Wall clock time and date at job start Mon Mar 30 2020 06:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47155 * 89.99872 * 8 6 4 10 10 H 1.48499 * 109.47102 * 210.00327 * 8 6 4 11 11 H 1.48499 * 109.46909 * 330.00049 * 8 6 4 12 12 N 1.46906 * 109.47302 * 240.00536 * 2 1 3 13 13 C 1.46897 * 111.00172 * 84.99810 * 12 2 1 14 14 C 1.50697 * 109.46908 * 180.02562 * 13 12 2 15 15 C 1.33391 * 125.20661 * 90.00234 * 14 13 12 16 16 C 1.38428 * 114.92134 * 179.97438 * 15 14 13 17 17 C 1.33389 * 114.91807 * 0.02562 * 16 15 14 18 18 C 1.50701 * 125.19912 * 180.02562 * 17 16 15 19 19 C 1.52991 * 109.47497 * 59.99302 * 18 17 16 20 20 C 1.53000 * 109.47252 * 179.97438 * 18 17 16 21 21 C 1.53007 * 109.47020 * 299.99255 * 18 17 16 22 22 S 1.75881 * 109.59680 * 359.75231 * 17 16 15 23 23 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 24 24 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 26 26 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 27 27 H 1.00899 * 110.99467 * 321.04346 * 12 2 1 28 28 H 1.09005 * 109.47066 * 299.99968 * 13 12 2 29 29 H 1.09001 * 109.47085 * 59.99954 * 13 12 2 30 30 H 1.08001 * 122.53763 * 359.95293 * 15 14 13 31 31 H 1.07991 * 122.53698 * 180.02562 * 16 15 14 32 32 H 1.08999 * 109.47064 * 60.00262 * 19 18 17 33 33 H 1.09005 * 109.47582 * 180.02562 * 19 18 17 34 34 H 1.09001 * 109.47762 * 300.00493 * 19 18 17 35 35 H 1.09003 * 109.47153 * 59.99600 * 20 18 17 36 36 H 1.08999 * 109.47647 * 179.97438 * 20 18 17 37 37 H 1.09003 * 109.46859 * 299.99992 * 20 18 17 38 38 H 1.09007 * 109.46786 * 60.00394 * 21 18 17 39 39 H 1.08996 * 109.47046 * 180.02562 * 21 18 17 40 40 H 1.08996 * 109.47260 * 300.00698 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.6298 -0.5460 4.4123 10 1 1.3432 -0.9495 5.1120 11 1 2.4860 -2.5663 3.7118 12 7 2.0197 -0.6924 -1.1995 13 6 2.0825 0.2227 -2.3469 14 6 2.5874 -0.5216 -3.5560 15 6 1.8212 -1.1643 -4.4388 16 6 2.5097 -1.7770 -5.4717 17 6 3.8350 -1.6323 -5.4273 18 6 4.8049 -2.2006 -6.4309 19 6 4.4924 -1.6366 -7.8183 20 6 6.2321 -1.8172 -6.0347 21 6 4.6751 -3.7249 -6.4590 22 16 4.2767 -0.6701 -4.0228 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 -0.8900 26 1 0.7096 1.1617 3.4844 27 1 1.4496 -1.4978 -1.4101 28 1 1.0870 0.6164 -2.5525 29 1 2.7588 1.0463 -2.1182 30 1 0.7453 -1.2040 -4.3539 31 1 2.0116 -2.3302 -6.2540 32 1 4.5849 -0.5508 -7.7984 33 1 5.1937 -2.0481 -8.5443 34 1 3.4756 -1.9094 -8.1009 35 1 6.4550 -2.2187 -5.0461 36 1 6.9337 -2.2286 -6.7603 37 1 6.3243 -0.7312 -6.0149 38 1 3.6583 -3.9978 -6.7416 39 1 5.3770 -4.1361 -7.1845 40 1 4.8977 -4.1268 -5.4705 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134971086.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:55 Heat of formation + Delta-G solvation = -4.739969 kcal Electronic energy + Delta-G solvation = -17862.654782 eV Core-core repulsion = 15188.498432 eV Total energy + Delta-G solvation = -2674.156349 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.63015 -38.17523 -36.74696 -34.52565 -31.69353 -28.94592 -28.23855 -28.07662 -27.26063 -26.05786 -23.61215 -22.19337 -21.30138 -19.23121 -18.43504 -17.59612 -16.77520 -16.40315 -16.04456 -15.40828 -15.16273 -14.96068 -14.76521 -14.41236 -13.88293 -13.84273 -13.49956 -13.45905 -13.09080 -12.84637 -12.82797 -12.73633 -12.55383 -12.54774 -12.34221 -12.18185 -11.99585 -11.91218 -11.82571 -11.78672 -11.29576 -11.08110 -10.50025 -9.39962 -9.29969 -8.98956 -8.10929 -6.22422 0.14081 0.77436 1.22872 1.42679 1.43040 1.54200 1.88847 2.43702 3.17254 3.64307 3.69580 3.97703 4.05197 4.07544 4.30269 4.37988 4.58070 4.69056 4.69570 4.76422 4.79576 4.82439 4.86713 4.90015 5.02650 5.03582 5.06154 5.10340 5.22881 5.27045 5.37010 5.45507 5.46199 5.47876 5.67078 5.70596 5.78941 6.24088 6.59769 6.75220 6.91311 7.47469 8.94545 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.033065 B = 0.003836 C = 0.003643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.608284 B = 7296.835626 C = 7685.069333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.215 3.785 3 H 0.003 0.997 4 C -0.516 4.516 5 H 0.053 0.947 6 C 0.010 3.990 7 N -0.922 5.922 8 Si 0.961 3.039 9 H -0.278 1.278 10 H -0.282 1.282 11 H -0.269 1.269 12 N -0.681 5.681 13 C 0.133 3.867 14 C -0.186 4.186 15 C -0.137 4.137 16 C -0.142 4.142 17 C -0.165 4.165 18 C 0.002 3.998 19 C -0.132 4.132 20 C -0.151 4.151 21 C -0.134 4.134 22 S 0.095 5.905 23 H 0.063 0.937 24 H 0.032 0.968 25 H 0.026 0.974 26 H 0.262 0.738 27 H 0.333 0.667 28 H 0.042 0.958 29 H 0.060 0.940 30 H 0.142 0.858 31 H 0.156 0.844 32 H 0.050 0.950 33 H 0.078 0.922 34 H 0.062 0.938 35 H 0.049 0.951 36 H 0.084 0.916 37 H 0.054 0.946 38 H 0.062 0.938 39 H 0.078 0.922 40 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.158 -6.042 -21.082 22.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.107 3.893 3 H 0.021 0.979 4 C -0.555 4.555 5 H 0.071 0.929 6 C -0.189 4.189 7 N -0.562 5.562 8 Si 0.787 3.213 9 H -0.203 1.203 10 H -0.207 1.207 11 H -0.194 1.194 12 N -0.311 5.311 13 C 0.002 3.998 14 C -0.303 4.303 15 C -0.168 4.168 16 C -0.172 4.172 17 C -0.283 4.283 18 C 0.000 4.000 19 C -0.190 4.190 20 C -0.209 4.209 21 C -0.192 4.192 22 S 0.361 5.639 23 H 0.082 0.918 24 H 0.052 0.948 25 H 0.045 0.955 26 H 0.071 0.929 27 H 0.150 0.850 28 H 0.060 0.940 29 H 0.078 0.922 30 H 0.160 0.840 31 H 0.173 0.827 32 H 0.069 0.931 33 H 0.097 0.903 34 H 0.081 0.919 35 H 0.068 0.932 36 H 0.103 0.897 37 H 0.073 0.927 38 H 0.081 0.919 39 H 0.097 0.903 40 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 8.107 -5.289 -20.136 22.342 hybrid contribution -2.268 -0.355 0.582 2.368 sum 5.840 -5.645 -19.554 21.174 Atomic orbital electron populations 1.22232 0.99699 0.99351 1.00216 1.18970 0.90277 0.92747 0.87318 0.97917 1.21426 1.30515 1.12515 0.91046 0.92885 1.25712 0.95398 0.95888 1.01859 1.70003 1.37955 1.24227 1.24058 0.85508 0.77970 0.79034 0.78808 1.20337 1.20709 1.19409 1.60733 1.58174 1.09308 1.02897 1.20230 0.98496 0.93961 0.87085 1.24420 0.96900 1.07526 1.01498 1.20267 1.01377 0.99909 0.95264 1.20079 0.92877 1.03556 1.00675 1.24915 0.98209 1.05038 1.00113 1.19215 0.92236 0.95926 0.92608 1.21868 1.02536 1.00707 0.93878 1.21990 0.95328 1.01611 1.01947 1.21885 1.02834 0.92430 1.02051 1.84298 1.06900 1.51561 1.21117 0.91798 0.94847 0.95488 0.92927 0.85007 0.93999 0.92194 0.84016 0.82652 0.93095 0.90334 0.91907 0.93159 0.89707 0.92699 0.91908 0.90263 0.93576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.57 8.94 71.98 0.64 -6.93 16 2 C 0.22 11.17 2.57 44.17 0.11 11.28 16 3 H 0.00 0.17 7.80 -2.39 -0.02 0.15 16 4 C -0.52 -29.40 8.84 25.60 0.23 -29.18 16 5 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 6 C 0.01 0.54 5.30 84.66 0.45 0.99 16 7 N -0.92 -53.78 11.32 21.45 0.24 -53.53 16 8 Si 0.96 44.66 29.54 68.60 2.03 46.69 16 9 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 10 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 11 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 12 N -0.68 -30.05 6.22 -499.47 -3.11 -33.16 16 13 C 0.13 5.02 5.97 85.56 0.51 5.53 16 14 C -0.19 -6.03 6.02 24.59 0.15 -5.88 16 15 C -0.14 -3.82 10.05 21.22 0.21 -3.60 16 16 C -0.14 -3.36 9.31 21.22 0.20 -3.17 16 17 C -0.17 -3.91 5.13 24.59 0.13 -3.79 16 18 C 0.00 0.04 0.91 -52.93 -0.05 -0.01 16 19 C -0.13 -1.85 8.33 71.98 0.60 -1.25 16 20 C -0.15 -2.59 7.56 71.98 0.54 -2.05 16 21 C -0.13 -2.06 8.34 71.98 0.60 -1.46 16 22 S 0.09 2.79 21.82 -56.49 -1.23 1.56 16 23 H 0.06 3.46 6.07 -2.39 -0.01 3.45 16 24 H 0.03 1.54 8.13 -2.39 -0.02 1.52 16 25 H 0.03 1.15 7.45 -2.38 -0.02 1.13 16 26 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 27 H 0.33 14.00 8.46 -89.69 -0.76 13.24 16 28 H 0.04 1.53 7.44 -2.38 -0.02 1.51 16 29 H 0.06 2.38 8.06 -2.39 -0.02 2.37 16 30 H 0.14 3.59 8.06 -2.91 -0.02 3.57 16 31 H 0.16 2.86 8.01 -2.92 -0.02 2.84 16 32 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 34 H 0.06 0.83 7.94 -2.39 -0.02 0.81 16 35 H 0.05 0.98 7.97 -2.39 -0.02 0.96 16 36 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.05 1.00 7.95 -2.39 -0.02 0.98 16 38 H 0.06 0.91 7.94 -2.38 -0.02 0.89 16 39 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -61.45 335.60 2.49 -58.96 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: 0.24 Total: 18.99 kcal Atomic # 6 Polarization: -43.83 SS G_CDS: 4.32 Total: -39.50 kcal Atomic # 7 Polarization: -83.82 SS G_CDS: -2.86 Total: -86.69 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Atomic # 16 Polarization: 2.79 SS G_CDS: -1.23 Total: 1.56 kcal Total: -61.45 2.49 -58.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134971086.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.215 kcal (2) G-P(sol) polarization free energy of solvation -61.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds