Wall clock time and date at job start Mon Mar 30 2020 06:32:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47546 * 2 1 4 4 C 1.50701 * 109.47087 * 239.99658 * 2 1 3 5 5 H 1.07998 * 120.00017 * 245.62912 * 4 2 1 6 6 C 1.37879 * 119.99948 * 65.63404 * 4 2 1 7 7 N 1.31512 * 119.99702 * 197.49604 * 6 4 2 8 8 Si 1.86799 * 119.99866 * 17.48889 * 6 4 2 9 9 H 1.48503 * 109.46807 * 180.02562 * 8 6 4 10 10 H 1.48497 * 109.47152 * 300.00191 * 8 6 4 11 11 H 1.48496 * 109.47233 * 60.00607 * 8 6 4 12 12 N 1.46901 * 109.47114 * 120.00020 * 2 1 3 13 13 C 1.46907 * 110.99828 * 274.99891 * 12 2 1 14 14 C 1.50703 * 109.46985 * 179.97438 * 13 12 2 15 15 C 1.33386 * 125.20403 * 90.00360 * 14 13 12 16 16 C 1.38421 * 114.92327 * 179.97438 * 15 14 13 17 17 C 1.33392 * 114.91964 * 359.97438 * 16 15 14 18 18 C 1.50697 * 125.20261 * 180.02562 * 17 16 15 19 19 C 1.52996 * 109.47115 * 60.00193 * 18 17 16 20 20 C 1.53000 * 109.47122 * 179.97438 * 18 17 16 21 21 C 1.52994 * 109.47443 * 299.99940 * 18 17 16 22 22 S 1.75878 * 125.20108 * 269.69473 * 14 13 12 23 23 H 1.09005 * 109.47063 * 66.34513 * 1 2 3 24 24 H 1.08997 * 109.47071 * 186.34545 * 1 2 3 25 25 H 1.09001 * 109.47042 * 306.34451 * 1 2 3 26 26 H 0.96998 * 120.00576 * 354.88696 * 7 6 4 27 27 H 1.00897 * 110.99986 * 38.94846 * 12 2 1 28 28 H 1.08995 * 109.46866 * 299.99720 * 13 12 2 29 29 H 1.09000 * 109.46816 * 59.99878 * 13 12 2 30 30 H 1.08000 * 122.53558 * 359.94965 * 15 14 13 31 31 H 1.07993 * 122.54086 * 180.02562 * 16 15 14 32 32 H 1.09001 * 109.47212 * 59.99555 * 19 18 17 33 33 H 1.08996 * 109.47462 * 180.02562 * 19 18 17 34 34 H 1.08999 * 109.47456 * 299.99710 * 19 18 17 35 35 H 1.09000 * 109.47061 * 60.00169 * 20 18 17 36 36 H 1.08999 * 109.47418 * 180.02562 * 20 18 17 37 37 H 1.09002 * 109.47520 * 300.00394 * 20 18 17 38 38 H 1.09002 * 109.47213 * 60.00130 * 21 18 17 39 39 H 1.08996 * 109.47275 * 179.97438 * 21 18 17 40 40 H 1.09007 * 109.47345 * 300.00197 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.5762 -1.6385 -1.1339 6 6 1.7976 -0.1757 -2.4794 7 7 1.9165 -0.9296 -3.5504 8 14 1.3107 1.6197 -2.6502 9 1 1.1167 1.9454 -4.0860 10 1 0.0447 1.8615 -1.9127 11 1 2.3832 2.4791 -2.0878 12 7 2.0197 -0.6925 1.1994 13 6 2.0825 0.2227 2.3469 14 6 2.5873 -0.5218 3.5561 15 6 3.8688 -0.6387 3.9074 16 6 4.0929 -1.3706 5.0607 17 6 2.9934 -1.8476 5.6463 18 6 2.9688 -2.6711 6.9081 19 6 3.5886 -1.8681 8.0534 20 6 1.5219 -3.0244 7.2583 21 6 3.7706 -3.9564 6.6941 22 16 1.5764 -1.3628 4.7240 23 1 -0.3633 0.4123 -0.9414 24 1 -0.3633 -1.0213 0.1136 25 1 -0.3633 0.6090 0.8278 26 1 2.2406 -1.8402 -3.4691 27 1 1.4495 -1.4978 1.4101 28 1 2.7589 1.0462 2.1182 29 1 1.0870 0.6164 2.5525 30 1 4.6707 -0.1962 3.3351 31 1 5.0829 -1.5417 5.4569 32 1 3.0173 -0.9524 8.2059 33 1 3.5712 -2.4639 8.9660 34 1 4.6194 -1.6160 7.8042 35 1 1.0799 -3.5964 6.4425 36 1 1.5040 -3.6197 8.1712 37 1 0.9509 -2.1086 7.4110 38 1 4.8014 -3.7044 6.4448 39 1 3.7531 -4.5518 7.6069 40 1 3.3290 -4.5286 5.8781 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134971108.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:58 Heat of formation + Delta-G solvation = 12.085709 kcal Electronic energy + Delta-G solvation = -17916.278596 eV Core-core repulsion = 15242.851863 eV Total energy + Delta-G solvation = -2673.426733 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.69530 -36.88044 -35.55710 -32.61022 -30.50160 -27.87328 -27.55101 -27.45758 -25.11861 -24.45112 -22.40752 -20.47224 -19.94908 -18.30813 -17.41033 -16.56901 -15.56910 -14.75541 -14.47299 -14.33162 -14.12922 -13.90546 -13.62702 -12.97977 -12.88318 -12.62725 -12.39804 -12.13886 -11.94026 -11.90679 -11.81103 -11.75262 -11.49956 -11.15864 -11.09753 -11.04408 -10.83860 -10.47023 -10.37235 -9.97179 -9.72243 -8.97051 -8.32145 -8.27627 -8.16856 -7.45552 -6.39518 -3.98201 1.17665 1.76981 2.19002 2.95058 3.37758 3.43469 3.60577 4.42198 4.50920 4.66348 4.74779 5.04299 5.11053 5.28396 5.31081 5.35318 5.39434 5.53670 5.57893 5.62522 5.64540 5.71479 5.79032 5.81749 5.90929 6.03715 6.06813 6.09401 6.27000 6.37647 6.41481 6.53659 6.61741 6.73644 6.83354 7.19158 7.77159 8.25269 8.32126 8.49616 9.05907 9.69173 11.00081 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.040330 B = 0.003815 C = 0.003785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.099060 B = 7338.563239 C = 7396.662140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.187 3.813 3 H 0.027 0.973 4 C -0.582 4.582 5 H 0.062 0.938 6 C 0.026 3.974 7 N -0.910 5.910 8 Si 1.045 2.955 9 H -0.285 1.285 10 H -0.277 1.277 11 H -0.284 1.284 12 N -0.666 5.666 13 C 0.124 3.876 14 C -0.159 4.159 15 C -0.128 4.128 16 C -0.131 4.131 17 C -0.174 4.174 18 C 0.005 3.995 19 C -0.135 4.135 20 C -0.150 4.150 21 C -0.136 4.136 22 S 0.086 5.914 23 H 0.061 0.939 24 H 0.044 0.956 25 H 0.019 0.981 26 H 0.267 0.733 27 H 0.330 0.670 28 H 0.084 0.916 29 H 0.029 0.971 30 H 0.138 0.862 31 H 0.132 0.868 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.063 -1.324 23.139 23.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.078 3.922 3 H 0.045 0.955 4 C -0.620 4.620 5 H 0.081 0.919 6 C -0.178 4.178 7 N -0.545 5.545 8 Si 0.874 3.126 9 H -0.211 1.211 10 H -0.204 1.204 11 H -0.210 1.210 12 N -0.296 5.296 13 C -0.008 4.008 14 C -0.276 4.276 15 C -0.158 4.158 16 C -0.162 4.162 17 C -0.291 4.291 18 C 0.003 3.997 19 C -0.193 4.193 20 C -0.207 4.207 21 C -0.194 4.194 22 S 0.352 5.648 23 H 0.080 0.920 24 H 0.064 0.936 25 H 0.038 0.962 26 H 0.077 0.923 27 H 0.147 0.853 28 H 0.102 0.898 29 H 0.047 0.953 30 H 0.156 0.844 31 H 0.150 0.850 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.293 -0.294 21.969 21.973 hybrid contribution 1.064 -0.862 1.081 1.745 sum 0.771 -1.156 23.050 23.092 Atomic orbital electron populations 1.22911 1.01087 0.99969 1.00153 1.19553 0.89074 0.94576 0.88950 0.95537 1.21957 1.39544 1.10293 0.90208 0.91946 1.25696 0.95068 1.04922 0.92121 1.70848 1.42295 1.09906 1.31406 0.84044 0.76866 0.75638 0.76029 1.21111 1.20357 1.21022 1.60821 1.58151 1.08510 1.02143 1.20480 0.98517 0.94727 0.87047 1.24606 0.96552 1.05534 1.00908 1.20040 0.96325 1.01965 0.97470 1.19960 0.98786 1.00770 0.96687 1.24386 0.95929 1.06958 1.01857 1.19047 0.96418 0.93908 0.90342 1.21882 1.00864 0.99798 0.96768 1.21970 0.94898 1.01947 1.01934 1.21889 0.99934 0.95844 1.01759 1.84127 1.10286 1.51193 1.19213 0.91996 0.93639 0.96209 0.92255 0.85285 0.89783 0.95307 0.84433 0.84990 0.92437 0.92269 0.92314 0.92034 0.91815 0.92184 0.92284 0.92280 0.92251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.01 8.85 37.16 0.33 -3.68 16 2 C 0.19 4.50 2.16 -68.86 -0.15 4.35 16 3 H 0.03 0.65 6.45 -51.93 -0.34 0.31 16 4 C -0.58 -16.63 9.10 -34.44 -0.31 -16.94 16 5 H 0.06 1.96 8.06 -52.49 -0.42 1.54 16 6 C 0.03 0.77 5.29 -17.82 -0.09 0.67 16 7 N -0.91 -28.25 13.70 55.43 0.76 -27.49 16 8 Si 1.05 25.29 26.29 -169.99 -4.47 20.82 16 9 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 10 H -0.28 -6.17 5.76 56.52 0.33 -5.85 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 N -0.67 -14.18 6.22 -109.21 -0.68 -14.86 16 13 C 0.12 2.19 5.97 -4.97 -0.03 2.16 16 14 C -0.16 -2.51 6.02 -36.00 -0.22 -2.72 16 15 C -0.13 -1.89 10.05 -41.21 -0.41 -2.31 16 16 C -0.13 -1.69 9.31 -41.21 -0.38 -2.07 16 17 C -0.17 -2.13 5.13 -36.00 -0.18 -2.32 16 18 C 0.00 0.05 0.91 -155.67 -0.14 -0.09 16 19 C -0.13 -1.11 8.33 37.16 0.31 -0.80 16 20 C -0.15 -1.34 7.56 37.16 0.28 -1.06 16 21 C -0.14 -1.21 8.34 37.15 0.31 -0.90 16 22 S 0.09 1.18 21.82 -107.50 -2.35 -1.17 16 23 H 0.06 1.43 4.88 -51.93 -0.25 1.17 16 24 H 0.04 0.98 8.01 -51.93 -0.42 0.56 16 25 H 0.02 0.37 7.62 -51.93 -0.40 -0.02 16 26 H 0.27 8.31 8.73 -40.82 -0.36 7.95 16 27 H 0.33 6.87 8.38 -39.29 -0.33 6.54 16 28 H 0.08 1.47 8.05 -51.93 -0.42 1.06 16 29 H 0.03 0.49 7.56 -51.93 -0.39 0.10 16 30 H 0.14 1.98 8.06 -52.49 -0.42 1.56 16 31 H 0.13 1.44 8.01 -52.49 -0.42 1.02 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.47 7.94 -51.93 -0.41 0.06 16 35 H 0.06 0.59 7.96 -51.93 -0.41 0.18 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.55 7.95 -51.93 -0.41 0.13 16 38 H 0.06 0.52 7.94 -51.93 -0.41 0.10 16 39 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 LS Contribution 331.36 15.07 4.99 4.99 Total: -1.00 -30.24 331.36 -9.24 -39.48 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -6.80 Total: 3.95 kcal Atomic # 6 Polarization: -25.03 SS G_CDS: -0.70 Total: -25.73 kcal Atomic # 7 Polarization: -42.43 SS G_CDS: 0.08 Total: -42.35 kcal Atomic # 14 Polarization: 25.29 SS G_CDS: -4.47 Total: 20.82 kcal Atomic # 16 Polarization: 1.18 SS G_CDS: -2.35 Total: -1.17 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.24 -9.24 -39.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134971108.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.568 kcal (2) G-P(sol) polarization free energy of solvation -30.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds