.908 11 N -0.652 5.652 12 C 0.074 3.926 13 C -0.052 4.052 14 C 0.100 3.900 15 O -0.529 6.529 16 C -0.103 4.103 17 C -0.124 4.124 18 C -0.116 4.116 19 C -0.120 4.120 20 C -0.107 4.107 21 C -0.207 4.207 22 C -0.210 4.210 23 H 0.260 0.740 24 H 0.115 0.885 25 H -0.015 1.015 26 H 0.324 0.676 27 H 0.060 0.940 28 H 0.018 0.982 29 H 0.035 0.965 30 H 0.024 0.976 31 H 0.363 0.637 32 H 0.082 0.918 33 H 0.052 0.948 34 H 0.057 0.943 35 H 0.062 0.938 36 H 0.057 0.943 37 H 0.055 0.945 38 H 0.057 0.943 39 H 0.067 0.933 40 H 0.060 0.940 41 H 0.061 0.939 42 H 0.073 0.927 43 H 0.061 0.939 44 H 0.075 0.925 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.389 -5.861 13.782 14.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.128 4.128 3 Si 0.718 3.282 4 H -0.206 1.206 5 H -0.216 1.216 6 H -0.200 1.200 7 C -0.509 4.509 8 H 0.075 0.925 9 C 0.070 3.930 10 C -0.036 4.036 11 N -0.283 5.283 12 C -0.055 4.055 13 C -0.053 4.053 14 C 0.021 3.979 15 O -0.331 6.331 16 C -0.140 4.140 17 C -0.162 4.162 18 C -0.154 4.154 19 C -0.158 4.158 20 C -0.145 4.145 21 C -0.245 4.245 22 C -0.249 4.249 23 H 0.070 0.930 24 H 0.133 0.867 25 H 0.003 0.997 26 H 0.142 0.858 27 H 0.078 0.922 28 H 0.036 0.964 29 H 0.053 0.947 30 H 0.042 0.958 31 H 0.207 0.793 32 H 0.100 0.900 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.085 0.915 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.091 0.909 43 H 0.079 0.921 44 H 0.094 0.906 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.688 -5.607 13.739 14.855 hybrid contribution 0.165 0.470 0.003 0.498 sum -0.523 -5.137 13.742 14.680 Atomic orbital electron populations 1.69898 1.06140 1.26665 1.48992 1.24874 0.94574 0.98840 0.94475 0.86712 0.79826 0.83086 0.78614 1.20612 1.21635 1.20017 1.20397 0.96619 0.90211 1.43714 0.92515 1.18887 0.94356 0.87809 0.91936 1.21754 0.92691 1.02520 0.86640 1.60381 1.27897 1.38364 1.01650 1.21902 0.93459 0.99593 0.90590 1.20593 0.94623 0.94937 0.95131 1.21886 0.90042 0.96694 0.89287 1.86816 1.42243 1.50920 1.53080 1.21458 0.97644 0.92742 1.02190 1.21612 0.97653 0.98315 0.98598 1.21509 0.97940 0.97233 0.98686 1.21559 0.97717 0.94626 1.01883 1.21501 0.97159 0.98310 0.97548 1.22733 0.95832 1.03287 1.02611 1.23049 0.97206 1.08225 0.96398 0.93029 0.86741 0.99731 0.85752 0.92160 0.96370 0.94687 0.95767 0.79282 0.89990 0.92934 0.92450 0.91909 0.92405 0.92586 0.92418 0.91462 0.92153 0.92012 0.90866 0.92070 0.90643 0.92261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.95 11.15 55.43 0.62 -24.33 16 2 C 0.07 2.06 5.01 -17.82 -0.09 1.97 16 3 Si 0.89 21.45 29.58 -169.99 -5.03 16.42 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.47 -13.24 8.99 -34.44 -0.31 -13.55 16 8 H 0.06 1.60 7.88 -52.49 -0.41 1.19 16 9 C 0.07 1.81 2.00 -155.62 -0.31 1.50 16 10 C 0.09 2.23 5.48 -3.83 -0.02 2.21 16 11 N -0.65 -13.49 4.63 -113.79 -0.53 -14.02 16 12 C 0.07 1.30 3.94 -3.83 -0.02 1.29 16 13 C -0.05 -0.75 0.52 -154.51 -0.08 -0.83 16 14 C 0.10 1.46 5.92 37.16 0.22 1.68 16 15 O -0.53 -8.97 11.05 -35.23 -0.39 -9.36 16 16 C -0.10 -1.42 4.10 -26.73 -0.11 -1.53 16 17 C -0.12 -1.57 5.65 -26.73 -0.15 -1.72 16 18 C -0.12 -1.27 5.92 -26.73 -0.16 -1.43 16 19 C -0.12 -1.35 5.65 -26.73 -0.15 -1.50 16 20 C -0.11 -1.27 4.73 -26.73 -0.13 -1.40 16 21 C -0.21 -4.70 9.40 -26.73 -0.25 -4.95 16 22 C -0.21 -5.04 9.88 -26.69 -0.26 -5.31 16 23 H 0.26 7.06 8.32 -40.82 -0.34 6.72 16 24 H 0.11 3.13 5.38 -51.93 -0.28 2.85 16 25 H -0.02 -0.37 7.87 -51.93 -0.41 -0.78 16 26 H 0.32 6.55 5.53 -39.29 -0.22 6.33 16 27 H 0.06 1.14 8.13 -51.93 -0.42 0.72 16 28 H 0.02 0.31 4.82 -51.93 -0.25 0.06 16 29 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.36 4.98 9.12 45.56 0.42 5.40 16 32 H 0.08 1.32 6.05 -51.93 -0.31 1.01 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.89 6.51 -51.93 -0.34 0.55 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.84 6.35 -51.93 -0.33 0.51 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.07 1.65 8.14 -51.93 -0.42 1.22 16 43 H 0.06 1.27 7.34 -51.93 -0.38 0.89 16 44 H 0.07 1.83 8.14 -51.93 -0.42 1.41 16 45 H 0.06 1.35 8.03 -51.93 -0.42 0.93 16 LS Contribution 335.82 15.07 5.06 5.06 Total: -1.00 -29.10 335.82 -9.22 -38.32 By element: Atomic # 1 Polarization: 18.59 SS G_CDS: -7.14 Total: 11.45 kcal Atomic # 6 Polarization: -21.73 SS G_CDS: -1.82 Total: -23.55 kcal Atomic # 7 Polarization: -38.44 SS G_CDS: 0.09 Total: -38.35 kcal Atomic # 8 Polarization: -8.97 SS G_CDS: -0.39 Total: -9.36 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.03 Total: 16.42 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.10 -9.22 -38.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125589103.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.340 kcal (2) G-P(sol) polarization free energy of solvation -29.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds