Wall clock time and date at job start Mon Mar 30 2020 06:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47546 * 2 1 4 4 C 1.50701 * 109.47087 * 239.99658 * 2 1 3 5 5 H 1.07998 * 120.00017 * 245.62912 * 4 2 1 6 6 C 1.37879 * 119.99948 * 65.63404 * 4 2 1 7 7 N 1.31512 * 119.99702 * 197.49604 * 6 4 2 8 8 Si 1.86799 * 119.99866 * 17.48889 * 6 4 2 9 9 H 1.48503 * 109.46807 * 180.02562 * 8 6 4 10 10 H 1.48497 * 109.47152 * 300.00191 * 8 6 4 11 11 H 1.48496 * 109.47233 * 60.00607 * 8 6 4 12 12 N 1.46901 * 109.47114 * 120.00020 * 2 1 3 13 13 C 1.46907 * 110.99828 * 274.99891 * 12 2 1 14 14 C 1.50703 * 109.46985 * 179.97438 * 13 12 2 15 15 C 1.33386 * 125.20403 * 90.00360 * 14 13 12 16 16 C 1.38421 * 114.92327 * 179.97438 * 15 14 13 17 17 C 1.33392 * 114.91964 * 359.97438 * 16 15 14 18 18 C 1.50697 * 125.20261 * 180.02562 * 17 16 15 19 19 C 1.52996 * 109.47115 * 60.00193 * 18 17 16 20 20 C 1.53000 * 109.47122 * 179.97438 * 18 17 16 21 21 C 1.52994 * 109.47443 * 299.99940 * 18 17 16 22 22 S 1.75878 * 125.20108 * 269.69473 * 14 13 12 23 23 H 1.09005 * 109.47063 * 66.34513 * 1 2 3 24 24 H 1.08997 * 109.47071 * 186.34545 * 1 2 3 25 25 H 1.09001 * 109.47042 * 306.34451 * 1 2 3 26 26 H 0.96998 * 120.00576 * 354.88696 * 7 6 4 27 27 H 1.00897 * 110.99986 * 38.94846 * 12 2 1 28 28 H 1.08995 * 109.46866 * 299.99720 * 13 12 2 29 29 H 1.09000 * 109.46816 * 59.99878 * 13 12 2 30 30 H 1.08000 * 122.53558 * 359.94965 * 15 14 13 31 31 H 1.07993 * 122.54086 * 180.02562 * 16 15 14 32 32 H 1.09001 * 109.47212 * 59.99555 * 19 18 17 33 33 H 1.08996 * 109.47462 * 180.02562 * 19 18 17 34 34 H 1.08999 * 109.47456 * 299.99710 * 19 18 17 35 35 H 1.09000 * 109.47061 * 60.00169 * 20 18 17 36 36 H 1.08999 * 109.47418 * 180.02562 * 20 18 17 37 37 H 1.09002 * 109.47520 * 300.00394 * 20 18 17 38 38 H 1.09002 * 109.47213 * 60.00130 * 21 18 17 39 39 H 1.08996 * 109.47275 * 179.97438 * 21 18 17 40 40 H 1.09007 * 109.47345 * 300.00197 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.5762 -1.6385 -1.1339 6 6 1.7976 -0.1757 -2.4794 7 7 1.9165 -0.9296 -3.5504 8 14 1.3107 1.6197 -2.6502 9 1 1.1167 1.9454 -4.0860 10 1 0.0447 1.8615 -1.9127 11 1 2.3832 2.4791 -2.0878 12 7 2.0197 -0.6925 1.1994 13 6 2.0825 0.2227 2.3469 14 6 2.5873 -0.5218 3.5561 15 6 3.8688 -0.6387 3.9074 16 6 4.0929 -1.3706 5.0607 17 6 2.9934 -1.8476 5.6463 18 6 2.9688 -2.6711 6.9081 19 6 3.5886 -1.8681 8.0534 20 6 1.5219 -3.0244 7.2583 21 6 3.7706 -3.9564 6.6941 22 16 1.5764 -1.3628 4.7240 23 1 -0.3633 0.4123 -0.9414 24 1 -0.3633 -1.0213 0.1136 25 1 -0.3633 0.6090 0.8278 26 1 2.2406 -1.8402 -3.4691 27 1 1.4495 -1.4978 1.4101 28 1 2.7589 1.0462 2.1182 29 1 1.0870 0.6164 2.5525 30 1 4.6707 -0.1962 3.3351 31 1 5.0829 -1.5417 5.4569 32 1 3.0173 -0.9524 8.2059 33 1 3.5712 -2.4639 8.9660 34 1 4.6194 -1.6160 7.8042 35 1 1.0799 -3.5964 6.4425 36 1 1.5040 -3.6197 8.1712 37 1 0.9509 -2.1086 7.4110 38 1 4.8014 -3.7044 6.4448 39 1 3.7531 -4.5518 7.6069 40 1 3.3290 -4.5286 5.8781 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134971108.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:57 Heat of formation + Delta-G solvation = -6.126406 kcal Electronic energy + Delta-G solvation = -17917.068332 eV Core-core repulsion = 15242.851863 eV Total energy + Delta-G solvation = -2674.216470 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.66432 -38.29113 -36.82876 -34.63317 -32.12965 -29.22640 -28.27862 -28.11167 -26.87848 -26.02501 -23.63871 -21.91908 -21.34455 -19.81303 -19.07781 -17.64167 -16.69814 -16.44415 -15.80632 -15.47908 -15.26238 -15.16061 -14.87155 -14.37370 -14.18646 -13.90578 -13.65755 -13.46845 -13.38596 -13.09189 -12.87965 -12.75850 -12.58552 -12.57830 -12.37880 -11.98736 -11.88410 -11.83453 -11.83112 -11.58716 -11.37045 -11.11301 -10.38477 -9.42960 -9.36288 -9.15406 -8.67573 -6.31728 0.08476 0.70007 1.10928 1.45137 1.53724 1.71998 1.85773 2.49689 3.08231 3.56281 3.62517 3.89906 3.96313 4.03975 4.26506 4.34800 4.41480 4.60204 4.65906 4.68654 4.71968 4.74858 4.76371 4.77535 4.86650 4.99400 5.00553 5.02658 5.06091 5.19212 5.27816 5.40678 5.42072 5.43029 5.47489 5.65447 5.82321 6.07333 6.36822 6.59245 6.73721 7.46460 8.66476 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.040330 B = 0.003815 C = 0.003785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.099060 B = 7338.563239 C = 7396.662140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.189 3.811 3 H 0.032 0.968 4 C -0.587 4.587 5 H 0.016 0.984 6 C -0.025 4.025 7 N -0.942 5.942 8 Si 1.086 2.914 9 H -0.289 1.289 10 H -0.242 1.242 11 H -0.265 1.265 12 N -0.681 5.681 13 C 0.130 3.870 14 C -0.191 4.191 15 C -0.128 4.128 16 C -0.145 4.145 17 C -0.160 4.160 18 C 0.002 3.998 19 C -0.132 4.132 20 C -0.150 4.150 21 C -0.135 4.135 22 S 0.091 5.909 23 H 0.052 0.948 24 H 0.041 0.959 25 H 0.053 0.947 26 H 0.250 0.750 27 H 0.330 0.670 28 H 0.082 0.918 29 H 0.039 0.961 30 H 0.136 0.864 31 H 0.153 0.847 32 H 0.052 0.948 33 H 0.078 0.922 34 H 0.060 0.940 35 H 0.050 0.950 36 H 0.084 0.916 37 H 0.056 0.944 38 H 0.059 0.941 39 H 0.079 0.921 40 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.597 -0.308 25.935 25.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.080 3.920 3 H 0.050 0.950 4 C -0.625 4.625 5 H 0.034 0.966 6 C -0.222 4.222 7 N -0.578 5.578 8 Si 0.907 3.093 9 H -0.215 1.215 10 H -0.166 1.166 11 H -0.191 1.191 12 N -0.311 5.311 13 C -0.001 4.001 14 C -0.308 4.308 15 C -0.159 4.159 16 C -0.174 4.174 17 C -0.278 4.278 18 C 0.000 4.000 19 C -0.190 4.190 20 C -0.208 4.208 21 C -0.193 4.193 22 S 0.356 5.644 23 H 0.071 0.929 24 H 0.060 0.940 25 H 0.071 0.929 26 H 0.059 0.941 27 H 0.147 0.853 28 H 0.100 0.900 29 H 0.057 0.943 30 H 0.154 0.846 31 H 0.171 0.829 32 H 0.071 0.929 33 H 0.097 0.903 34 H 0.079 0.921 35 H 0.070 0.930 36 H 0.103 0.897 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.098 0.902 40 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -0.760 0.707 24.802 24.824 hybrid contribution 1.292 -1.314 0.328 1.872 sum 0.532 -0.607 25.130 25.143 Atomic orbital electron populations 1.22747 0.99153 1.00492 1.00994 1.19371 0.90384 0.94109 0.88176 0.94968 1.22176 1.38672 1.08807 0.92844 0.96575 1.27214 0.94638 1.08623 0.91748 1.70989 1.44806 1.09430 1.32618 0.83561 0.78782 0.70548 0.76406 1.21540 1.16600 1.19056 1.60638 1.58227 1.09260 1.02942 1.20390 0.99139 0.94144 0.86395 1.24461 0.97452 1.07480 1.01456 1.20246 0.96040 1.01603 0.97981 1.20111 1.00032 1.00960 0.96313 1.24859 0.94978 1.05781 1.02154 1.19223 0.97265 0.94037 0.89494 1.21871 1.00674 0.99668 0.96820 1.21985 0.94216 1.02021 1.02563 1.21894 0.99626 0.95446 1.02361 1.84061 1.10686 1.50830 1.18789 0.92897 0.93988 0.92854 0.94125 0.85292 0.89971 0.94265 0.84649 0.82939 0.92884 0.90295 0.92098 0.93047 0.89713 0.92468 0.92167 0.90169 0.93577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -7.35 8.85 71.98 0.64 -6.72 16 2 C 0.19 8.93 2.16 44.17 0.10 9.03 16 3 H 0.03 1.50 6.45 -2.39 -0.02 1.49 16 4 C -0.59 -34.33 9.10 25.60 0.23 -34.10 16 5 H 0.02 1.05 8.06 -2.91 -0.02 1.03 16 6 C -0.03 -1.48 5.29 84.66 0.45 -1.03 16 7 N -0.94 -60.32 13.70 21.45 0.29 -60.03 16 8 Si 1.09 50.04 26.29 68.60 1.80 51.85 16 9 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 10 H -0.24 -9.75 5.76 99.48 0.57 -9.17 16 11 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 12 N -0.68 -28.85 6.22 -499.44 -3.11 -31.95 16 13 C 0.13 4.46 5.97 85.56 0.51 4.97 16 14 C -0.19 -5.89 6.02 24.59 0.15 -5.75 16 15 C -0.13 -3.68 10.05 21.21 0.21 -3.47 16 16 C -0.14 -3.48 9.31 21.22 0.20 -3.28 16 17 C -0.16 -3.65 5.13 24.59 0.13 -3.52 16 18 C 0.00 0.03 0.91 -52.93 -0.05 -0.01 16 19 C -0.13 -1.77 8.33 71.98 0.60 -1.17 16 20 C -0.15 -2.32 7.56 71.98 0.54 -1.78 16 21 C -0.14 -2.06 8.34 71.98 0.60 -1.46 16 22 S 0.09 2.37 21.82 -56.49 -1.23 1.14 16 23 H 0.05 2.30 4.88 -2.38 -0.01 2.29 16 24 H 0.04 1.76 8.01 -2.39 -0.02 1.74 16 25 H 0.05 1.88 7.62 -2.39 -0.02 1.86 16 26 H 0.25 16.34 8.73 -92.71 -0.81 15.53 16 27 H 0.33 13.79 8.38 -89.70 -0.75 13.03 16 28 H 0.08 2.80 8.05 -2.39 -0.02 2.78 16 29 H 0.04 1.26 7.56 -2.39 -0.02 1.24 16 30 H 0.14 3.85 8.06 -2.91 -0.02 3.83 16 31 H 0.15 2.98 8.01 -2.91 -0.02 2.96 16 32 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.06 0.80 7.94 -2.39 -0.02 0.78 16 35 H 0.05 0.90 7.96 -2.39 -0.02 0.88 16 36 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.06 0.92 7.95 -2.39 -0.02 0.90 16 38 H 0.06 0.91 7.94 -2.39 -0.02 0.89 16 39 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 Total: -1.00 -66.71 331.36 2.14 -64.56 By element: Atomic # 1 Polarization: 22.65 SS G_CDS: 0.08 Total: 22.73 kcal Atomic # 6 Polarization: -52.60 SS G_CDS: 4.31 Total: -48.29 kcal Atomic # 7 Polarization: -89.17 SS G_CDS: -2.81 Total: -91.98 kcal Atomic # 14 Polarization: 50.04 SS G_CDS: 1.80 Total: 51.85 kcal Atomic # 16 Polarization: 2.37 SS G_CDS: -1.23 Total: 1.14 kcal Total: -66.71 2.14 -64.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134971108.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.438 kcal (2) G-P(sol) polarization free energy of solvation -66.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds