Wall clock time and date at job start Mon Mar 30 2020 06:36:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50703 * 109.47042 * 2 1 4 4 C 1.34509 * 125.78445 * 89.71902 * 3 2 1 5 5 C 1.41389 * 106.83815 * 179.89014 * 4 3 2 6 6 C 1.34512 * 106.84108 * 0.37397 * 5 4 3 7 7 C 1.50695 * 125.78997 * 179.79089 * 6 5 4 8 8 H 1.08992 * 109.47175 * 340.00502 * 7 6 5 9 9 C 1.53001 * 109.46743 * 100.00062 * 7 6 5 10 10 O 1.42899 * 109.47323 * 55.69882 * 9 7 6 11 11 C 1.42908 * 114.00249 * 180.02562 * 10 9 7 12 12 N 1.46900 * 109.47231 * 219.99722 * 7 6 5 13 13 C 1.46902 * 110.99515 * 85.25347 * 12 7 6 14 14 H 1.08997 * 109.47479 * 326.80679 * 13 12 7 15 15 C 1.53001 * 109.46974 * 86.80761 * 13 12 7 16 16 C 1.50698 * 109.47059 * 206.80451 * 13 12 7 17 17 H 1.08000 * 120.00105 * 0.02562 * 16 13 12 18 18 C 1.37879 * 120.00103 * 180.02562 * 16 13 12 19 19 N 1.31510 * 119.99927 * 0.02562 * 18 16 13 20 20 Si 1.86800 * 120.00155 * 180.02562 * 18 16 13 21 21 H 1.48504 * 109.47089 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47381 * 119.99875 * 20 18 16 23 23 H 1.48503 * 109.47065 * 240.00226 * 20 18 16 24 24 O 1.34302 * 125.79229 * 270.03297 * 3 2 1 25 25 H 1.09003 * 109.46667 * 299.99309 * 1 2 3 26 26 H 1.08994 * 109.47843 * 59.99487 * 1 2 3 27 27 H 1.09005 * 109.47081 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47384 * 120.00783 * 2 1 3 29 29 H 1.09003 * 109.46667 * 240.00691 * 2 1 3 30 30 H 1.07998 * 126.58286 * 0.02909 * 4 3 2 31 31 H 1.08006 * 126.57897 * 180.12228 * 5 4 3 32 32 H 1.09003 * 109.46772 * 175.69405 * 9 7 6 33 33 H 1.09000 * 109.47369 * 295.69318 * 9 7 6 34 34 H 1.09003 * 109.46587 * 299.99327 * 11 10 9 35 35 H 1.09001 * 109.46841 * 59.99234 * 11 10 9 36 36 H 1.08997 * 109.47330 * 179.97438 * 11 10 9 37 37 H 1.00898 * 111.00000 * 209.20694 * 12 7 6 38 38 H 1.09000 * 109.47248 * 306.28303 * 15 13 12 39 39 H 1.09000 * 109.47366 * 66.28358 * 15 13 12 40 40 H 1.09002 * 109.47089 * 186.27971 * 15 13 12 41 41 H 0.97003 * 119.99921 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2895 2.1642 1.0912 5 6 2.7398 3.4234 0.6321 6 6 2.7230 3.3769 -0.7121 7 6 3.1191 4.4982 -1.6377 8 1 3.0813 5.4448 -1.0987 9 6 4.5412 4.2590 -2.1490 10 8 4.6149 2.9732 -2.7681 11 6 5.9082 2.6488 -3.2822 12 7 2.1911 4.5450 -2.7755 13 6 0.9945 5.3312 -2.4467 14 1 0.7575 5.2075 -1.3901 15 6 1.2588 6.8092 -2.7406 16 6 -0.1656 4.8528 -3.2811 17 1 -0.0280 4.0452 -3.9849 18 6 -1.4029 5.4461 -3.1460 19 7 -1.5705 6.4298 -2.2894 20 14 -2.8412 4.8527 -4.1798 21 1 -2.3938 3.7433 -5.0599 22 1 -3.9263 4.3707 -3.2879 23 1 -3.3466 5.9725 -5.0139 24 8 2.2936 2.1616 -1.0894 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5139 -0.8898 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 0.8898 29 1 1.8933 -0.5137 -0.8901 30 1 2.1761 1.8573 2.1204 31 1 3.0361 4.2630 1.2435 32 1 4.7997 5.0281 -2.8769 33 1 5.2396 4.3004 -1.3131 34 1 6.1955 3.3844 -4.0335 35 1 6.6346 2.6567 -2.4695 36 1 5.8810 1.6578 -3.7353 37 1 2.6471 4.9077 -3.5993 38 1 2.1644 7.1263 -2.2234 39 1 1.3856 6.9493 -3.8141 40 1 0.4147 7.4052 -2.3937 41 1 -2.4410 6.8469 -2.1941 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173208368.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:33 Heat of formation + Delta-G solvation = -35.016318 kcal Electronic energy + Delta-G solvation = -21264.674421 eV Core-core repulsion = 18146.452320 eV Total energy + Delta-G solvation = -3118.222101 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.90598 -37.96993 -35.96435 -33.82193 -32.94557 -32.03344 -30.34571 -27.61018 -27.04319 -25.62290 -25.02214 -23.60142 -21.58369 -20.90323 -20.27690 -19.24024 -16.53868 -16.39558 -15.98935 -15.70571 -15.18289 -14.83418 -14.57192 -14.17294 -14.06924 -13.44643 -13.24923 -12.78309 -12.67009 -12.26568 -12.11505 -12.03076 -11.93057 -11.51773 -11.31371 -11.22369 -11.02306 -10.87016 -10.78045 -10.68297 -10.47000 -10.10139 -9.84568 -9.45397 -9.22122 -8.95783 -8.32369 -7.66171 -7.28319 -5.93730 -3.94963 2.39735 3.17263 3.35272 3.42723 3.49163 3.56871 3.98801 4.48507 4.97580 5.02717 5.19482 5.22394 5.37356 5.38860 5.46456 5.49708 5.50622 5.58432 5.63822 5.74916 5.75839 5.87340 5.91645 5.97423 6.10733 6.37527 6.45361 6.50900 6.64425 6.74160 6.82764 7.06588 7.09747 7.30395 7.41654 7.72510 7.88530 7.98788 8.28838 8.54468 8.62832 9.12338 9.69540 11.14246 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.013533 B = 0.007214 C = 0.005615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.464718 B = 3880.276592 C = 4985.195742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.037 4.037 3 C -0.026 4.026 4 C -0.214 4.214 5 C -0.237 4.237 6 C 0.048 3.952 7 C 0.161 3.839 8 H 0.080 0.920 9 C 0.064 3.936 10 O -0.363 6.363 11 C 0.031 3.969 12 N -0.665 5.665 13 C 0.210 3.790 14 H 0.034 0.966 15 C -0.167 4.167 16 C -0.488 4.488 17 H 0.064 0.936 18 C 0.054 3.946 19 N -0.899 5.899 20 Si 0.895 3.105 21 H -0.272 1.272 22 H -0.286 1.286 23 H -0.286 1.286 24 O -0.132 6.132 25 H 0.057 0.943 26 H 0.065 0.935 27 H 0.058 0.942 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.136 0.864 31 H 0.137 0.863 32 H 0.054 0.946 33 H 0.050 0.950 34 H 0.037 0.963 35 H 0.034 0.966 36 H 0.082 0.918 37 H 0.333 0.667 38 H 0.003 0.997 39 H 0.032 0.968 40 H 0.086 0.914 41 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.865 -7.301 3.994 14.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.074 4.074 3 C -0.077 4.077 4 C -0.234 4.234 5 C -0.257 4.257 6 C -0.005 4.005 7 C 0.050 3.950 8 H 0.098 0.902 9 C -0.014 4.014 10 O -0.281 6.281 11 C -0.066 4.066 12 N -0.297 5.297 13 C 0.102 3.898 14 H 0.052 0.948 15 C -0.227 4.227 16 C -0.527 4.527 17 H 0.082 0.918 18 C -0.146 4.146 19 N -0.539 5.539 20 Si 0.724 3.276 21 H -0.197 1.197 22 H -0.212 1.212 23 H -0.213 1.213 24 O -0.025 6.025 25 H 0.076 0.924 26 H 0.084 0.916 27 H 0.077 0.923 28 H 0.102 0.898 29 H 0.095 0.905 30 H 0.154 0.846 31 H 0.155 0.845 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.056 0.944 35 H 0.052 0.948 36 H 0.101 0.899 37 H 0.151 0.849 38 H 0.022 0.978 39 H 0.051 0.949 40 H 0.105 0.895 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 11.223 -8.016 3.873 14.325 hybrid contribution -0.234 1.084 -0.187 1.124 sum 10.989 -6.932 3.686 13.506 Atomic orbital electron populations 1.21794 0.94174 1.01597 1.03255 1.19952 0.96262 0.88117 1.03105 1.22322 1.05140 0.95322 0.84926 1.21309 1.08656 0.94746 0.98669 1.21391 1.10965 0.99434 0.93920 1.22177 0.99981 0.85403 0.92907 1.20101 0.90432 0.91854 0.92590 0.90246 1.22772 0.96318 0.86032 0.96245 1.88133 1.29484 1.34000 1.76481 1.22706 0.85580 1.00979 0.97372 1.60684 1.06894 1.59308 1.02800 1.19279 0.86446 0.86908 0.97132 0.94767 1.22449 0.99286 1.02080 0.98839 1.21154 0.92878 1.17126 1.21504 0.91817 1.24932 0.98701 0.95188 0.95738 1.69904 1.23372 1.24538 1.36113 0.86477 0.82395 0.78597 0.80175 1.19697 1.21195 1.21263 1.84112 1.63244 1.21764 1.33421 0.92394 0.91607 0.92267 0.89797 0.90491 0.84574 0.84464 0.92768 0.93167 0.94436 0.94768 0.89917 0.84890 0.97807 0.94894 0.89494 0.93237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.89 37.16 0.37 -1.69 16 2 C -0.04 -0.51 6.47 -27.88 -0.18 -0.69 16 3 C -0.03 -0.46 6.57 -35.63 -0.23 -0.70 16 4 C -0.21 -3.68 10.81 -39.70 -0.43 -4.11 16 5 C -0.24 -4.33 10.80 -39.70 -0.43 -4.76 16 6 C 0.05 0.97 5.41 -35.63 -0.19 0.77 16 7 C 0.16 3.01 2.67 -68.87 -0.18 2.83 16 8 H 0.08 1.43 7.22 -51.93 -0.38 1.06 16 9 C 0.06 0.96 5.46 37.16 0.20 1.17 16 10 O -0.36 -6.03 10.04 -35.23 -0.35 -6.38 16 11 C 0.03 0.36 11.01 101.05 1.11 1.48 16 12 N -0.67 -14.57 5.97 -102.18 -0.61 -15.18 16 13 C 0.21 5.34 2.37 -68.86 -0.16 5.18 16 14 H 0.03 0.98 7.63 -51.93 -0.40 0.58 16 15 C -0.17 -3.97 8.84 37.16 0.33 -3.64 16 16 C -0.49 -13.86 8.84 -34.44 -0.30 -14.17 16 17 H 0.06 1.86 7.81 -52.49 -0.41 1.45 16 18 C 0.05 1.55 5.30 -17.82 -0.09 1.45 16 19 N -0.90 -26.19 11.39 55.43 0.63 -25.55 16 20 Si 0.90 22.10 29.54 -169.99 -5.02 17.08 16 21 H -0.27 -6.69 7.11 56.52 0.40 -6.28 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 O -0.13 -2.80 10.53 5.71 0.06 -2.74 16 25 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 26 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.14 1.95 8.06 -52.49 -0.42 1.52 16 31 H 0.14 2.18 8.06 -52.48 -0.42 1.76 16 32 H 0.05 0.72 8.04 -51.93 -0.42 0.31 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.33 6.81 8.01 -39.29 -0.31 6.49 16 38 H 0.00 0.06 7.51 -51.93 -0.39 -0.33 16 39 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.09 2.30 6.26 -51.93 -0.33 1.97 16 41 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 341.57 15.07 5.15 5.15 Total: -1.00 -31.92 341.57 -7.18 -39.10 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -6.84 Total: 5.42 kcal Atomic # 6 Polarization: -16.68 SS G_CDS: -0.20 Total: -16.88 kcal Atomic # 7 Polarization: -40.76 SS G_CDS: 0.02 Total: -40.74 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: -0.29 Total: -9.12 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.92 -7.18 -39.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173208368.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.083 kcal (2) G-P(sol) polarization free energy of solvation -31.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds