Wall clock time and date at job start Mon Mar 30 2020 07:03:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86793 * 120.00294 * 2 1 4 4 H 1.48500 * 109.47339 * 269.99874 * 3 2 1 5 5 H 1.48504 * 109.47122 * 30.00127 * 3 2 1 6 6 H 1.48499 * 109.47209 * 149.99885 * 3 2 1 7 7 C 1.37885 * 119.99572 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00034 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99797 * 179.97438 * 7 2 1 10 10 C 1.52997 * 109.46981 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47155 * 179.97438 * 10 9 7 12 12 N 1.46897 * 109.47469 * 180.02562 * 11 10 9 13 13 C 1.46805 * 111.00109 * 66.04656 * 12 11 10 14 14 C 1.53106 * 109.69230 * 185.60117 * 13 12 11 15 15 C 1.53005 * 109.08584 * 301.02909 * 14 13 12 16 16 O 1.42900 * 109.48380 * 298.14539 * 15 14 13 17 17 C 1.52917 * 109.97953 * 177.80583 * 15 14 13 18 18 C 1.53077 * 109.25170 * 179.79807 * 17 15 14 19 19 C 1.52955 * 109.64760 * 59.80894 * 18 17 15 20 20 C 1.53061 * 109.66580 * 300.45405 * 19 18 17 21 21 C 1.52912 * 109.26870 * 59.79691 * 20 19 18 22 22 H 1.09000 * 109.44160 * 59.38230 * 21 20 19 23 23 C 1.46911 * 111.00344 * 190.51157 * 12 11 10 24 24 H 0.97001 * 119.99789 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.46977 * 60.00372 * 9 7 2 26 26 H 1.09003 * 109.47177 * 300.00327 * 9 7 2 27 27 H 1.09002 * 109.46736 * 60.00501 * 10 9 7 28 28 H 1.09003 * 109.47658 * 300.00308 * 10 9 7 29 29 H 1.09007 * 109.47146 * 60.00593 * 11 10 9 30 30 H 1.08999 * 109.47496 * 300.00327 * 11 10 9 31 31 H 1.09005 * 109.43395 * 65.52909 * 13 12 11 32 32 H 1.09001 * 109.43332 * 305.66985 * 13 12 11 33 33 H 1.08999 * 109.53705 * 181.15134 * 14 13 12 34 34 H 1.08992 * 109.60046 * 60.95232 * 14 13 12 35 35 H 0.96700 * 114.00484 * 299.35574 * 16 15 14 36 36 H 1.08991 * 109.50806 * 299.73117 * 17 15 14 37 37 H 1.08997 * 109.50426 * 59.86881 * 17 15 14 38 38 H 1.08997 * 109.43820 * 179.86878 * 18 17 15 39 39 H 1.08999 * 109.44233 * 299.75992 * 18 17 15 40 40 H 1.08998 * 109.43945 * 180.38562 * 19 18 17 41 41 H 1.09007 * 109.40526 * 60.49011 * 19 18 17 42 42 H 1.09004 * 109.50022 * 299.86123 * 20 19 18 43 43 H 1.09004 * 109.53848 * 179.75781 * 20 19 18 44 44 H 1.08997 * 109.49373 * 294.21135 * 23 12 11 45 45 H 1.09002 * 109.49452 * 54.29483 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1942 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 6 4.0214 -2.6367 -0.0010 11 6 5.5513 -2.6368 -0.0022 12 7 6.0410 -4.0218 -0.0027 13 6 5.6907 -4.7032 -1.2550 14 6 6.0901 -6.1788 -1.1686 15 6 7.5953 -6.2755 -0.9119 16 8 8.3039 -5.6862 -2.0041 17 6 8.0077 -7.7409 -0.7677 18 6 9.5158 -7.8185 -0.5167 19 6 9.8638 -7.0578 0.7638 20 6 9.4398 -5.5937 0.6246 21 6 7.9318 -5.5261 0.3804 22 1 7.4078 -5.9899 1.2162 23 6 7.4881 -4.0688 0.2463 24 1 -0.4850 0.8401 0.0004 25 1 3.8752 -0.6807 0.8889 26 1 3.8745 -0.6801 -0.8911 27 1 3.6577 -3.1507 -0.8908 28 1 3.6583 -3.1504 0.8892 29 1 5.9154 -2.1228 0.8874 30 1 5.9140 -2.1233 -0.8926 31 1 6.2190 -4.2324 -2.0841 32 1 4.6161 -4.6274 -1.4208 33 1 5.8476 -6.6775 -2.1069 34 1 5.5496 -6.6566 -0.3516 35 1 8.1400 -6.1138 -2.8558 36 1 7.4755 -8.1878 0.0720 37 1 7.7629 -8.2796 -1.6830 38 1 9.8127 -8.8619 -0.4110 39 1 10.0470 -7.3741 -1.3584 40 1 10.9390 -7.1094 0.9355 41 1 9.3398 -7.5086 1.6067 42 1 9.9653 -5.1411 -0.2164 43 1 9.6849 -5.0546 1.5397 44 1 8.0157 -3.6030 -0.5860 45 1 7.7162 -3.5330 1.1677 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127945538.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:11 Heat of formation + Delta-G solvation = -100.807346 kcal Electronic energy + Delta-G solvation = -21378.894802 eV Core-core repulsion = 18393.652882 eV Total energy + Delta-G solvation = -2985.241920 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.38809 -38.32128 -36.12220 -35.74929 -33.94656 -32.85239 -31.85092 -29.89188 -28.60668 -25.41812 -24.51466 -23.19530 -23.00244 -21.64486 -20.74356 -20.61315 -18.88800 -17.12687 -16.90571 -16.46759 -16.42050 -16.16840 -15.81145 -15.54538 -14.99270 -14.76981 -14.69243 -14.34357 -13.88190 -13.74265 -13.60593 -13.31977 -12.92428 -12.78314 -12.65101 -12.48389 -12.44230 -12.22736 -11.98544 -11.84362 -11.79355 -11.75002 -11.44370 -11.41532 -11.32827 -11.22896 -10.77139 -10.70363 -10.37260 -9.21641 -8.30166 -6.34361 1.35000 1.37126 1.49634 2.35874 2.91196 3.04951 3.37635 3.70008 3.72504 3.83036 4.00677 4.15824 4.19497 4.23916 4.34639 4.43455 4.47767 4.54099 4.57348 4.62705 4.67240 4.73673 4.76940 4.84482 4.90306 4.93398 4.95702 5.01638 5.06625 5.09843 5.16738 5.23400 5.31338 5.32218 5.36127 5.45620 5.51181 5.59119 5.64093 5.65662 6.14189 6.23967 6.29916 6.73581 6.94939 7.30138 8.86928 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.042758 B = 0.003570 C = 0.003449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.692128 B = 7841.694266 C = 8116.650096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.002 3.998 3 Si 0.954 3.046 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.246 1.246 7 C -0.533 4.533 8 H 0.029 0.971 9 C -0.009 4.009 10 C -0.086 4.086 11 C 0.066 3.934 12 N -0.546 5.546 13 C 0.056 3.944 14 C -0.136 4.136 15 C 0.141 3.859 16 O -0.566 6.566 17 C -0.138 4.138 18 C -0.112 4.112 19 C -0.116 4.116 20 C -0.106 4.106 21 C -0.066 4.066 22 H 0.082 0.918 23 C 0.065 3.935 24 H 0.267 0.733 25 H 0.021 0.979 26 H 0.016 0.984 27 H 0.045 0.955 28 H 0.049 0.951 29 H 0.074 0.926 30 H 0.027 0.973 31 H 0.030 0.970 32 H 0.062 0.938 33 H 0.085 0.915 34 H 0.074 0.926 35 H 0.384 0.616 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.062 0.938 40 H 0.069 0.931 41 H 0.063 0.937 42 H 0.059 0.941 43 H 0.063 0.937 44 H 0.028 0.972 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.124 -16.119 -1.860 28.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.194 4.194 3 Si 0.777 3.223 4 H -0.191 1.191 5 H -0.208 1.208 6 H -0.170 1.170 7 C -0.571 4.571 8 H 0.048 0.952 9 C -0.047 4.047 10 C -0.124 4.124 11 C -0.062 4.062 12 N -0.270 5.270 13 C -0.071 4.071 14 C -0.174 4.174 15 C 0.101 3.899 16 O -0.373 6.373 17 C -0.176 4.176 18 C -0.150 4.150 19 C -0.154 4.154 20 C -0.144 4.144 21 C -0.084 4.084 22 H 0.100 0.900 23 C -0.063 4.063 24 H 0.075 0.925 25 H 0.039 0.961 26 H 0.034 0.966 27 H 0.064 0.936 28 H 0.067 0.933 29 H 0.093 0.907 30 H 0.045 0.955 31 H 0.048 0.952 32 H 0.081 0.919 33 H 0.104 0.896 34 H 0.093 0.907 35 H 0.233 0.767 36 H 0.090 0.910 37 H 0.095 0.905 38 H 0.089 0.911 39 H 0.080 0.920 40 H 0.087 0.913 41 H 0.082 0.918 42 H 0.077 0.923 43 H 0.082 0.918 44 H 0.047 0.953 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 22.969 -15.875 -1.005 27.939 hybrid contribution -0.440 0.981 -1.114 1.548 sum 22.529 -14.895 -2.120 27.090 Atomic orbital electron populations 1.70075 1.08336 1.28202 1.52727 1.26061 0.95668 1.03651 0.94064 0.85608 0.79500 0.78015 0.79225 1.19147 1.20781 1.16974 1.21497 0.92164 0.93074 1.50363 0.95222 1.19491 0.93879 0.94988 0.96384 1.21277 0.93679 0.96798 1.00620 1.22037 0.95152 0.88646 1.00349 1.61887 1.14418 1.15499 1.35210 1.22028 1.00090 0.95126 0.89904 1.22246 0.96799 0.95151 1.03225 1.21097 0.89290 0.92433 0.87087 1.86515 1.70801 1.60999 1.19006 1.22155 0.97255 0.95172 1.03009 1.21430 0.95263 1.00277 0.97982 1.21514 1.01235 0.94557 0.98085 1.21431 0.93972 0.97564 1.01458 1.21113 0.96920 0.94217 0.96195 0.90001 1.22048 0.86585 0.97463 1.00168 0.92458 0.96101 0.96579 0.93615 0.93260 0.90716 0.95495 0.95184 0.91921 0.89637 0.90739 0.76719 0.90963 0.90506 0.91146 0.91951 0.91255 0.91846 0.92251 0.91781 0.95329 0.91010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.25 13.96 21.45 0.30 -60.95 16 2 C 0.00 0.12 5.47 84.66 0.46 0.58 16 3 Si 0.95 45.36 27.47 68.60 1.88 47.25 16 4 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 5 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 6 H -0.25 -10.88 6.54 99.48 0.65 -10.23 16 7 C -0.53 -31.97 9.66 25.60 0.25 -31.72 16 8 H 0.03 1.95 7.99 -2.91 -0.02 1.93 16 9 C -0.01 -0.46 4.04 29.85 0.12 -0.34 16 10 C -0.09 -3.57 5.09 30.59 0.16 -3.41 16 11 C 0.07 2.24 4.96 86.30 0.43 2.67 16 12 N -0.55 -16.23 4.65 -896.38 -4.16 -20.39 16 13 C 0.06 1.55 5.15 86.36 0.44 1.99 16 14 C -0.14 -2.79 5.12 30.63 0.16 -2.64 16 15 C 0.14 2.55 0.57 -10.78 -0.01 2.54 16 16 O -0.57 -10.45 10.30 -148.98 -1.54 -11.99 16 17 C -0.14 -1.89 4.97 30.59 0.15 -1.74 16 18 C -0.11 -1.46 5.76 30.60 0.18 -1.28 16 19 C -0.12 -1.63 5.92 30.60 0.18 -1.45 16 20 C -0.11 -1.86 5.10 30.59 0.16 -1.71 16 21 C -0.07 -1.35 1.93 -10.80 -0.02 -1.37 16 22 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 23 C 0.07 1.65 4.65 86.28 0.40 2.05 16 24 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 25 H 0.02 0.99 7.20 -2.39 -0.02 0.97 16 26 H 0.02 0.75 7.57 -2.39 -0.02 0.74 16 27 H 0.05 1.93 6.44 -2.39 -0.02 1.92 16 28 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.07 2.43 7.98 -2.38 -0.02 2.42 16 30 H 0.03 0.91 8.12 -2.39 -0.02 0.89 16 31 H 0.03 0.85 7.74 -2.38 -0.02 0.83 16 32 H 0.06 1.93 6.23 -2.39 -0.01 1.92 16 33 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.38 4.51 9.05 -74.06 -0.67 3.84 16 36 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.07 0.75 8.14 -2.39 -0.02 0.74 16 39 H 0.06 0.89 7.66 -2.39 -0.02 0.87 16 40 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 42 H 0.06 1.18 7.63 -2.39 -0.02 1.16 16 43 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.03 0.79 7.72 -2.39 -0.02 0.77 16 45 H 0.07 1.77 8.02 -2.39 -0.02 1.75 16 Total: -1.00 -68.44 334.59 -0.25 -68.69 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: 0.21 Total: 13.22 kcal Atomic # 6 Polarization: -38.87 SS G_CDS: 3.06 Total: -35.82 kcal Atomic # 7 Polarization: -77.49 SS G_CDS: -3.86 Total: -81.35 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: -1.54 Total: -11.99 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 1.88 Total: 47.25 kcal Total: -68.44 -0.25 -68.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127945538.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.119 kcal (2) G-P(sol) polarization free energy of solvation -68.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds