Wall clock time and date at job start Mon Mar 30 2020 06:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47121 * 2 1 4 4 C 1.53002 * 109.47062 * 120.00324 * 2 1 3 5 5 C 1.53003 * 109.46888 * 64.99947 * 4 2 1 6 6 C 1.53001 * 109.46806 * 174.74702 * 5 4 2 7 7 H 1.09001 * 109.52073 * 305.67226 * 6 5 4 8 8 C 1.53272 * 109.56548 * 65.80349 * 6 5 4 9 9 C 1.53248 * 108.54865 * 175.51125 * 8 6 5 10 10 C 1.50582 * 109.21318 * 304.46470 * 9 8 6 11 11 O 1.21229 * 119.36104 * 209.06166 * 10 9 8 12 12 N 1.34145 * 121.28236 * 29.04590 * 10 9 8 13 13 C 1.46494 * 118.70719 * 179.44953 * 12 10 9 14 14 C 1.50708 * 109.46997 * 90.00013 * 13 12 10 15 15 H 1.08004 * 119.99491 * 359.97438 * 14 13 12 16 16 C 1.37867 * 120.00057 * 180.02562 * 14 13 12 17 17 N 1.31515 * 120.00353 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00143 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47165 * 89.99374 * 18 16 14 20 20 H 1.48503 * 109.47232 * 209.99910 * 18 16 14 21 21 H 1.48501 * 109.46812 * 329.99342 * 18 16 14 22 22 C 1.34141 * 122.58324 * 359.47047 * 12 10 9 23 23 O 1.21227 * 119.35904 * 180.54456 * 22 12 10 24 24 H 1.09003 * 109.47162 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47254 * 299.99628 * 1 2 3 26 26 H 1.08997 * 109.47233 * 59.99744 * 1 2 3 27 27 H 1.09006 * 109.46741 * 240.00399 * 2 1 3 28 28 H 1.09001 * 109.47108 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.47276 * 300.00230 * 3 2 1 30 30 H 1.09004 * 109.46753 * 60.00065 * 3 2 1 31 31 H 1.08993 * 109.46975 * 305.00092 * 4 2 1 32 32 H 1.09001 * 109.47071 * 184.99971 * 4 2 1 33 33 H 1.08997 * 109.47522 * 54.74721 * 5 4 2 34 34 H 1.08991 * 109.47486 * 294.74286 * 5 4 2 35 35 H 1.09002 * 109.58850 * 55.81878 * 8 6 5 36 36 H 1.09002 * 109.67337 * 295.25350 * 8 6 5 37 37 H 1.09004 * 109.52106 * 184.52739 * 9 8 6 38 38 H 1.08999 * 109.52329 * 64.40903 * 9 8 6 39 39 H 1.08996 * 109.47025 * 209.99499 * 13 12 10 40 40 H 1.08997 * 109.47250 * 330.00524 * 13 12 10 41 41 H 0.96995 * 120.00684 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6352 -2.1956 1.1878 6 6 2.2553 -2.9443 2.3692 7 1 3.3329 -2.7803 2.3792 8 6 1.6473 -2.4302 3.6789 9 6 2.1995 -3.2703 4.8355 10 6 1.9197 -4.7257 4.5686 11 8 1.7721 -5.4837 5.5030 12 7 1.8302 -5.1996 3.3168 13 6 1.5681 -6.6277 3.1221 14 6 0.0806 -6.8613 3.0583 15 1 -0.6012 -6.0291 3.1538 16 6 -0.4098 -8.1373 2.8793 17 7 0.4205 -9.1507 2.7636 18 14 -2.2535 -8.4268 2.7995 19 1 -2.7107 -8.3207 1.3906 20 1 -2.5647 -9.7822 3.3202 21 1 -2.9507 -7.4076 3.6243 22 6 1.9716 -4.4172 2.2364 23 8 1.8696 -4.9056 1.1315 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8901 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6054 -0.2619 2.1369 32 1 3.1263 -0.6444 1.2951 33 1 1.9909 -2.6315 0.2543 34 1 0.5494 -2.2765 1.2360 35 1 0.5623 -2.5277 3.6411 36 1 1.9187 -1.3845 3.8239 37 1 1.7166 -2.9712 5.7659 38 1 3.2752 -3.1152 4.9173 39 1 2.0279 -6.9577 2.1907 40 1 1.9889 -7.1911 3.9549 41 1 0.0756 -10.0484 2.6372 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000160113357.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:23 Heat of formation + Delta-G solvation = -103.900933 kcal Electronic energy + Delta-G solvation = -21056.865944 eV Core-core repulsion = 17935.656781 eV Total energy + Delta-G solvation = -3121.209162 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.93050 -38.20957 -37.22820 -35.09154 -34.36805 -32.51466 -31.03046 -27.67840 -27.35571 -27.05312 -24.05176 -23.28700 -22.27746 -21.15554 -19.99603 -17.94306 -16.76913 -16.62427 -16.16494 -15.53752 -15.27427 -14.59665 -14.41219 -14.28006 -13.99183 -13.76099 -13.57542 -13.20517 -12.80925 -12.65451 -12.36446 -12.18018 -11.87211 -11.78034 -11.48177 -11.28938 -11.19705 -11.02972 -10.83289 -10.77600 -10.66189 -10.54635 -10.38961 -10.28493 -9.83962 -9.35069 -9.26469 -8.45346 -8.42447 -6.05074 -4.08493 2.25526 3.33054 3.35744 3.38646 3.46937 3.62077 4.38007 4.45270 4.57102 4.70612 4.77857 4.81152 4.90357 4.93008 5.26291 5.29137 5.31602 5.43614 5.45117 5.48601 5.55429 5.59735 5.71705 5.76769 5.78297 5.83734 5.93921 5.98600 6.08934 6.12479 6.14444 6.33135 6.38870 6.67637 7.12000 7.36110 7.87377 7.93784 8.15570 8.42688 8.60742 8.91224 9.54495 11.05087 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.020431 B = 0.005193 C = 0.004579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.117752 B = 5390.531442 C = 6113.428592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.098 4.098 3 C -0.147 4.147 4 C -0.113 4.113 5 C -0.105 4.105 6 C -0.111 4.111 7 H 0.105 0.895 8 C -0.117 4.117 9 C -0.143 4.143 10 C 0.512 3.488 11 O -0.500 6.500 12 N -0.552 5.552 13 C 0.227 3.773 14 C -0.523 4.523 15 H 0.056 0.944 16 C 0.064 3.936 17 N -0.893 5.893 18 Si 0.901 3.099 19 H -0.279 1.279 20 H -0.284 1.284 21 H -0.274 1.274 22 C 0.516 3.484 23 O -0.494 6.494 24 H 0.060 0.940 25 H 0.053 0.947 26 H 0.050 0.950 27 H 0.070 0.930 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.053 0.947 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.105 0.895 38 H 0.101 0.899 39 H 0.052 0.948 40 H 0.051 0.949 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.441 20.590 -1.780 21.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.117 4.117 3 C -0.204 4.204 4 C -0.151 4.151 5 C -0.143 4.143 6 C -0.132 4.132 7 H 0.123 0.877 8 C -0.155 4.155 9 C -0.183 4.183 10 C 0.300 3.700 11 O -0.373 6.373 12 N -0.293 5.293 13 C 0.109 3.891 14 C -0.561 4.561 15 H 0.074 0.926 16 C -0.139 4.139 17 N -0.532 5.532 18 Si 0.729 3.271 19 H -0.205 1.205 20 H -0.210 1.210 21 H -0.199 1.199 22 C 0.304 3.696 23 O -0.366 6.366 24 H 0.079 0.921 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.089 0.911 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.098 0.902 34 H 0.089 0.911 35 H 0.095 0.905 36 H 0.105 0.895 37 H 0.123 0.877 38 H 0.119 0.881 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.314 19.711 -1.892 20.266 hybrid contribution -1.003 -0.320 -0.021 1.053 sum 3.312 19.391 -1.912 19.765 Atomic orbital electron populations 1.21904 0.95274 1.02262 1.01380 1.21130 0.96014 0.95882 0.98650 1.21843 1.00803 0.96219 1.01538 1.21694 1.00781 0.94762 0.97832 1.21518 1.01254 0.94028 0.97472 1.21533 1.02677 0.91703 0.97290 0.87661 1.21809 1.01612 1.00054 0.92022 1.21932 1.03891 0.91501 1.01026 1.20686 0.75833 0.90591 0.82847 1.90711 1.45016 1.59174 1.42372 1.46809 1.61877 1.14351 1.06254 1.19625 0.97891 0.72376 0.99216 1.21169 0.90886 0.93490 1.50603 0.92607 1.24879 0.98429 0.95675 0.94881 1.69925 1.34441 0.99533 1.49258 0.86442 0.84852 0.77558 0.78265 1.20486 1.20969 1.19888 1.20602 0.75797 0.88640 0.84562 1.90689 1.45371 1.75266 1.25291 0.92069 0.92804 0.93078 0.91121 0.92822 0.92945 0.92816 0.91686 0.91862 0.90226 0.91126 0.90455 0.89464 0.87688 0.88100 0.93030 0.93052 0.92617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 8.95 37.16 0.33 -1.00 16 2 C -0.10 -0.84 2.92 -90.62 -0.26 -1.10 16 3 C -0.15 -1.06 9.19 37.16 0.34 -0.72 16 4 C -0.11 -0.98 4.33 -26.73 -0.12 -1.09 16 5 C -0.10 -1.24 4.01 -26.73 -0.11 -1.35 16 6 C -0.11 -1.43 2.42 -91.68 -0.22 -1.65 16 7 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 8 C -0.12 -1.28 5.03 -26.46 -0.13 -1.41 16 9 C -0.14 -1.80 6.07 -27.81 -0.17 -1.96 16 10 C 0.51 10.13 7.47 -11.32 -0.08 10.04 16 11 O -0.50 -11.97 16.45 5.60 0.09 -11.87 16 12 N -0.55 -12.25 2.51 -117.07 -0.29 -12.54 16 13 C 0.23 6.26 4.71 -5.19 -0.02 6.24 16 14 C -0.52 -15.53 9.37 -34.44 -0.32 -15.85 16 15 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 16 C 0.06 1.89 5.46 -17.82 -0.10 1.79 16 17 N -0.89 -27.39 13.29 55.43 0.74 -26.66 16 18 Si 0.90 22.57 29.54 -169.99 -5.02 17.55 16 19 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 21 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 22 C 0.52 10.11 7.16 -11.32 -0.08 10.03 16 23 O -0.49 -11.52 15.38 5.60 0.09 -11.44 16 24 H 0.06 0.61 6.69 -51.93 -0.35 0.26 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.51 6.97 -51.93 -0.36 0.14 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.08 1.06 7.63 -51.93 -0.40 0.67 16 34 H 0.07 0.90 6.83 -51.93 -0.35 0.54 16 35 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.09 0.66 6.97 -51.93 -0.36 0.29 16 37 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.05 1.52 7.29 -51.93 -0.38 1.14 16 40 H 0.05 1.52 7.29 -51.93 -0.38 1.14 16 41 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 330.93 15.07 4.99 4.99 Total: -1.00 -34.88 330.93 -7.14 -42.01 By element: Atomic # 1 Polarization: 2.77 SS G_CDS: -6.77 Total: -4.01 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: -0.95 Total: 1.97 kcal Atomic # 7 Polarization: -39.64 SS G_CDS: 0.44 Total: -39.20 kcal Atomic # 8 Polarization: -23.49 SS G_CDS: 0.18 Total: -23.31 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -34.88 -7.14 -42.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160113357.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.888 kcal (2) G-P(sol) polarization free energy of solvation -34.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds