Wall clock time and date at job start Mon Mar 30 2020 06:36:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50702 * 109.47170 * 2 1 4 4 C 1.34508 * 125.79140 * 90.00130 * 3 2 1 5 5 C 1.41386 * 106.84578 * 180.02562 * 4 3 2 6 6 C 1.34520 * 106.83519 * 359.97438 * 5 4 3 7 7 C 1.50701 * 125.78761 * 179.97438 * 6 5 4 8 8 H 1.09003 * 109.47057 * 340.00065 * 7 6 5 9 9 C 1.52996 * 109.46921 * 100.00053 * 7 6 5 10 10 O 1.42907 * 109.47138 * 55.00303 * 9 7 6 11 11 C 1.42899 * 113.99821 * 179.97438 * 10 9 7 12 12 N 1.46894 * 109.47286 * 220.00299 * 7 6 5 13 13 C 1.46899 * 111.00220 * 155.00073 * 12 7 6 14 14 H 1.09002 * 109.47043 * 35.00059 * 13 12 7 15 15 C 1.52997 * 109.47254 * 274.99988 * 13 12 7 16 16 C 1.50699 * 109.47244 * 154.99886 * 13 12 7 17 17 H 1.08000 * 119.99792 * 0.02562 * 16 13 12 18 18 C 1.37878 * 119.99902 * 179.97438 * 16 13 12 19 19 N 1.31515 * 120.00126 * 0.02562 * 18 16 13 20 20 Si 1.86803 * 119.99745 * 180.02562 * 18 16 13 21 21 H 1.48500 * 109.47256 * 90.00491 * 20 18 16 22 22 H 1.48506 * 109.46930 * 210.00332 * 20 18 16 23 23 H 1.48499 * 109.47104 * 330.00193 * 20 18 16 24 24 O 1.34304 * 108.42185 * 0.26706 * 6 5 4 25 25 H 1.09000 * 109.47472 * 300.00498 * 1 2 3 26 26 H 1.09003 * 109.47096 * 59.99780 * 1 2 3 27 27 H 1.09003 * 109.47516 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47222 * 240.00240 * 2 1 3 29 29 H 1.09000 * 109.47424 * 119.99540 * 2 1 3 30 30 H 1.08000 * 126.57982 * 0.02562 * 4 3 2 31 31 H 1.08000 * 126.58340 * 180.02562 * 5 4 3 32 32 H 1.09002 * 109.46907 * 174.99974 * 9 7 6 33 33 H 1.09000 * 109.47463 * 295.00344 * 9 7 6 34 34 H 1.09004 * 109.46985 * 60.00012 * 11 10 9 35 35 H 1.09003 * 109.46416 * 179.97438 * 11 10 9 36 36 H 1.08996 * 109.47379 * 299.99897 * 11 10 9 37 37 H 1.00900 * 111.00005 * 31.04607 * 12 7 6 38 38 H 1.08998 * 109.47533 * 59.99633 * 15 13 12 39 39 H 1.08996 * 109.47853 * 179.97438 * 15 13 12 40 40 H 1.09002 * 109.47153 * 300.00004 * 15 13 12 41 41 H 0.96999 * 120.00073 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2945 2.1625 1.0911 5 6 2.7397 3.4235 0.6320 6 6 2.7234 3.3767 -0.7123 7 6 3.1188 4.4982 -1.6379 8 1 3.0798 5.4449 -1.0991 9 6 4.5413 4.2603 -2.1487 10 8 4.6204 2.9678 -2.7532 11 6 5.9143 2.6446 -3.2665 12 7 2.1912 4.5440 -2.7760 13 6 2.1395 5.8912 -3.3593 14 1 3.1256 6.3516 -3.2982 15 6 1.1303 6.7430 -2.5868 16 6 1.7172 5.7978 -4.8028 17 1 1.5077 4.8340 -5.2429 18 6 1.5973 6.9428 -5.5615 19 7 1.8519 8.1165 -5.0255 20 14 1.0731 6.8270 -7.3508 21 1 -0.4068 6.9113 -7.4395 22 1 1.6795 7.9449 -8.1175 23 1 1.5301 5.5328 -7.9176 24 8 2.2888 2.1632 -1.0895 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5137 0.8900 30 1 2.1859 1.8540 2.1203 31 1 3.0367 4.2628 1.2433 32 1 4.7948 5.0223 -2.8858 33 1 5.2407 4.3147 -1.3145 34 1 6.6425 2.6656 -2.4557 35 1 5.8913 1.6482 -3.7081 36 1 6.1959 3.3730 -4.0268 37 1 1.2707 4.2317 -2.5050 38 1 1.4356 6.8106 -1.5426 39 1 1.0922 7.7428 -3.0192 40 1 0.1441 6.2826 -2.6478 41 1 1.7679 8.9220 -5.5593 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173208396.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:39 Heat of formation + Delta-G solvation = -35.921287 kcal Electronic energy + Delta-G solvation = -21027.019084 eV Core-core repulsion = 17908.757740 eV Total energy + Delta-G solvation = -3118.261344 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.23965 -37.74465 -35.90134 -34.09252 -33.04625 -32.25768 -30.32610 -27.62917 -27.08108 -25.50079 -25.09162 -23.72639 -21.84242 -21.14432 -19.96757 -19.48604 -17.02867 -16.06995 -15.97661 -15.75296 -15.18555 -14.76570 -14.60861 -14.38541 -14.23405 -13.44618 -13.06308 -13.00268 -12.61592 -12.41298 -12.35318 -12.18943 -11.84747 -11.52851 -11.50968 -11.42025 -11.02677 -10.90073 -10.78195 -10.69205 -10.48021 -10.13635 -9.86087 -9.53858 -9.14716 -8.98988 -8.34655 -7.96458 -7.25512 -5.97202 -3.99392 2.07555 2.88849 3.24445 3.34693 3.40808 3.46624 4.24353 4.46264 4.75960 4.97001 5.04655 5.22006 5.28236 5.33054 5.34896 5.47913 5.50772 5.66941 5.72806 5.74370 5.82945 5.87955 5.96475 5.98665 6.04083 6.12126 6.16443 6.27494 6.47039 6.65510 6.81163 6.82817 7.06299 7.27631 7.57734 7.67601 7.74084 7.91802 8.26047 8.51158 8.60160 9.08404 9.65678 11.10073 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.019074 B = 0.005191 C = 0.004875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.600175 B = 5392.335831 C = 5742.273401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.040 4.040 3 C -0.023 4.023 4 C -0.213 4.213 5 C -0.227 4.227 6 C 0.022 3.978 7 C 0.165 3.835 8 H 0.079 0.921 9 C 0.077 3.923 10 O -0.363 6.363 11 C 0.033 3.967 12 N -0.665 5.665 13 C 0.209 3.791 14 H 0.035 0.965 15 C -0.171 4.171 16 C -0.490 4.490 17 H 0.064 0.936 18 C 0.055 3.945 19 N -0.899 5.899 20 Si 0.897 3.103 21 H -0.282 1.282 22 H -0.288 1.288 23 H -0.274 1.274 24 O -0.142 6.142 25 H 0.057 0.943 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.140 0.860 31 H 0.142 0.858 32 H 0.063 0.937 33 H 0.040 0.960 34 H 0.029 0.971 35 H 0.078 0.922 36 H 0.039 0.961 37 H 0.332 0.668 38 H 0.004 0.996 39 H 0.091 0.909 40 H 0.029 0.971 41 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.051 -11.559 11.048 16.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.077 4.077 3 C -0.074 4.074 4 C -0.233 4.233 5 C -0.247 4.247 6 C -0.030 4.030 7 C 0.055 3.945 8 H 0.097 0.903 9 C -0.001 4.001 10 O -0.281 6.281 11 C -0.064 4.064 12 N -0.296 5.296 13 C 0.102 3.898 14 H 0.052 0.948 15 C -0.231 4.231 16 C -0.528 4.528 17 H 0.082 0.918 18 C -0.145 4.145 19 N -0.540 5.540 20 Si 0.726 3.274 21 H -0.209 1.209 22 H -0.214 1.214 23 H -0.199 1.199 24 O -0.036 6.036 25 H 0.076 0.924 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.098 0.902 29 H 0.105 0.895 30 H 0.157 0.843 31 H 0.159 0.841 32 H 0.082 0.918 33 H 0.058 0.942 34 H 0.048 0.952 35 H 0.097 0.903 36 H 0.058 0.942 37 H 0.150 0.850 38 H 0.023 0.977 39 H 0.109 0.891 40 H 0.048 0.952 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.327 -11.821 10.209 15.969 hybrid contribution -0.442 0.912 0.026 1.014 sum 2.886 -10.909 10.235 15.234 Atomic orbital electron populations 1.21788 0.94214 1.01917 1.02797 1.19997 0.96173 0.87963 1.03596 1.22381 1.05050 0.95226 0.84713 1.21390 1.08370 0.94636 0.98867 1.21487 1.09868 0.99514 0.93845 1.22480 1.01245 0.85653 0.93623 1.20212 0.93780 0.90763 0.89763 0.90343 1.22595 0.95184 0.86225 0.96060 1.88040 1.29425 1.33471 1.77184 1.22653 0.85629 1.00856 0.97304 1.60857 1.12173 1.29563 1.26983 1.19282 0.95099 0.81820 0.93594 0.94755 1.22471 0.99172 1.05499 0.95923 1.21127 1.44221 0.93049 0.94445 0.91798 1.24935 0.95762 0.95333 0.98507 1.69877 1.50298 0.97595 1.36180 0.86505 0.78543 0.77578 0.84819 1.20862 1.21434 1.19854 1.84103 1.63775 1.21924 1.33838 0.92395 0.91978 0.91991 0.90184 0.89481 0.84252 0.84057 0.91843 0.94214 0.95220 0.90299 0.94210 0.84982 0.97665 0.89084 0.95194 0.93117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.89 37.15 0.37 -1.12 16 2 C -0.04 -0.44 6.47 -27.89 -0.18 -0.62 16 3 C -0.02 -0.34 6.57 -35.63 -0.23 -0.57 16 4 C -0.21 -3.04 10.81 -39.70 -0.43 -3.47 16 5 C -0.23 -3.55 10.80 -39.70 -0.43 -3.98 16 6 C 0.02 0.39 5.36 -35.62 -0.19 0.20 16 7 C 0.17 3.11 2.68 -68.87 -0.18 2.93 16 8 H 0.08 1.43 7.10 -51.93 -0.37 1.06 16 9 C 0.08 1.38 5.66 37.16 0.21 1.60 16 10 O -0.36 -6.88 10.03 -35.23 -0.35 -7.23 16 11 C 0.03 0.48 11.01 101.05 1.11 1.59 16 12 N -0.66 -14.68 5.97 -102.18 -0.61 -15.29 16 13 C 0.21 5.23 2.37 -68.87 -0.16 5.06 16 14 H 0.03 0.92 7.10 -51.93 -0.37 0.55 16 15 C -0.17 -4.10 8.92 37.16 0.33 -3.77 16 16 C -0.49 -13.63 8.84 -34.44 -0.30 -13.93 16 17 H 0.06 1.83 7.81 -52.49 -0.41 1.42 16 18 C 0.05 1.52 5.30 -17.82 -0.09 1.43 16 19 N -0.90 -25.57 11.32 55.43 0.63 -24.94 16 20 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 24 O -0.14 -2.60 10.53 5.70 0.06 -2.54 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.14 1.60 8.06 -52.49 -0.42 1.18 16 31 H 0.14 1.92 8.06 -52.49 -0.42 1.50 16 32 H 0.06 1.22 7.38 -51.93 -0.38 0.83 16 33 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.33 7.31 8.09 -39.29 -0.32 6.99 16 38 H 0.00 0.09 7.43 -51.93 -0.39 -0.29 16 39 H 0.09 2.40 6.07 -51.93 -0.32 2.09 16 40 H 0.03 0.69 8.13 -51.93 -0.42 0.27 16 41 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 340.22 15.07 5.13 5.13 Total: -1.00 -30.37 340.22 -7.12 -37.48 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -6.76 Total: 5.39 kcal Atomic # 6 Polarization: -14.48 SS G_CDS: -0.19 Total: -14.66 kcal Atomic # 7 Polarization: -40.25 SS G_CDS: 0.02 Total: -40.23 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: -0.29 Total: -9.77 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.37 -7.12 -37.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173208396.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.562 kcal (2) G-P(sol) polarization free energy of solvation -30.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds