Wall clock time and date at job start Mon Mar 30 2020 06:36:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50703 * 109.47042 * 2 1 4 4 C 1.34509 * 125.78445 * 89.71902 * 3 2 1 5 5 C 1.41389 * 106.83815 * 179.89014 * 4 3 2 6 6 C 1.34512 * 106.84108 * 0.37397 * 5 4 3 7 7 C 1.50695 * 125.78997 * 179.79089 * 6 5 4 8 8 H 1.08992 * 109.47175 * 340.00502 * 7 6 5 9 9 C 1.53001 * 109.46743 * 100.00062 * 7 6 5 10 10 O 1.42899 * 109.47323 * 55.69882 * 9 7 6 11 11 C 1.42908 * 114.00249 * 180.02562 * 10 9 7 12 12 N 1.46900 * 109.47231 * 219.99722 * 7 6 5 13 13 C 1.46902 * 110.99515 * 85.25347 * 12 7 6 14 14 H 1.08997 * 109.47479 * 326.80679 * 13 12 7 15 15 C 1.53001 * 109.46974 * 86.80761 * 13 12 7 16 16 C 1.50698 * 109.47059 * 206.80451 * 13 12 7 17 17 H 1.08000 * 120.00105 * 0.02562 * 16 13 12 18 18 C 1.37879 * 120.00103 * 180.02562 * 16 13 12 19 19 N 1.31510 * 119.99927 * 0.02562 * 18 16 13 20 20 Si 1.86800 * 120.00155 * 180.02562 * 18 16 13 21 21 H 1.48504 * 109.47089 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47381 * 119.99875 * 20 18 16 23 23 H 1.48503 * 109.47065 * 240.00226 * 20 18 16 24 24 O 1.34302 * 125.79229 * 270.03297 * 3 2 1 25 25 H 1.09003 * 109.46667 * 299.99309 * 1 2 3 26 26 H 1.08994 * 109.47843 * 59.99487 * 1 2 3 27 27 H 1.09005 * 109.47081 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47384 * 120.00783 * 2 1 3 29 29 H 1.09003 * 109.46667 * 240.00691 * 2 1 3 30 30 H 1.07998 * 126.58286 * 0.02909 * 4 3 2 31 31 H 1.08006 * 126.57897 * 180.12228 * 5 4 3 32 32 H 1.09003 * 109.46772 * 175.69405 * 9 7 6 33 33 H 1.09000 * 109.47369 * 295.69318 * 9 7 6 34 34 H 1.09003 * 109.46587 * 299.99327 * 11 10 9 35 35 H 1.09001 * 109.46841 * 59.99234 * 11 10 9 36 36 H 1.08997 * 109.47330 * 179.97438 * 11 10 9 37 37 H 1.00898 * 111.00000 * 209.20694 * 12 7 6 38 38 H 1.09000 * 109.47248 * 306.28303 * 15 13 12 39 39 H 1.09000 * 109.47366 * 66.28358 * 15 13 12 40 40 H 1.09002 * 109.47089 * 186.27971 * 15 13 12 41 41 H 0.97003 * 119.99921 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2895 2.1642 1.0912 5 6 2.7398 3.4234 0.6321 6 6 2.7230 3.3769 -0.7121 7 6 3.1191 4.4982 -1.6377 8 1 3.0813 5.4448 -1.0987 9 6 4.5412 4.2590 -2.1490 10 8 4.6149 2.9732 -2.7681 11 6 5.9082 2.6488 -3.2822 12 7 2.1911 4.5450 -2.7755 13 6 0.9945 5.3312 -2.4467 14 1 0.7575 5.2075 -1.3901 15 6 1.2588 6.8092 -2.7406 16 6 -0.1656 4.8528 -3.2811 17 1 -0.0280 4.0452 -3.9849 18 6 -1.4029 5.4461 -3.1460 19 7 -1.5705 6.4298 -2.2894 20 14 -2.8412 4.8527 -4.1798 21 1 -2.3938 3.7433 -5.0599 22 1 -3.9263 4.3707 -3.2879 23 1 -3.3466 5.9725 -5.0139 24 8 2.2936 2.1616 -1.0894 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5139 -0.8898 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 0.8898 29 1 1.8933 -0.5137 -0.8901 30 1 2.1761 1.8573 2.1204 31 1 3.0361 4.2630 1.2435 32 1 4.7997 5.0281 -2.8769 33 1 5.2396 4.3004 -1.3131 34 1 6.1955 3.3844 -4.0335 35 1 6.6346 2.6567 -2.4695 36 1 5.8810 1.6578 -3.7353 37 1 2.6471 4.9077 -3.5993 38 1 2.1644 7.1263 -2.2234 39 1 1.3856 6.9493 -3.8141 40 1 0.4147 7.4052 -2.3937 41 1 -2.4410 6.8469 -2.1941 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173208368.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:33 Heat of formation + Delta-G solvation = -56.102284 kcal Electronic energy + Delta-G solvation = -21265.588777 eV Core-core repulsion = 18146.452320 eV Total energy + Delta-G solvation = -3119.136457 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.31669 -39.25411 -37.58448 -35.16882 -34.67327 -33.54441 -32.03632 -29.01874 -28.44682 -27.24180 -26.70813 -24.79558 -22.97679 -22.33459 -22.12819 -20.66099 -18.45918 -17.72977 -17.32509 -17.10684 -16.75473 -16.36990 -16.07511 -15.54620 -15.33158 -15.01538 -14.72193 -14.35633 -13.90668 -13.80555 -13.59807 -13.47910 -13.19199 -13.13448 -12.85578 -12.81373 -12.48977 -12.40321 -12.35099 -12.17833 -12.05812 -11.84966 -11.76178 -11.03633 -10.62475 -10.54628 -10.50054 -9.07030 -8.99715 -8.10596 -6.19681 0.99408 1.38391 1.40059 1.52893 1.80260 2.25064 2.43117 2.88413 3.18190 3.49334 3.74735 4.03649 4.05295 4.25467 4.27794 4.40876 4.44183 4.44936 4.52692 4.58817 4.63454 4.66947 4.74680 4.86472 4.88339 4.92363 4.95445 5.03789 5.07011 5.20457 5.30983 5.38846 5.44244 5.70033 5.77879 5.82539 6.24525 6.33299 6.49512 6.68575 6.81132 6.94225 7.49387 8.95639 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.013533 B = 0.007214 C = 0.005615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.464718 B = 3880.276592 C = 4985.195742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.036 4.036 3 C -0.041 4.041 4 C -0.220 4.220 5 C -0.243 4.243 6 C 0.017 3.983 7 C 0.158 3.842 8 H 0.083 0.917 9 C 0.070 3.930 10 O -0.399 6.399 11 C 0.026 3.974 12 N -0.674 5.674 13 C 0.221 3.779 14 H -0.004 1.004 15 C -0.153 4.153 16 C -0.509 4.509 17 H 0.047 0.953 18 C 0.010 3.990 19 N -0.922 5.922 20 Si 0.955 3.045 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.276 1.276 24 O -0.166 6.166 25 H 0.055 0.945 26 H 0.029 0.971 27 H 0.091 0.909 28 H 0.119 0.881 29 H 0.080 0.920 30 H 0.166 0.834 31 H 0.156 0.844 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.052 0.948 35 H 0.050 0.950 36 H 0.088 0.912 37 H 0.339 0.661 38 H 0.033 0.967 39 H 0.034 0.966 40 H 0.058 0.942 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.750 -8.073 4.346 15.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.073 4.073 3 C -0.092 4.092 4 C -0.239 4.239 5 C -0.263 4.263 6 C -0.035 4.035 7 C 0.047 3.953 8 H 0.101 0.899 9 C -0.007 4.007 10 O -0.318 6.318 11 C -0.070 4.070 12 N -0.306 5.306 13 C 0.112 3.888 14 H 0.014 0.986 15 C -0.212 4.212 16 C -0.548 4.548 17 H 0.066 0.934 18 C -0.188 4.188 19 N -0.562 5.562 20 Si 0.781 3.219 21 H -0.197 1.197 22 H -0.208 1.208 23 H -0.201 1.201 24 O -0.061 6.061 25 H 0.074 0.926 26 H 0.049 0.951 27 H 0.109 0.891 28 H 0.137 0.863 29 H 0.098 0.902 30 H 0.183 0.817 31 H 0.174 0.826 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.107 0.893 37 H 0.158 0.842 38 H 0.052 0.948 39 H 0.053 0.947 40 H 0.077 0.923 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 12.132 -8.785 4.224 15.563 hybrid contribution -0.466 1.270 -0.248 1.375 sum 11.665 -7.516 3.976 14.435 Atomic orbital electron populations 1.21773 0.94256 1.03101 1.01355 1.20168 0.96047 0.86074 1.04985 1.23207 1.04692 0.96836 0.84477 1.21703 1.08053 0.94181 0.99948 1.21774 1.10301 1.00543 0.93670 1.22521 1.01425 0.85641 0.93920 1.20242 0.91809 0.91850 0.91378 0.89932 1.22727 0.94186 0.86268 0.97474 1.88080 1.32110 1.34589 1.76988 1.22893 0.84119 1.01731 0.98256 1.60462 1.07025 1.58654 1.04412 1.18941 0.87392 0.88257 0.94178 0.98574 1.22224 0.99479 1.00393 0.99144 1.21415 0.94618 1.16976 1.21813 0.93433 1.25658 1.01045 0.95303 0.96792 1.70019 1.23982 1.25187 1.37019 0.85547 0.79264 0.78314 0.78757 1.19656 1.20839 1.20121 1.84074 1.64105 1.22628 1.35295 0.92587 0.95124 0.89060 0.86266 0.90164 0.81660 0.82616 0.90866 0.90947 0.92964 0.93180 0.89350 0.84151 0.94760 0.94659 0.92300 0.93066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.89 9.89 71.98 0.71 -3.18 16 2 C -0.04 -0.93 6.47 29.85 0.19 -0.74 16 3 C -0.04 -1.47 6.57 24.83 0.16 -1.31 16 4 C -0.22 -7.31 10.81 22.19 0.24 -7.07 16 5 C -0.24 -8.77 10.80 22.19 0.24 -8.53 16 6 C 0.02 0.69 5.41 24.83 0.13 0.82 16 7 C 0.16 5.87 2.67 44.17 0.12 5.99 16 8 H 0.08 2.96 7.22 -2.39 -0.02 2.94 16 9 C 0.07 2.03 5.46 71.98 0.39 2.42 16 10 O -0.40 -12.88 10.04 -148.98 -1.50 -14.38 16 11 C 0.03 0.58 11.01 113.37 1.25 1.82 16 12 N -0.67 -29.91 5.97 -477.18 -2.85 -32.76 16 13 C 0.22 11.51 2.37 44.17 0.10 11.61 16 14 H 0.00 -0.22 7.63 -2.39 -0.02 -0.24 16 15 C -0.15 -7.30 8.84 71.98 0.64 -6.66 16 16 C -0.51 -29.67 8.84 25.60 0.23 -29.45 16 17 H 0.05 2.85 7.81 -2.91 -0.02 2.83 16 18 C 0.01 0.57 5.30 84.66 0.45 1.02 16 19 N -0.92 -54.50 11.39 21.45 0.24 -54.25 16 20 Si 0.96 45.80 29.54 68.60 2.03 47.83 16 21 H -0.27 -12.91 7.11 99.48 0.71 -12.20 16 22 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 23 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 24 O -0.17 -7.20 10.53 -2.47 -0.03 -7.22 16 25 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.09 1.79 8.14 -2.38 -0.02 1.77 16 28 H 0.12 2.24 8.14 -2.39 -0.02 2.22 16 29 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.17 4.33 8.06 -2.91 -0.02 4.31 16 31 H 0.16 4.80 8.06 -2.91 -0.02 4.78 16 32 H 0.07 1.80 8.04 -2.39 -0.02 1.78 16 33 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.34 13.90 8.01 -89.70 -0.72 13.18 16 38 H 0.03 1.38 7.51 -2.39 -0.02 1.36 16 39 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.06 3.15 6.26 -2.39 -0.01 3.13 16 41 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 Total: -1.00 -70.57 341.57 3.04 -67.53 By element: Atomic # 1 Polarization: 26.22 SS G_CDS: 0.28 Total: 26.50 kcal Atomic # 6 Polarization: -38.10 SS G_CDS: 4.86 Total: -33.24 kcal Atomic # 7 Polarization: -84.41 SS G_CDS: -2.60 Total: -87.01 kcal Atomic # 8 Polarization: -20.08 SS G_CDS: -1.52 Total: -21.60 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -70.57 3.04 -67.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173208368.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.424 kcal (2) G-P(sol) polarization free energy of solvation -70.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds