Wall clock time and date at job start Mon Mar 30 2020 07:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 119.99919 * 2 1 4 4 H 1.48498 * 109.47035 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47166 * 299.99617 * 3 2 1 6 6 H 1.48497 * 109.47237 * 59.99926 * 3 2 1 7 7 C 1.37877 * 120.00338 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00683 * 179.97438 * 7 2 1 9 9 C 1.50709 * 119.99584 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46977 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.46955 * 179.97438 * 10 9 7 12 12 N 1.46903 * 109.47033 * 179.97438 * 11 10 9 13 13 C 1.46836 * 110.99971 * 66.04603 * 12 11 10 14 14 C 1.53056 * 109.59638 * 174.32114 * 13 12 11 15 15 C 1.53053 * 109.20859 * 58.90605 * 14 13 12 16 16 O 1.42894 * 109.41840 * 61.83706 * 15 14 13 17 17 C 1.52829 * 109.73784 * 181.91295 * 15 14 13 18 18 C 1.52982 * 109.63507 * 60.45080 * 17 15 14 19 19 C 1.53024 * 109.35318 * 59.93529 * 18 17 15 20 20 C 1.52960 * 109.40645 * 299.73890 * 19 18 17 21 21 C 1.52659 * 109.49706 * 60.23342 * 20 19 18 22 22 H 1.09008 * 109.64963 * 60.66295 * 21 20 19 23 23 C 1.46855 * 111.00032 * 301.71558 * 12 11 10 24 24 H 0.97008 * 120.00188 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.46984 * 59.99234 * 9 7 2 26 26 H 1.08998 * 109.46595 * 299.99503 * 9 7 2 27 27 H 1.09001 * 109.47215 * 59.99637 * 10 9 7 28 28 H 1.09007 * 109.46966 * 299.99866 * 10 9 7 29 29 H 1.09001 * 109.47454 * 59.99785 * 11 10 9 30 30 H 1.08998 * 109.47081 * 299.99533 * 11 10 9 31 31 H 1.09001 * 109.44774 * 294.36334 * 13 12 11 32 32 H 1.08998 * 109.44827 * 54.30794 * 13 12 11 33 33 H 1.09000 * 109.51362 * 178.82351 * 14 13 12 34 34 H 1.09000 * 109.51862 * 298.98420 * 14 13 12 35 35 H 0.96704 * 114.00313 * 60.00448 * 16 15 14 36 36 H 1.09000 * 109.43933 * 180.50501 * 17 15 14 37 37 H 1.09001 * 109.44565 * 300.43124 * 17 15 14 38 38 H 1.09006 * 109.49214 * 179.89529 * 18 17 15 39 39 H 1.09002 * 109.49556 * 299.96898 * 18 17 15 40 40 H 1.08996 * 109.48494 * 59.72335 * 19 18 17 41 41 H 1.09002 * 109.48283 * 179.75899 * 19 18 17 42 42 H 1.09003 * 109.44779 * 180.27520 * 20 19 18 43 43 H 1.08996 * 109.45028 * 300.22310 * 20 19 18 44 44 H 1.08998 * 109.49072 * 305.98702 * 23 12 11 45 45 H 1.08996 * 109.49263 * 66.05709 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9870 0.0012 12 7 2.4349 -6.1036 0.0006 13 6 3.2007 -6.1418 1.2528 14 6 4.0809 -7.3938 1.2782 15 6 5.0258 -7.3695 0.0745 16 8 5.8777 -6.2256 0.1622 17 6 5.8780 -8.6381 0.0616 18 6 4.9712 -9.8655 -0.0453 19 6 4.1574 -9.7837 -1.3386 20 6 3.2978 -8.5186 -1.3190 21 6 4.1995 -7.2915 -1.2118 22 1 4.8665 -7.2503 -2.0730 23 6 3.3238 -6.0354 -1.1664 24 1 -0.4851 0.8401 0.0004 25 1 0.6246 -2.5570 -0.8896 26 1 0.6241 -2.5567 0.8903 27 1 2.8719 -3.6043 0.8905 28 1 2.8719 -3.6043 -0.8895 29 1 0.8532 -5.0451 -0.8885 30 1 0.8540 -5.0445 0.8914 31 1 3.8299 -5.2543 1.3206 32 1 2.5131 -6.1647 2.0982 33 1 4.6643 -7.4100 2.1988 34 1 3.4516 -8.2824 1.2293 35 1 6.4274 -6.2046 0.9575 36 1 6.5551 -8.6116 -0.7921 37 1 6.4578 -8.6951 0.9829 38 1 5.5813 -10.7687 -0.0561 39 1 4.2946 -9.8935 0.8089 40 1 4.8341 -9.7502 -2.1924 41 1 3.5135 -10.6595 -1.4191 42 1 2.7142 -8.4622 -2.2379 43 1 2.6243 -8.5507 -0.4627 44 1 2.7261 -5.9757 -2.0759 45 1 3.9582 -5.1524 -1.0892 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127945273.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:08 Heat of formation + Delta-G solvation = -78.363598 kcal Electronic energy + Delta-G solvation = -21767.522733 eV Core-core repulsion = 18783.254047 eV Total energy + Delta-G solvation = -2984.268686 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.67481 -37.05631 -35.66595 -33.64513 -31.94498 -31.72234 -29.88153 -29.10308 -26.29657 -24.52866 -23.18012 -22.40304 -21.91915 -21.07464 -19.86961 -18.17623 -16.47363 -16.31708 -15.64804 -15.52977 -15.30106 -14.65626 -14.32903 -14.06172 -13.70287 -13.52594 -13.39664 -13.07106 -12.52724 -12.25267 -12.19668 -12.08389 -11.77073 -11.44675 -11.34039 -11.14166 -11.06057 -10.88443 -10.74903 -10.59310 -10.54884 -10.52185 -10.42228 -9.84490 -9.61001 -9.50203 -9.35827 -9.10795 -8.31571 -7.70950 -5.96367 -3.98475 3.32768 3.40039 3.44948 4.06803 4.35970 4.49006 4.51175 4.58473 4.77615 4.94663 5.06803 5.15274 5.20460 5.33325 5.39067 5.39699 5.48917 5.56936 5.66868 5.68945 5.73697 5.85149 5.89381 5.92686 5.97290 6.04932 6.07090 6.09195 6.17266 6.22938 6.31941 6.34946 6.44386 6.52265 6.70965 6.88119 7.14251 7.48321 7.53790 7.67786 7.71720 7.86866 8.03895 8.48011 9.08879 9.65473 11.14741 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.035840 B = 0.003977 C = 0.003814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.061105 B = 7038.699376 C = 7339.273273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.518 4.518 8 H 0.053 0.947 9 C 0.024 3.976 10 C -0.143 4.143 11 C 0.054 3.946 12 N -0.536 5.536 13 C 0.056 3.944 14 C -0.142 4.142 15 C 0.137 3.863 16 O -0.556 6.556 17 C -0.142 4.142 18 C -0.118 4.118 19 C -0.123 4.123 20 C -0.108 4.108 21 C -0.065 4.065 22 H 0.073 0.927 23 C 0.059 3.941 24 H 0.259 0.741 25 H 0.015 0.985 26 H 0.014 0.986 27 H 0.046 0.954 28 H 0.049 0.951 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.045 0.955 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.082 0.918 35 H 0.371 0.629 36 H 0.067 0.933 37 H 0.060 0.940 38 H 0.059 0.941 39 H 0.066 0.934 40 H 0.058 0.942 41 H 0.061 0.939 42 H 0.064 0.936 43 H 0.082 0.918 44 H 0.070 0.930 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.780 -20.781 0.555 22.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.718 3.282 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.556 4.556 8 H 0.072 0.928 9 C -0.014 4.014 10 C -0.181 4.181 11 C -0.074 4.074 12 N -0.259 5.259 13 C -0.073 4.073 14 C -0.180 4.180 15 C 0.096 3.904 16 O -0.361 6.361 17 C -0.180 4.180 18 C -0.155 4.155 19 C -0.161 4.161 20 C -0.145 4.145 21 C -0.084 4.084 22 H 0.091 0.909 23 C -0.070 4.070 24 H 0.069 0.931 25 H 0.033 0.967 26 H 0.033 0.967 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.063 0.937 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.100 0.900 35 H 0.218 0.782 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.085 0.915 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.082 0.918 43 H 0.100 0.900 44 H 0.088 0.912 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 9.072 -20.973 -0.052 22.851 hybrid contribution 1.209 1.657 0.633 2.147 sum 10.280 -19.316 0.581 21.889 Atomic orbital electron populations 1.69976 1.06024 1.26385 1.51201 1.25024 0.94834 0.99200 0.95432 0.86567 0.80162 0.83921 0.77559 1.19784 1.21006 1.21031 1.21315 0.92997 0.91196 1.50097 0.92849 1.19031 0.93897 0.91368 0.97060 1.22199 0.99834 0.95785 1.00332 1.22298 0.94481 0.88478 1.02105 1.62234 1.17683 1.44204 1.01790 1.21963 0.95840 0.96767 0.92685 1.22340 0.98434 0.99896 0.97329 1.21133 0.89081 0.84467 0.95685 1.86605 1.57455 1.44904 1.47133 1.22171 0.98432 0.95291 1.02081 1.21542 0.98295 0.97063 0.98607 1.21608 0.98651 0.98352 0.97462 1.21492 0.97581 0.92228 1.03245 1.21059 0.95713 0.95825 0.95815 0.90853 1.22063 0.94554 0.96570 0.93768 0.93120 0.96675 0.96724 0.93496 0.93239 0.91207 0.91338 0.93683 0.91287 0.91960 0.89992 0.78231 0.91425 0.92098 0.92233 0.91510 0.92318 0.92067 0.91772 0.89961 0.91171 0.93123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.50 13.29 55.43 0.74 -26.77 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 22.19 29.54 -169.99 -5.02 17.17 16 4 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.52 -15.16 9.11 -34.44 -0.31 -15.47 16 8 H 0.05 1.54 7.74 -52.49 -0.41 1.14 16 9 C 0.02 0.64 4.97 -27.88 -0.14 0.50 16 10 C -0.14 -3.06 4.46 -26.73 -0.12 -3.18 16 11 C 0.05 0.96 5.36 -3.83 -0.02 0.94 16 12 N -0.54 -8.16 4.04 -234.57 -0.95 -9.10 16 13 C 0.06 0.79 4.91 -3.83 -0.02 0.77 16 14 C -0.14 -1.58 4.44 -26.67 -0.12 -1.70 16 15 C 0.14 1.53 0.73 -90.64 -0.07 1.46 16 16 O -0.56 -6.98 11.73 -35.23 -0.41 -7.40 16 17 C -0.14 -1.28 5.06 -26.83 -0.14 -1.42 16 18 C -0.12 -0.97 5.66 -26.73 -0.15 -1.12 16 19 C -0.12 -1.08 5.92 -26.74 -0.16 -1.23 16 20 C -0.11 -1.15 4.75 -26.93 -0.13 -1.28 16 21 C -0.07 -0.80 2.28 -90.66 -0.21 -1.01 16 22 H 0.07 0.91 8.14 -51.92 -0.42 0.49 16 23 C 0.06 0.88 4.12 -3.75 -0.02 0.86 16 24 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 25 H 0.01 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 1.02 6.68 -51.93 -0.35 0.67 16 28 H 0.05 1.08 6.51 -51.93 -0.34 0.75 16 29 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.07 1.22 8.06 -51.93 -0.42 0.80 16 31 H 0.04 0.73 6.35 -51.93 -0.33 0.40 16 32 H 0.07 0.96 8.07 -51.93 -0.42 0.54 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.08 0.88 4.88 -51.93 -0.25 0.63 16 35 H 0.37 3.31 9.05 45.56 0.41 3.73 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.55 6.44 -51.93 -0.33 0.22 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.08 0.96 5.90 -51.93 -0.31 0.65 16 44 H 0.07 1.05 8.12 -51.93 -0.42 0.62 16 45 H 0.05 0.89 6.18 -51.93 -0.32 0.57 16 LS Contribution 329.00 15.07 4.96 4.96 Total: -1.00 -31.27 329.00 -9.64 -40.91 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -7.27 Total: 0.55 kcal Atomic # 6 Polarization: -18.63 SS G_CDS: -1.69 Total: -20.32 kcal Atomic # 7 Polarization: -35.66 SS G_CDS: -0.21 Total: -35.87 kcal Atomic # 8 Polarization: -6.98 SS G_CDS: -0.41 Total: -7.40 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.27 -9.64 -40.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127945273.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.453 kcal (2) G-P(sol) polarization free energy of solvation -31.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds