Wall clock time and date at job start Mon Mar 30 2020 07:03:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86793 * 120.00294 * 2 1 4 4 H 1.48500 * 109.47339 * 269.99874 * 3 2 1 5 5 H 1.48504 * 109.47122 * 30.00127 * 3 2 1 6 6 H 1.48499 * 109.47209 * 149.99885 * 3 2 1 7 7 C 1.37885 * 119.99572 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00034 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99797 * 179.97438 * 7 2 1 10 10 C 1.52997 * 109.46981 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47155 * 179.97438 * 10 9 7 12 12 N 1.46897 * 109.47469 * 180.02562 * 11 10 9 13 13 C 1.46805 * 111.00109 * 66.04656 * 12 11 10 14 14 C 1.53106 * 109.69230 * 185.60117 * 13 12 11 15 15 C 1.53005 * 109.08584 * 301.02909 * 14 13 12 16 16 O 1.42900 * 109.48380 * 298.14539 * 15 14 13 17 17 C 1.52917 * 109.97953 * 177.80583 * 15 14 13 18 18 C 1.53077 * 109.25170 * 179.79807 * 17 15 14 19 19 C 1.52955 * 109.64760 * 59.80894 * 18 17 15 20 20 C 1.53061 * 109.66580 * 300.45405 * 19 18 17 21 21 C 1.52912 * 109.26870 * 59.79691 * 20 19 18 22 22 H 1.09000 * 109.44160 * 59.38230 * 21 20 19 23 23 C 1.46911 * 111.00344 * 190.51157 * 12 11 10 24 24 H 0.97001 * 119.99789 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.46977 * 60.00372 * 9 7 2 26 26 H 1.09003 * 109.47177 * 300.00327 * 9 7 2 27 27 H 1.09002 * 109.46736 * 60.00501 * 10 9 7 28 28 H 1.09003 * 109.47658 * 300.00308 * 10 9 7 29 29 H 1.09007 * 109.47146 * 60.00593 * 11 10 9 30 30 H 1.08999 * 109.47496 * 300.00327 * 11 10 9 31 31 H 1.09005 * 109.43395 * 65.52909 * 13 12 11 32 32 H 1.09001 * 109.43332 * 305.66985 * 13 12 11 33 33 H 1.08999 * 109.53705 * 181.15134 * 14 13 12 34 34 H 1.08992 * 109.60046 * 60.95232 * 14 13 12 35 35 H 0.96700 * 114.00484 * 299.35574 * 16 15 14 36 36 H 1.08991 * 109.50806 * 299.73117 * 17 15 14 37 37 H 1.08997 * 109.50426 * 59.86881 * 17 15 14 38 38 H 1.08997 * 109.43820 * 179.86878 * 18 17 15 39 39 H 1.08999 * 109.44233 * 299.75992 * 18 17 15 40 40 H 1.08998 * 109.43945 * 180.38562 * 19 18 17 41 41 H 1.09007 * 109.40526 * 60.49011 * 19 18 17 42 42 H 1.09004 * 109.50022 * 299.86123 * 20 19 18 43 43 H 1.09004 * 109.53848 * 179.75781 * 20 19 18 44 44 H 1.08997 * 109.49373 * 294.21135 * 23 12 11 45 45 H 1.09002 * 109.49452 * 54.29483 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1942 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 6 4.0214 -2.6367 -0.0010 11 6 5.5513 -2.6368 -0.0022 12 7 6.0410 -4.0218 -0.0027 13 6 5.6907 -4.7032 -1.2550 14 6 6.0901 -6.1788 -1.1686 15 6 7.5953 -6.2755 -0.9119 16 8 8.3039 -5.6862 -2.0041 17 6 8.0077 -7.7409 -0.7677 18 6 9.5158 -7.8185 -0.5167 19 6 9.8638 -7.0578 0.7638 20 6 9.4398 -5.5937 0.6246 21 6 7.9318 -5.5261 0.3804 22 1 7.4078 -5.9899 1.2162 23 6 7.4881 -4.0688 0.2463 24 1 -0.4850 0.8401 0.0004 25 1 3.8752 -0.6807 0.8889 26 1 3.8745 -0.6801 -0.8911 27 1 3.6577 -3.1507 -0.8908 28 1 3.6583 -3.1504 0.8892 29 1 5.9154 -2.1228 0.8874 30 1 5.9140 -2.1233 -0.8926 31 1 6.2190 -4.2324 -2.0841 32 1 4.6161 -4.6274 -1.4208 33 1 5.8476 -6.6775 -2.1069 34 1 5.5496 -6.6566 -0.3516 35 1 8.1400 -6.1138 -2.8558 36 1 7.4755 -8.1878 0.0720 37 1 7.7629 -8.2796 -1.6830 38 1 9.8127 -8.8619 -0.4110 39 1 10.0470 -7.3741 -1.3584 40 1 10.9390 -7.1094 0.9355 41 1 9.3398 -7.5086 1.6067 42 1 9.9653 -5.1411 -0.2164 43 1 9.6849 -5.0546 1.5397 44 1 8.0157 -3.6030 -0.5860 45 1 7.7162 -3.5330 1.1677 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127945538.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:11 Heat of formation + Delta-G solvation = -79.609165 kcal Electronic energy + Delta-G solvation = -21377.975579 eV Core-core repulsion = 18393.652882 eV Total energy + Delta-G solvation = -2984.322698 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.52442 -37.16773 -35.37706 -33.92880 -32.14126 -32.01659 -30.48925 -29.05544 -26.92140 -24.10394 -23.49815 -22.20293 -21.72736 -20.15273 -19.81490 -19.60079 -16.67033 -16.30803 -15.85156 -15.65831 -15.12663 -14.86523 -14.43214 -14.09607 -13.91925 -13.83482 -13.31872 -13.02044 -12.81156 -12.56352 -12.19634 -11.93494 -11.78982 -11.67026 -11.52885 -11.32725 -11.27234 -10.99948 -10.86737 -10.82397 -10.64837 -10.61604 -9.96240 -9.88952 -9.74363 -9.58314 -9.40583 -9.10751 -8.49640 -7.99680 -6.00271 -3.97596 3.33499 3.40647 3.45139 3.97761 4.21568 4.45253 4.49037 4.50917 4.59064 4.86386 4.96663 5.05322 5.18097 5.28099 5.33210 5.33895 5.38928 5.53196 5.55482 5.59286 5.61950 5.70751 5.76233 5.79894 5.86724 5.92777 5.95867 6.02424 6.06939 6.11285 6.17873 6.21246 6.25187 6.40975 6.62023 6.65220 6.97491 7.34407 7.37850 7.45453 7.52920 7.56001 7.85162 8.59594 9.05512 9.62690 11.13399 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.042758 B = 0.003570 C = 0.003449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.692128 B = 7841.694266 C = 8116.650096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.064 3.936 3 Si 0.880 3.120 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.517 4.517 8 H 0.071 0.929 9 C -0.014 4.014 10 C -0.097 4.097 11 C 0.055 3.945 12 N -0.539 5.539 13 C 0.057 3.943 14 C -0.141 4.141 15 C 0.137 3.863 16 O -0.553 6.553 17 C -0.143 4.143 18 C -0.114 4.114 19 C -0.117 4.117 20 C -0.111 4.111 21 C -0.065 4.065 22 H 0.085 0.915 23 C 0.063 3.937 24 H 0.262 0.738 25 H 0.015 0.985 26 H 0.008 0.992 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.027 0.973 31 H 0.035 0.965 32 H 0.081 0.919 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.370 0.630 36 H 0.071 0.929 37 H 0.062 0.938 38 H 0.057 0.943 39 H 0.066 0.934 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.070 0.930 43 H 0.060 0.940 44 H 0.039 0.961 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.598 -15.791 -1.746 26.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.555 4.555 8 H 0.089 0.911 9 C -0.052 4.052 10 C -0.135 4.135 11 C -0.072 4.072 12 N -0.264 5.264 13 C -0.070 4.070 14 C -0.179 4.179 15 C 0.097 3.903 16 O -0.359 6.359 17 C -0.181 4.181 18 C -0.152 4.152 19 C -0.155 4.155 20 C -0.149 4.149 21 C -0.084 4.084 22 H 0.103 0.897 23 C -0.065 4.065 24 H 0.072 0.928 25 H 0.033 0.967 26 H 0.027 0.973 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.045 0.955 31 H 0.053 0.947 32 H 0.100 0.900 33 H 0.084 0.916 34 H 0.097 0.903 35 H 0.216 0.784 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.085 0.915 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.088 0.912 43 H 0.079 0.921 44 H 0.057 0.943 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 20.426 -15.518 -0.882 25.667 hybrid contribution 0.424 0.945 -1.133 1.535 sum 20.849 -14.573 -2.014 25.517 Atomic orbital electron populations 1.69921 1.06299 1.26795 1.51480 1.25044 0.94732 0.99171 0.94677 0.86765 0.80381 0.83629 0.78429 1.20393 1.21432 1.19014 1.21159 0.89553 0.94419 1.50384 0.91056 1.19556 0.97108 0.92436 0.96051 1.21473 0.91087 0.99396 1.01504 1.22271 0.97864 0.86987 1.00048 1.61909 1.12973 1.16984 1.34487 1.22013 1.01310 0.93131 0.90596 1.22255 0.95879 0.97446 1.02309 1.21178 0.90245 0.91343 0.87565 1.86544 1.70837 1.60343 1.18132 1.22201 0.96984 0.96693 1.02204 1.21440 0.95698 0.99597 0.98447 1.21507 1.00587 0.95723 0.97669 1.21482 0.95287 0.96351 1.01800 1.21107 0.95984 0.95790 0.95514 0.89655 1.22013 0.88219 0.95702 1.00594 0.92814 0.96665 0.97342 0.92960 0.92029 0.91349 0.95486 0.94692 0.90044 0.91584 0.90292 0.78354 0.91056 0.91930 0.92476 0.91494 0.92196 0.92211 0.91166 0.92094 0.94320 0.91208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.48 13.96 55.43 0.77 -27.71 16 2 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 22.21 27.47 -169.99 -4.67 17.54 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 7 C -0.52 -15.13 9.66 -34.44 -0.33 -15.47 16 8 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 9 C -0.01 -0.33 4.04 -27.88 -0.11 -0.45 16 10 C -0.10 -1.99 5.09 -26.74 -0.14 -2.13 16 11 C 0.06 0.96 4.96 -3.83 -0.02 0.94 16 12 N -0.54 -8.18 4.65 -234.68 -1.09 -9.27 16 13 C 0.06 0.80 5.15 -3.82 -0.02 0.78 16 14 C -0.14 -1.54 5.12 -26.67 -0.14 -1.68 16 15 C 0.14 1.37 0.57 -90.59 -0.05 1.31 16 16 O -0.55 -5.64 10.30 -35.23 -0.36 -6.00 16 17 C -0.14 -1.17 4.97 -26.73 -0.13 -1.30 16 18 C -0.11 -0.90 5.76 -26.71 -0.15 -1.05 16 19 C -0.12 -0.96 5.92 -26.72 -0.16 -1.12 16 20 C -0.11 -1.07 5.10 -26.74 -0.14 -1.21 16 21 C -0.07 -0.72 1.93 -90.63 -0.18 -0.89 16 22 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 23 C 0.06 0.83 4.65 -3.85 -0.02 0.81 16 24 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 25 H 0.02 0.37 7.20 -51.93 -0.37 0.00 16 26 H 0.01 0.20 7.57 -51.93 -0.39 -0.19 16 27 H 0.05 1.08 6.44 -51.93 -0.33 0.74 16 28 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 29 H 0.07 1.16 7.98 -51.92 -0.41 0.75 16 30 H 0.03 0.47 8.12 -51.93 -0.42 0.05 16 31 H 0.03 0.50 7.74 -51.93 -0.40 0.10 16 32 H 0.08 1.23 6.23 -51.93 -0.32 0.91 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.37 2.59 9.05 45.56 0.41 3.00 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.07 0.56 7.66 -51.93 -0.40 0.16 16 40 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 42 H 0.07 0.75 7.63 -51.93 -0.40 0.36 16 43 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.04 0.55 7.72 -51.93 -0.40 0.15 16 45 H 0.07 0.90 8.02 -51.93 -0.42 0.48 16 LS Contribution 334.59 15.07 5.04 5.04 Total: -1.00 -31.50 334.59 -9.66 -41.16 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -7.67 Total: -1.14 kcal Atomic # 6 Polarization: -17.95 SS G_CDS: -1.68 Total: -19.63 kcal Atomic # 7 Polarization: -36.66 SS G_CDS: -0.32 Total: -36.97 kcal Atomic # 8 Polarization: -5.64 SS G_CDS: -0.36 Total: -6.00 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.67 Total: 17.54 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.50 -9.66 -41.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127945538.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.452 kcal (2) G-P(sol) polarization free energy of solvation -31.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds