Wall clock time and date at job start Mon Mar 30 2020 07:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86807 * 120.00025 * 2 1 4 4 H 1.48500 * 109.46750 * 239.99977 * 3 2 1 5 5 H 1.48505 * 109.46885 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.46924 * 119.99607 * 3 2 1 7 7 C 1.37871 * 120.00142 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00413 * 161.37261 * 7 2 1 9 9 C 1.50706 * 119.99721 * 341.37041 * 7 2 1 10 10 C 1.52992 * 115.56204 * 322.60049 * 9 7 2 11 11 N 1.46904 * 109.47538 * 268.70319 * 10 9 7 12 12 C 1.46891 * 111.00460 * 182.45020 * 11 10 9 13 13 C 1.52997 * 109.47293 * 185.25417 * 12 11 10 14 14 C 1.53008 * 109.47246 * 63.66201 * 13 12 11 15 15 O 1.42898 * 109.46872 * 294.42307 * 14 13 12 16 16 C 1.52998 * 109.47364 * 303.66451 * 13 12 11 17 17 C 1.53008 * 109.46735 * 300.00062 * 16 13 12 18 18 C 1.53002 * 109.46941 * 299.99838 * 17 16 13 19 19 C 1.52998 * 109.47415 * 60.00124 * 18 17 16 20 20 C 1.53002 * 109.47045 * 300.00175 * 19 18 17 21 21 C 1.53007 * 117.49622 * 176.91396 * 9 7 2 22 22 C 1.53002 * 60.02907 * 252.49758 * 21 9 7 23 23 H 0.97000 * 120.00069 * 5.04337 * 1 2 3 24 24 H 1.09000 * 109.47213 * 28.70165 * 10 9 7 25 25 H 1.08997 * 109.47317 * 148.70750 * 10 9 7 26 26 H 1.00904 * 110.99954 * 306.40910 * 11 10 9 27 27 H 1.09004 * 109.47059 * 305.25278 * 12 11 10 28 28 H 1.09003 * 109.47386 * 65.25368 * 12 11 10 29 29 H 1.08996 * 109.46967 * 54.41857 * 14 13 12 30 30 H 1.08997 * 109.47130 * 174.41957 * 14 13 12 31 31 H 0.96697 * 114.00099 * 180.02562 * 15 14 13 32 32 H 1.08996 * 109.47288 * 59.99108 * 16 13 12 33 33 H 1.08998 * 109.47650 * 180.02562 * 16 13 12 34 34 H 1.08994 * 109.46965 * 179.97438 * 17 16 13 35 35 H 1.08996 * 109.47268 * 59.99739 * 17 16 13 36 36 H 1.09005 * 109.47082 * 300.00222 * 18 17 16 37 37 H 1.08997 * 109.47337 * 180.02562 * 18 17 16 38 38 H 1.08993 * 109.47501 * 180.02562 * 19 18 17 39 39 H 1.08998 * 109.47279 * 59.99422 * 19 18 17 40 40 H 1.09005 * 109.47117 * 299.99697 * 20 19 18 41 41 H 1.08994 * 109.47367 * 180.02562 * 20 19 18 42 42 H 1.09001 * 117.49694 * 359.97438 * 21 9 7 43 43 H 1.08998 * 117.49714 * 145.00161 * 21 9 7 44 44 H 1.09004 * 117.49569 * 107.50136 * 22 21 9 45 45 H 1.08997 * 117.50159 * 252.51788 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0420 -1.2187 -0.2982 9 6 1.3101 -2.4647 0.4180 10 6 0.3133 -2.3244 1.5701 11 7 1.0014 -2.5656 2.8454 12 6 0.0616 -2.4963 3.9721 13 6 0.8325 -2.6215 5.2877 14 6 1.7794 -1.4293 5.4394 15 8 2.7807 -1.4839 4.4213 16 6 1.6431 -3.9191 5.2825 17 6 0.6961 -5.1113 5.1309 18 6 -0.2905 -5.1309 6.3002 19 6 -1.1010 -3.8332 6.3055 20 6 -0.1541 -2.6411 6.4571 21 6 2.1074 -3.7676 0.3284 22 6 0.9874 -3.4862 -0.6753 23 1 -0.4850 0.8368 -0.0738 24 1 -0.1053 -1.3180 1.5678 25 1 -0.4890 -3.0519 1.4470 26 1 1.4864 -3.4503 2.8329 27 1 -0.4643 -1.5418 3.9485 28 1 -0.6593 -3.3103 3.8946 29 1 1.2144 -0.5021 5.3439 30 1 2.2552 -1.4655 6.4194 31 1 3.4176 -0.7571 4.4567 32 1 2.3458 -3.9052 4.4495 33 1 2.1919 -4.0085 6.2200 34 1 1.2735 -6.0357 5.1267 35 1 0.1469 -5.0221 4.1936 36 1 0.2588 -5.2200 7.2375 37 1 -0.9648 -5.9804 6.1925 38 1 -1.8035 -3.8470 7.1388 39 1 -1.6502 -3.7440 5.3682 40 1 0.3952 -2.7302 7.3944 41 1 -0.7315 -1.7166 6.4613 42 1 3.1339 -3.7056 -0.0330 43 1 1.9218 -4.5246 1.0903 44 1 1.2773 -3.2391 -1.6967 45 1 0.0650 -4.0579 -0.5735 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000125589103.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:34:18 Heat of formation + Delta-G solvation = -54.721194 kcal Electronic energy + Delta-G solvation = -22251.060865 eV Core-core repulsion = 19267.817391 eV Total energy + Delta-G solvation = -2983.243474 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.79297 -38.65543 -36.91055 -35.09910 -34.15037 -32.45261 -31.53249 -27.95000 -27.07667 -26.35483 -24.50693 -23.38063 -22.79533 -21.82263 -20.77514 -19.32926 -18.04710 -17.85259 -16.75682 -16.55596 -16.37561 -15.85587 -15.55607 -15.33539 -14.87932 -14.64276 -14.36616 -14.15750 -13.68523 -13.49430 -13.13372 -13.09050 -12.91352 -12.86236 -12.72169 -12.37286 -12.28573 -12.08180 -12.03252 -11.92593 -11.83829 -11.28735 -10.97875 -10.96102 -10.82372 -10.74397 -10.53766 -10.46697 -9.91737 -8.71967 -8.05136 -6.05518 1.43269 1.47269 1.54653 2.47350 3.05176 3.42011 3.52825 3.75909 3.82964 4.00311 4.10235 4.16242 4.35681 4.40527 4.46540 4.55032 4.60605 4.62193 4.68757 4.69748 4.76792 4.80383 4.82500 4.85663 4.93338 4.94615 5.02656 5.13571 5.16656 5.19079 5.22631 5.30590 5.31701 5.39616 5.46819 5.55265 5.60927 5.65852 5.69123 6.13460 6.48049 6.60642 6.90376 6.96329 7.22607 7.51533 8.98359 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.020794 B = 0.006379 C = 0.005651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.200731 B = 4388.296392 C = 4953.624392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.033 3.967 3 Si 0.949 3.051 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.271 1.271 7 C -0.495 4.495 8 H 0.046 0.954 9 C 0.040 3.960 10 C 0.106 3.894 11 N -0.651 5.651 12 C 0.077 3.923 13 C -0.049 4.049 14 C 0.096 3.904 15 O -0.555 6.555 16 C -0.097 4.097 17 C -0.123 4.123 18 C -0.112 4.112 19 C -0.120 4.120 20 C -0.103 4.103 21 C -0.182 4.182 22 C -0.212 4.212 23 H 0.260 0.740 24 H 0.083 0.917 25 H -0.023 1.023 26 H 0.327 0.673 27 H 0.038 0.962 28 H 0.023 0.977 29 H 0.024 0.976 30 H 0.053 0.947 31 H 0.373 0.627 32 H 0.056 0.944 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.040 0.960 36 H 0.074 0.926 37 H 0.065 0.935 38 H 0.078 0.922 39 H 0.048 0.952 40 H 0.081 0.919 41 H 0.061 0.939 42 H 0.075 0.925 43 H 0.082 0.918 44 H 0.066 0.934 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.128 -6.506 15.826 17.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.167 4.167 3 Si 0.775 3.225 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.196 1.196 7 C -0.532 4.532 8 H 0.064 0.936 9 C 0.039 3.961 10 C -0.023 4.023 11 N -0.283 5.283 12 C -0.052 4.052 13 C -0.049 4.049 14 C 0.018 3.982 15 O -0.359 6.359 16 C -0.135 4.135 17 C -0.161 4.161 18 C -0.149 4.149 19 C -0.158 4.158 20 C -0.141 4.141 21 C -0.219 4.219 22 C -0.251 4.251 23 H 0.069 0.931 24 H 0.101 0.899 25 H -0.005 1.005 26 H 0.147 0.853 27 H 0.056 0.944 28 H 0.041 0.959 29 H 0.042 0.958 30 H 0.071 0.929 31 H 0.220 0.780 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.059 0.941 36 H 0.092 0.908 37 H 0.084 0.916 38 H 0.096 0.904 39 H 0.067 0.933 40 H 0.100 0.900 41 H 0.079 0.921 42 H 0.093 0.907 43 H 0.100 0.900 44 H 0.085 0.915 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.163 -6.257 15.789 16.985 hybrid contribution -0.002 0.650 -0.647 0.917 sum -0.165 -5.608 15.142 16.148 Atomic orbital electron populations 1.70014 1.07271 1.27257 1.49526 1.25521 0.95297 1.01716 0.94168 0.85775 0.78664 0.79391 0.78688 1.20113 1.21186 1.19615 1.20617 0.96315 0.91852 1.44423 0.93592 1.19006 0.95875 0.88146 0.93046 1.21408 0.92347 1.00375 0.88156 1.60310 1.28357 1.38611 1.01000 1.21935 0.93465 0.98482 0.91351 1.20607 0.94875 0.95343 0.94109 1.22014 0.89788 0.96301 0.90089 1.86773 1.43023 1.51800 1.54316 1.21380 0.97344 0.92802 1.01934 1.21594 0.97775 0.98233 0.98454 1.21492 0.97682 0.97306 0.98435 1.21565 0.97866 0.94570 1.01774 1.21494 0.96801 0.98721 0.97080 1.22707 0.95376 1.01834 1.02007 1.23024 0.98312 1.07885 0.95873 0.93069 0.89909 1.00492 0.85326 0.94352 0.95934 0.95803 0.92908 0.78041 0.92579 0.91222 0.91396 0.94122 0.90772 0.91640 0.90367 0.93334 0.89999 0.92061 0.90684 0.89965 0.91505 0.91291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.30 11.15 21.44 0.24 -52.06 16 2 C 0.03 1.84 5.01 84.65 0.42 2.26 16 3 Si 0.95 44.46 29.58 68.60 2.03 46.49 16 4 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 5 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 6 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 7 C -0.49 -28.17 8.99 25.60 0.23 -27.94 16 8 H 0.05 2.64 7.88 -2.91 -0.02 2.61 16 9 C 0.04 2.07 2.00 -52.90 -0.11 1.97 16 10 C 0.11 5.27 5.48 86.30 0.47 5.75 16 11 N -0.65 -27.29 4.63 -513.91 -2.38 -29.67 16 12 C 0.08 2.72 3.94 86.30 0.34 3.06 16 13 C -0.05 -1.33 0.52 -52.18 -0.03 -1.36 16 14 C 0.10 2.70 5.92 71.98 0.43 3.12 16 15 O -0.56 -18.53 11.05 -148.98 -1.65 -20.18 16 16 C -0.10 -2.50 4.10 30.60 0.13 -2.37 16 17 C -0.12 -2.86 5.65 30.60 0.17 -2.69 16 18 C -0.11 -2.10 5.92 30.59 0.18 -1.92 16 19 C -0.12 -2.40 5.65 30.59 0.17 -2.23 16 20 C -0.10 -2.19 4.73 30.60 0.14 -2.04 16 21 C -0.18 -8.13 9.40 30.60 0.29 -7.84 16 22 C -0.21 -10.21 9.88 30.62 0.30 -9.91 16 23 H 0.26 14.39 8.32 -92.71 -0.77 13.62 16 24 H 0.08 4.70 5.38 -2.39 -0.01 4.68 16 25 H -0.02 -1.14 7.87 -2.39 -0.02 -1.16 16 26 H 0.33 13.26 5.53 -89.69 -0.50 12.76 16 27 H 0.04 1.50 8.13 -2.38 -0.02 1.48 16 28 H 0.02 0.79 4.82 -2.39 -0.01 0.77 16 29 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.37 10.09 9.12 -74.06 -0.68 9.42 16 32 H 0.06 1.75 6.05 -2.39 -0.01 1.73 16 33 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.04 1.12 6.51 -2.39 -0.02 1.10 16 36 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 37 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.05 1.15 6.35 -2.39 -0.02 1.13 16 40 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 41 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.07 3.31 8.14 -2.39 -0.02 3.29 16 43 H 0.08 3.30 7.34 -2.39 -0.02 3.28 16 44 H 0.07 3.28 8.14 -2.38 -0.02 3.26 16 45 H 0.07 3.13 8.03 -2.39 -0.02 3.11 16 Total: -1.00 -62.65 335.82 1.19 -61.46 By element: Atomic # 1 Polarization: 36.30 SS G_CDS: -0.20 Total: 36.10 kcal Atomic # 6 Polarization: -45.28 SS G_CDS: 3.15 Total: -42.14 kcal Atomic # 7 Polarization: -79.60 SS G_CDS: -2.14 Total: -81.74 kcal Atomic # 8 Polarization: -18.53 SS G_CDS: -1.65 Total: -20.18 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -62.65 1.19 -61.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125589103.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.741 kcal (2) G-P(sol) polarization free energy of solvation -62.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds