Wall clock time and date at job start Mon Mar 30 2020 06:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47155 * 89.99872 * 8 6 4 10 10 H 1.48499 * 109.47102 * 210.00327 * 8 6 4 11 11 H 1.48499 * 109.46909 * 330.00049 * 8 6 4 12 12 N 1.46906 * 109.47302 * 240.00536 * 2 1 3 13 13 C 1.46897 * 111.00172 * 84.99810 * 12 2 1 14 14 C 1.50697 * 109.46908 * 180.02562 * 13 12 2 15 15 C 1.33391 * 125.20661 * 90.00234 * 14 13 12 16 16 C 1.38428 * 114.92134 * 179.97438 * 15 14 13 17 17 C 1.33389 * 114.91807 * 0.02562 * 16 15 14 18 18 C 1.50701 * 125.19912 * 180.02562 * 17 16 15 19 19 C 1.52991 * 109.47497 * 59.99302 * 18 17 16 20 20 C 1.53000 * 109.47252 * 179.97438 * 18 17 16 21 21 C 1.53007 * 109.47020 * 299.99255 * 18 17 16 22 22 S 1.75881 * 109.59680 * 359.75231 * 17 16 15 23 23 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 24 24 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 26 26 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 27 27 H 1.00899 * 110.99467 * 321.04346 * 12 2 1 28 28 H 1.09005 * 109.47066 * 299.99968 * 13 12 2 29 29 H 1.09001 * 109.47085 * 59.99954 * 13 12 2 30 30 H 1.08001 * 122.53763 * 359.95293 * 15 14 13 31 31 H 1.07991 * 122.53698 * 180.02562 * 16 15 14 32 32 H 1.08999 * 109.47064 * 60.00262 * 19 18 17 33 33 H 1.09005 * 109.47582 * 180.02562 * 19 18 17 34 34 H 1.09001 * 109.47762 * 300.00493 * 19 18 17 35 35 H 1.09003 * 109.47153 * 59.99600 * 20 18 17 36 36 H 1.08999 * 109.47647 * 179.97438 * 20 18 17 37 37 H 1.09003 * 109.46859 * 299.99992 * 20 18 17 38 38 H 1.09007 * 109.46786 * 60.00394 * 21 18 17 39 39 H 1.08996 * 109.47046 * 180.02562 * 21 18 17 40 40 H 1.08996 * 109.47260 * 300.00698 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.6298 -0.5460 4.4123 10 1 1.3432 -0.9495 5.1120 11 1 2.4860 -2.5663 3.7118 12 7 2.0197 -0.6924 -1.1995 13 6 2.0825 0.2227 -2.3469 14 6 2.5874 -0.5216 -3.5560 15 6 1.8212 -1.1643 -4.4388 16 6 2.5097 -1.7770 -5.4717 17 6 3.8350 -1.6323 -5.4273 18 6 4.8049 -2.2006 -6.4309 19 6 4.4924 -1.6366 -7.8183 20 6 6.2321 -1.8172 -6.0347 21 6 4.6751 -3.7249 -6.4590 22 16 4.2767 -0.6701 -4.0228 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 -0.8900 26 1 0.7096 1.1617 3.4844 27 1 1.4496 -1.4978 -1.4101 28 1 1.0870 0.6164 -2.5525 29 1 2.7588 1.0463 -2.1182 30 1 0.7453 -1.2040 -4.3539 31 1 2.0116 -2.3302 -6.2540 32 1 4.5849 -0.5508 -7.7984 33 1 5.1937 -2.0481 -8.5443 34 1 3.4756 -1.9094 -8.1009 35 1 6.4550 -2.2187 -5.0461 36 1 6.9337 -2.2286 -6.7603 37 1 6.3243 -0.7312 -6.0149 38 1 3.6583 -3.9978 -6.7416 39 1 5.3770 -4.1361 -7.1845 40 1 4.8977 -4.1268 -5.4705 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134971086.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:55 Heat of formation + Delta-G solvation = 10.534605 kcal Electronic energy + Delta-G solvation = -17861.992426 eV Core-core repulsion = 15188.498432 eV Total energy + Delta-G solvation = -2673.493994 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.62391 -36.75320 -35.37241 -32.59546 -30.05596 -27.60879 -27.40566 -27.33953 -25.19083 -24.67559 -22.32682 -20.41763 -20.16065 -18.09011 -16.85317 -16.03463 -15.38378 -14.78486 -14.52337 -14.37137 -14.07386 -13.77713 -13.22587 -13.14075 -12.75708 -12.59732 -12.20366 -12.12779 -11.84183 -11.70286 -11.60486 -11.40031 -11.14628 -11.04633 -10.99562 -10.90695 -10.70648 -10.47567 -10.27456 -10.13249 -9.90004 -9.02483 -8.35491 -8.22700 -8.15439 -7.24818 -5.97770 -4.00973 1.27191 1.90092 2.35060 2.99026 3.34137 3.40018 3.44715 4.45576 4.49702 4.73167 4.81782 5.15795 5.17586 5.33901 5.41651 5.44764 5.55470 5.60072 5.62141 5.68211 5.70177 5.76485 5.85201 5.97319 5.99306 6.12007 6.15181 6.17434 6.45278 6.55654 6.67510 6.79065 6.84235 7.08032 7.33721 7.73685 7.88639 8.26078 8.52222 8.59990 9.06312 9.64340 11.09315 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.033065 B = 0.003836 C = 0.003643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.608284 B = 7296.835626 C = 7685.069333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.211 3.789 3 H 0.034 0.966 4 C -0.494 4.494 5 H 0.063 0.937 6 C 0.055 3.945 7 N -0.898 5.898 8 Si 0.898 3.102 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.677 5.677 13 C 0.124 3.876 14 C -0.152 4.152 15 C -0.150 4.150 16 C -0.132 4.132 17 C -0.184 4.184 18 C 0.006 3.994 19 C -0.135 4.135 20 C -0.150 4.150 21 C -0.136 4.136 22 S 0.120 5.880 23 H 0.090 0.910 24 H 0.028 0.972 25 H 0.005 0.995 26 H 0.259 0.741 27 H 0.328 0.672 28 H 0.039 0.961 29 H 0.074 0.926 30 H 0.132 0.868 31 H 0.129 0.871 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.800 -4.560 -19.352 20.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.103 3.897 3 H 0.052 0.948 4 C -0.533 4.533 5 H 0.081 0.919 6 C -0.145 4.145 7 N -0.538 5.538 8 Si 0.726 3.274 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.307 5.307 13 C -0.007 4.007 14 C -0.270 4.270 15 C -0.181 4.181 16 C -0.163 4.163 17 C -0.302 4.302 18 C 0.004 3.996 19 C -0.193 4.193 20 C -0.208 4.208 21 C -0.194 4.194 22 S 0.387 5.613 23 H 0.108 0.892 24 H 0.047 0.953 25 H 0.024 0.976 26 H 0.069 0.931 27 H 0.145 0.855 28 H 0.056 0.944 29 H 0.092 0.908 30 H 0.150 0.850 31 H 0.147 0.853 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.749 -3.807 -18.392 20.317 hybrid contribution -2.192 -0.807 0.155 2.341 sum 5.557 -4.614 -18.237 19.615 Atomic orbital electron populations 1.22437 1.00624 0.99263 1.00525 1.19209 0.89675 0.94469 0.86336 0.94811 1.21149 1.30171 1.12472 0.89510 0.91898 1.24949 0.95317 0.95229 0.99041 1.69881 1.37341 1.23240 1.23350 0.86496 0.78444 0.80058 0.82387 1.20740 1.21418 1.19911 1.60887 1.58392 1.08802 1.02654 1.20399 0.98483 0.94579 0.87202 1.24690 0.95881 1.05159 1.01234 1.20008 1.00802 1.01505 0.95760 1.19858 0.92836 1.03216 1.00375 1.24470 0.97548 1.06958 1.01191 1.19029 0.92805 0.95233 0.92581 1.21879 1.01610 1.01102 0.94696 1.21974 0.95004 1.01893 1.01939 1.21885 1.01878 0.93481 1.02137 1.84234 1.07308 1.50416 1.19373 0.89171 0.95283 0.97625 0.93068 0.85529 0.94357 0.90796 0.85035 0.85291 0.92435 0.92346 0.92413 0.91932 0.91894 0.92133 0.92396 0.92363 0.92238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.08 8.94 37.16 0.33 -3.75 16 2 C 0.21 5.34 2.57 -68.86 -0.18 5.16 16 3 H 0.03 0.93 7.80 -51.93 -0.40 0.53 16 4 C -0.49 -13.84 8.84 -34.44 -0.30 -14.14 16 5 H 0.06 1.79 7.81 -52.49 -0.41 1.38 16 6 C 0.05 1.54 5.30 -17.82 -0.09 1.44 16 7 N -0.90 -25.84 11.32 55.43 0.63 -25.21 16 8 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 9 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 12 N -0.68 -14.71 6.22 -109.22 -0.68 -15.38 16 13 C 0.12 2.31 5.97 -4.98 -0.03 2.28 16 14 C -0.15 -2.47 6.02 -36.00 -0.22 -2.69 16 15 C -0.15 -2.20 10.05 -41.21 -0.41 -2.61 16 16 C -0.13 -1.71 9.31 -41.21 -0.38 -2.10 16 17 C -0.18 -2.34 5.13 -36.00 -0.18 -2.52 16 18 C 0.01 0.06 0.91 -155.66 -0.14 -0.09 16 19 C -0.13 -1.16 8.33 37.15 0.31 -0.85 16 20 C -0.15 -1.43 7.56 37.16 0.28 -1.15 16 21 C -0.14 -1.24 8.34 37.16 0.31 -0.93 16 22 S 0.12 1.77 21.82 -107.50 -2.35 -0.57 16 23 H 0.09 2.41 6.07 -51.93 -0.32 2.09 16 24 H 0.03 0.67 8.13 -51.93 -0.42 0.25 16 25 H 0.00 0.10 7.45 -51.93 -0.39 -0.28 16 26 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 27 H 0.33 6.88 8.46 -39.29 -0.33 6.55 16 28 H 0.04 0.70 7.44 -51.93 -0.39 0.31 16 29 H 0.07 1.41 8.06 -51.93 -0.42 0.99 16 30 H 0.13 1.79 8.06 -52.49 -0.42 1.36 16 31 H 0.13 1.41 8.01 -52.49 -0.42 0.99 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.48 7.94 -51.93 -0.41 0.07 16 35 H 0.06 0.64 7.97 -51.93 -0.41 0.23 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.59 7.95 -51.93 -0.41 0.17 16 38 H 0.06 0.51 7.94 -51.93 -0.41 0.10 16 39 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 335.60 15.07 5.06 5.06 Total: -1.00 -28.62 335.60 -9.90 -38.52 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -6.82 Total: 2.86 kcal Atomic # 6 Polarization: -21.23 SS G_CDS: -0.71 Total: -21.94 kcal Atomic # 7 Polarization: -40.55 SS G_CDS: -0.05 Total: -40.60 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: 1.77 SS G_CDS: -2.35 Total: -0.57 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -28.62 -9.90 -38.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134971086.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.051 kcal (2) G-P(sol) polarization free energy of solvation -28.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds