Wall clock time and date at job start Mon Mar 30 2020 06:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47121 * 2 1 4 4 C 1.53002 * 109.47062 * 120.00324 * 2 1 3 5 5 C 1.53003 * 109.46888 * 64.99947 * 4 2 1 6 6 C 1.53001 * 109.46806 * 174.74702 * 5 4 2 7 7 H 1.09001 * 109.52073 * 305.67226 * 6 5 4 8 8 C 1.53272 * 109.56548 * 65.80349 * 6 5 4 9 9 C 1.53248 * 108.54865 * 175.51125 * 8 6 5 10 10 C 1.50582 * 109.21318 * 304.46470 * 9 8 6 11 11 O 1.21229 * 119.36104 * 209.06166 * 10 9 8 12 12 N 1.34145 * 121.28236 * 29.04590 * 10 9 8 13 13 C 1.46494 * 118.70719 * 179.44953 * 12 10 9 14 14 C 1.50708 * 109.46997 * 90.00013 * 13 12 10 15 15 H 1.08004 * 119.99491 * 359.97438 * 14 13 12 16 16 C 1.37867 * 120.00057 * 180.02562 * 14 13 12 17 17 N 1.31515 * 120.00353 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00143 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47165 * 89.99374 * 18 16 14 20 20 H 1.48503 * 109.47232 * 209.99910 * 18 16 14 21 21 H 1.48501 * 109.46812 * 329.99342 * 18 16 14 22 22 C 1.34141 * 122.58324 * 359.47047 * 12 10 9 23 23 O 1.21227 * 119.35904 * 180.54456 * 22 12 10 24 24 H 1.09003 * 109.47162 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47254 * 299.99628 * 1 2 3 26 26 H 1.08997 * 109.47233 * 59.99744 * 1 2 3 27 27 H 1.09006 * 109.46741 * 240.00399 * 2 1 3 28 28 H 1.09001 * 109.47108 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.47276 * 300.00230 * 3 2 1 30 30 H 1.09004 * 109.46753 * 60.00065 * 3 2 1 31 31 H 1.08993 * 109.46975 * 305.00092 * 4 2 1 32 32 H 1.09001 * 109.47071 * 184.99971 * 4 2 1 33 33 H 1.08997 * 109.47522 * 54.74721 * 5 4 2 34 34 H 1.08991 * 109.47486 * 294.74286 * 5 4 2 35 35 H 1.09002 * 109.58850 * 55.81878 * 8 6 5 36 36 H 1.09002 * 109.67337 * 295.25350 * 8 6 5 37 37 H 1.09004 * 109.52106 * 184.52739 * 9 8 6 38 38 H 1.08999 * 109.52329 * 64.40903 * 9 8 6 39 39 H 1.08996 * 109.47025 * 209.99499 * 13 12 10 40 40 H 1.08997 * 109.47250 * 330.00524 * 13 12 10 41 41 H 0.96995 * 120.00684 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6352 -2.1956 1.1878 6 6 2.2553 -2.9443 2.3692 7 1 3.3329 -2.7803 2.3792 8 6 1.6473 -2.4302 3.6789 9 6 2.1995 -3.2703 4.8355 10 6 1.9197 -4.7257 4.5686 11 8 1.7721 -5.4837 5.5030 12 7 1.8302 -5.1996 3.3168 13 6 1.5681 -6.6277 3.1221 14 6 0.0806 -6.8613 3.0583 15 1 -0.6012 -6.0291 3.1538 16 6 -0.4098 -8.1373 2.8793 17 7 0.4205 -9.1507 2.7636 18 14 -2.2535 -8.4268 2.7995 19 1 -2.7107 -8.3207 1.3906 20 1 -2.5647 -9.7822 3.3202 21 1 -2.9507 -7.4076 3.6243 22 6 1.9716 -4.4172 2.2364 23 8 1.8696 -4.9056 1.1315 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8901 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6054 -0.2619 2.1369 32 1 3.1263 -0.6444 1.2951 33 1 1.9909 -2.6315 0.2543 34 1 0.5494 -2.2765 1.2360 35 1 0.5623 -2.5277 3.6411 36 1 1.9187 -1.3845 3.8239 37 1 1.7166 -2.9712 5.7659 38 1 3.2752 -3.1152 4.9173 39 1 2.0279 -6.9577 2.1907 40 1 1.9889 -7.1911 3.9549 41 1 0.0756 -10.0484 2.6372 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000160113357.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:22 Heat of formation + Delta-G solvation = -126.823643 kcal Electronic energy + Delta-G solvation = -21057.859947 eV Core-core repulsion = 17935.656781 eV Total energy + Delta-G solvation = -3122.203166 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.47658 -39.79224 -38.17801 -36.35554 -36.06786 -34.58945 -32.08210 -29.68235 -28.21145 -27.89182 -25.72361 -24.67442 -23.79036 -22.33753 -20.69259 -19.41435 -18.71521 -18.26407 -17.88508 -16.94532 -16.56539 -16.22056 -15.63604 -15.37385 -15.29431 -15.05143 -14.67154 -14.42179 -14.23092 -13.80285 -13.67224 -13.56044 -13.13689 -12.97925 -12.86250 -12.71472 -12.49230 -12.38350 -12.23694 -12.06982 -11.94004 -11.68582 -11.47311 -11.32497 -11.22670 -10.95124 -10.80524 -10.73311 -10.42792 -8.34222 -6.48109 0.70515 1.30088 1.34250 1.44139 1.86532 2.09422 2.33126 2.97176 3.15753 3.64030 3.67912 3.81658 4.08595 4.13799 4.18281 4.37136 4.44047 4.56846 4.65356 4.69479 4.77687 4.85062 4.89852 4.93822 4.98719 5.00275 5.03977 5.07386 5.10343 5.17724 5.22568 5.32473 5.37599 5.50202 5.54958 5.60375 5.65553 5.86827 6.25721 6.55232 6.87363 6.97970 7.22076 8.76660 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.020431 B = 0.005193 C = 0.004579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.117752 B = 5390.531442 C = 6113.428592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.101 4.101 3 C -0.143 4.143 4 C -0.104 4.104 5 C -0.101 4.101 6 C -0.097 4.097 7 H 0.142 0.858 8 C -0.109 4.109 9 C -0.126 4.126 10 C 0.502 3.498 11 O -0.554 6.554 12 N -0.567 5.567 13 C 0.242 3.758 14 C -0.545 4.545 15 H 0.050 0.950 16 C 0.007 3.993 17 N -0.927 5.927 18 Si 0.975 3.025 19 H -0.269 1.269 20 H -0.271 1.271 21 H -0.266 1.266 22 C 0.508 3.492 23 O -0.545 6.545 24 H 0.041 0.959 25 H 0.063 0.937 26 H 0.052 0.948 27 H 0.057 0.943 28 H 0.060 0.940 29 H 0.051 0.949 30 H 0.062 0.938 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.064 0.936 36 H 0.145 0.855 37 H 0.128 0.872 38 H 0.142 0.858 39 H 0.018 0.982 40 H 0.018 0.982 41 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.280 24.233 -0.913 24.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.119 4.119 3 C -0.200 4.200 4 C -0.141 4.141 5 C -0.139 4.139 6 C -0.117 4.117 7 H 0.160 0.840 8 C -0.146 4.146 9 C -0.165 4.165 10 C 0.295 3.705 11 O -0.430 6.430 12 N -0.307 5.307 13 C 0.121 3.879 14 C -0.584 4.584 15 H 0.068 0.932 16 C -0.192 4.192 17 N -0.566 5.566 18 Si 0.798 3.202 19 H -0.194 1.194 20 H -0.196 1.196 21 H -0.190 1.190 22 C 0.300 3.700 23 O -0.420 6.420 24 H 0.060 0.940 25 H 0.082 0.918 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.105 0.895 32 H 0.100 0.900 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.163 0.837 37 H 0.147 0.853 38 H 0.160 0.840 39 H 0.036 0.964 40 H 0.036 0.964 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.171 23.408 -1.023 23.799 hybrid contribution -0.905 -1.499 -0.334 1.782 sum 3.266 21.909 -1.357 22.193 Atomic orbital electron populations 1.21913 0.95818 1.01154 1.02034 1.21139 0.95589 0.96898 0.98302 1.21801 1.01215 0.94937 1.02042 1.21666 1.02034 0.91754 0.98644 1.21490 1.00201 0.96290 0.95887 1.21698 1.05125 0.85707 0.99198 0.84006 1.21907 1.00708 1.02527 0.89453 1.22074 1.06781 0.85087 1.02597 1.22288 0.73692 0.93655 0.80882 1.90680 1.47428 1.61394 1.43528 1.46963 1.62609 1.12447 1.08638 1.18936 0.96662 0.76326 0.95975 1.21437 0.91781 0.93852 1.51282 0.93155 1.25923 1.04051 0.95242 0.93988 1.70049 1.36912 1.00117 1.49527 0.85315 0.78095 0.78038 0.78794 1.19416 1.19601 1.19021 1.22086 0.73757 0.91278 0.82919 1.90658 1.47542 1.76766 1.27045 0.94022 0.91767 0.92876 0.92440 0.92122 0.92979 0.91853 0.89477 0.90026 0.92662 0.92671 0.91689 0.83724 0.85345 0.84034 0.96412 0.96367 0.92105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.43 8.95 71.98 0.64 -1.78 16 2 C -0.10 -1.46 2.92 -10.79 -0.03 -1.49 16 3 C -0.14 -1.57 9.19 71.98 0.66 -0.91 16 4 C -0.10 -1.37 4.33 30.60 0.13 -1.23 16 5 C -0.10 -2.20 4.01 30.60 0.12 -2.07 16 6 C -0.10 -2.23 2.42 -11.48 -0.03 -2.25 16 7 H 0.14 2.34 8.14 -2.39 -0.02 2.32 16 8 C -0.11 -1.85 5.03 30.77 0.15 -1.69 16 9 C -0.13 -2.64 6.07 29.89 0.18 -2.46 16 10 C 0.50 19.84 7.47 87.72 0.66 20.50 16 11 O -0.55 -27.34 16.45 -2.87 -0.05 -27.39 16 12 N -0.57 -26.05 2.51 -761.83 -1.91 -27.97 16 13 C 0.24 14.31 4.71 85.64 0.40 14.71 16 14 C -0.55 -33.97 9.37 25.60 0.24 -33.73 16 15 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 16 C 0.01 0.44 5.46 84.65 0.46 0.90 16 17 N -0.93 -59.14 13.29 21.44 0.28 -58.86 16 18 Si 0.97 47.21 29.54 68.60 2.03 49.23 16 19 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 20 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 21 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 22 C 0.51 20.27 7.16 87.72 0.63 20.90 16 23 O -0.54 -26.84 15.38 -2.87 -0.04 -26.88 16 24 H 0.04 0.81 6.69 -2.39 -0.02 0.80 16 25 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 28 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.09 0.82 6.97 -2.39 -0.02 0.80 16 32 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.05 1.48 7.63 -2.39 -0.02 1.46 16 34 H 0.05 1.37 6.83 -2.39 -0.02 1.35 16 35 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.14 1.01 6.97 -2.39 -0.02 0.99 16 37 H 0.13 2.23 8.14 -2.38 -0.02 2.21 16 38 H 0.14 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.02 1.15 7.29 -2.39 -0.02 1.13 16 40 H 0.02 1.18 7.29 -2.39 -0.02 1.16 16 41 H 0.27 15.97 8.31 -92.71 -0.77 15.20 16 Total: -1.00 -84.49 330.93 5.53 -78.96 By element: Atomic # 1 Polarization: 2.52 SS G_CDS: 1.00 Total: 3.51 kcal Atomic # 6 Polarization: 5.16 SS G_CDS: 4.23 Total: 9.39 kcal Atomic # 7 Polarization: -85.20 SS G_CDS: -1.63 Total: -86.82 kcal Atomic # 8 Polarization: -54.18 SS G_CDS: -0.09 Total: -54.27 kcal Atomic # 14 Polarization: 47.21 SS G_CDS: 2.03 Total: 49.23 kcal Total: -84.49 5.53 -78.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160113357.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.862 kcal (2) G-P(sol) polarization free energy of solvation -84.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds