Wall clock time and date at job start Mon Mar 30 2020 06:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50702 * 109.47170 * 2 1 4 4 C 1.34508 * 125.79140 * 90.00130 * 3 2 1 5 5 C 1.41386 * 106.84578 * 180.02562 * 4 3 2 6 6 C 1.34520 * 106.83519 * 359.97438 * 5 4 3 7 7 C 1.50701 * 125.78761 * 179.97438 * 6 5 4 8 8 H 1.09003 * 109.47057 * 340.00065 * 7 6 5 9 9 C 1.52996 * 109.46921 * 100.00053 * 7 6 5 10 10 O 1.42907 * 109.47138 * 55.00303 * 9 7 6 11 11 C 1.42899 * 113.99821 * 179.97438 * 10 9 7 12 12 N 1.46894 * 109.47286 * 220.00299 * 7 6 5 13 13 C 1.46899 * 111.00220 * 155.00073 * 12 7 6 14 14 H 1.09002 * 109.47043 * 35.00059 * 13 12 7 15 15 C 1.52997 * 109.47254 * 274.99988 * 13 12 7 16 16 C 1.50699 * 109.47244 * 154.99886 * 13 12 7 17 17 H 1.08000 * 119.99792 * 0.02562 * 16 13 12 18 18 C 1.37878 * 119.99902 * 179.97438 * 16 13 12 19 19 N 1.31515 * 120.00126 * 0.02562 * 18 16 13 20 20 Si 1.86803 * 119.99745 * 180.02562 * 18 16 13 21 21 H 1.48500 * 109.47256 * 90.00491 * 20 18 16 22 22 H 1.48506 * 109.46930 * 210.00332 * 20 18 16 23 23 H 1.48499 * 109.47104 * 330.00193 * 20 18 16 24 24 O 1.34304 * 108.42185 * 0.26706 * 6 5 4 25 25 H 1.09000 * 109.47472 * 300.00498 * 1 2 3 26 26 H 1.09003 * 109.47096 * 59.99780 * 1 2 3 27 27 H 1.09003 * 109.47516 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47222 * 240.00240 * 2 1 3 29 29 H 1.09000 * 109.47424 * 119.99540 * 2 1 3 30 30 H 1.08000 * 126.57982 * 0.02562 * 4 3 2 31 31 H 1.08000 * 126.58340 * 180.02562 * 5 4 3 32 32 H 1.09002 * 109.46907 * 174.99974 * 9 7 6 33 33 H 1.09000 * 109.47463 * 295.00344 * 9 7 6 34 34 H 1.09004 * 109.46985 * 60.00012 * 11 10 9 35 35 H 1.09003 * 109.46416 * 179.97438 * 11 10 9 36 36 H 1.08996 * 109.47379 * 299.99897 * 11 10 9 37 37 H 1.00900 * 111.00005 * 31.04607 * 12 7 6 38 38 H 1.08998 * 109.47533 * 59.99633 * 15 13 12 39 39 H 1.08996 * 109.47853 * 179.97438 * 15 13 12 40 40 H 1.09002 * 109.47153 * 300.00004 * 15 13 12 41 41 H 0.96999 * 120.00073 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2945 2.1625 1.0911 5 6 2.7397 3.4235 0.6320 6 6 2.7234 3.3767 -0.7123 7 6 3.1188 4.4982 -1.6379 8 1 3.0798 5.4449 -1.0991 9 6 4.5413 4.2603 -2.1487 10 8 4.6204 2.9678 -2.7532 11 6 5.9143 2.6446 -3.2665 12 7 2.1912 4.5440 -2.7760 13 6 2.1395 5.8912 -3.3593 14 1 3.1256 6.3516 -3.2982 15 6 1.1303 6.7430 -2.5868 16 6 1.7172 5.7978 -4.8028 17 1 1.5077 4.8340 -5.2429 18 6 1.5973 6.9428 -5.5615 19 7 1.8519 8.1165 -5.0255 20 14 1.0731 6.8270 -7.3508 21 1 -0.4068 6.9113 -7.4395 22 1 1.6795 7.9449 -8.1175 23 1 1.5301 5.5328 -7.9176 24 8 2.2888 2.1632 -1.0895 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5137 0.8900 30 1 2.1859 1.8540 2.1203 31 1 3.0367 4.2628 1.2433 32 1 4.7948 5.0223 -2.8858 33 1 5.2407 4.3147 -1.3145 34 1 6.6425 2.6656 -2.4557 35 1 5.8913 1.6482 -3.7081 36 1 6.1959 3.3730 -4.0268 37 1 1.2707 4.2317 -2.5050 38 1 1.4356 6.8106 -1.5426 39 1 1.0922 7.7428 -3.0192 40 1 0.1441 6.2826 -2.6478 41 1 1.7679 8.9220 -5.5593 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173208396.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:38 Heat of formation + Delta-G solvation = -55.271180 kcal Electronic energy + Delta-G solvation = -21027.858158 eV Core-core repulsion = 17908.757740 eV Total energy + Delta-G solvation = -3119.100418 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.45051 -39.20743 -37.56447 -35.21746 -34.67997 -33.62727 -31.98371 -28.88017 -28.64875 -27.24276 -26.75437 -24.81419 -23.20984 -22.38561 -21.68581 -20.77128 -18.73503 -17.61955 -17.42158 -17.15696 -16.67842 -16.39463 -15.92744 -15.70457 -15.35631 -15.06771 -14.43116 -14.42558 -13.92059 -13.82402 -13.58935 -13.54459 -13.16939 -13.10494 -12.94238 -12.78756 -12.68434 -12.36193 -12.31743 -12.21099 -12.03206 -11.88881 -11.72364 -11.05372 -10.70513 -10.52833 -10.44929 -9.15144 -9.01298 -8.09675 -6.19387 0.87023 1.42287 1.42950 1.54317 1.73998 2.09051 2.44329 2.93513 3.18791 3.45993 3.65284 4.00848 4.15540 4.21532 4.27135 4.41822 4.43017 4.47474 4.53708 4.59368 4.63338 4.70176 4.71763 4.83989 4.86746 4.92046 4.95840 5.03430 5.07957 5.18386 5.25867 5.37632 5.38667 5.68837 5.73165 5.81222 6.23531 6.33893 6.41738 6.62430 6.74922 6.92849 7.49771 8.95889 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.019074 B = 0.005191 C = 0.004875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.600175 B = 5392.335831 C = 5742.273401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.040 4.040 3 C -0.029 4.029 4 C -0.216 4.216 5 C -0.219 4.219 6 C -0.010 4.010 7 C 0.165 3.835 8 H 0.083 0.917 9 C 0.080 3.920 10 O -0.391 6.391 11 C 0.027 3.973 12 N -0.671 5.671 13 C 0.218 3.782 14 H 0.012 0.988 15 C -0.158 4.158 16 C -0.512 4.512 17 H 0.048 0.952 18 C 0.013 3.987 19 N -0.920 5.920 20 Si 0.957 3.043 21 H -0.276 1.276 22 H -0.282 1.282 23 H -0.275 1.275 24 O -0.172 6.172 25 H 0.061 0.939 26 H 0.038 0.962 27 H 0.086 0.914 28 H 0.078 0.922 29 H 0.117 0.883 30 H 0.171 0.829 31 H 0.160 0.840 32 H 0.041 0.959 33 H 0.068 0.932 34 H 0.052 0.948 35 H 0.092 0.908 36 H 0.036 0.964 37 H 0.330 0.670 38 H 0.028 0.972 39 H 0.066 0.934 40 H 0.028 0.972 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.079 -12.871 12.346 18.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.077 4.077 3 C -0.079 4.079 4 C -0.235 4.235 5 C -0.238 4.238 6 C -0.061 4.061 7 C 0.055 3.945 8 H 0.101 0.899 9 C 0.003 3.997 10 O -0.310 6.310 11 C -0.069 4.069 12 N -0.302 5.302 13 C 0.109 3.891 14 H 0.030 0.970 15 C -0.217 4.217 16 C -0.550 4.550 17 H 0.066 0.934 18 C -0.186 4.186 19 N -0.560 5.560 20 Si 0.784 3.216 21 H -0.202 1.202 22 H -0.207 1.207 23 H -0.200 1.200 24 O -0.068 6.068 25 H 0.080 0.920 26 H 0.057 0.943 27 H 0.105 0.895 28 H 0.096 0.904 29 H 0.135 0.865 30 H 0.188 0.812 31 H 0.178 0.822 32 H 0.060 0.940 33 H 0.086 0.914 34 H 0.071 0.929 35 H 0.111 0.889 36 H 0.054 0.946 37 H 0.147 0.853 38 H 0.047 0.953 39 H 0.084 0.916 40 H 0.047 0.953 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.365 -13.138 11.519 17.793 hybrid contribution -0.416 1.241 -0.316 1.347 sum 2.949 -11.896 11.202 16.605 Atomic orbital electron populations 1.21769 0.93516 1.03254 1.01836 1.20223 0.96675 0.85869 1.04977 1.23231 1.04042 0.96478 0.84165 1.21756 1.07756 0.93812 1.00173 1.21823 1.08256 1.00642 0.93109 1.22271 1.03990 0.85705 0.94087 1.20199 0.93367 0.91876 0.89036 0.89947 1.22555 0.95358 0.85492 0.96331 1.87993 1.31840 1.33588 1.77597 1.22848 0.84577 1.01432 0.98048 1.60707 1.12569 1.27698 1.29194 1.19016 0.93842 0.83311 0.92884 0.97015 1.22272 0.98873 1.03621 0.96974 1.21365 1.44875 0.92545 0.96254 0.93370 1.25633 0.95670 0.94998 1.02263 1.69984 1.50583 0.98011 1.37459 0.85566 0.78369 0.77479 0.80235 1.20151 1.20704 1.19955 1.84069 1.64528 1.22486 1.35706 0.92009 0.94255 0.89527 0.90383 0.86460 0.81194 0.82193 0.94034 0.91423 0.92907 0.88906 0.94568 0.85260 0.95318 0.91553 0.95329 0.92951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 9.89 71.98 0.71 -1.91 16 2 C -0.04 -0.79 6.47 29.85 0.19 -0.60 16 3 C -0.03 -0.81 6.57 24.83 0.16 -0.64 16 4 C -0.22 -5.59 10.81 22.19 0.24 -5.35 16 5 C -0.22 -6.42 10.80 22.19 0.24 -6.18 16 6 C -0.01 -0.34 5.36 24.83 0.13 -0.21 16 7 C 0.17 6.27 2.68 44.17 0.12 6.39 16 8 H 0.08 3.00 7.10 -2.39 -0.02 2.98 16 9 C 0.08 2.90 5.66 71.98 0.41 3.31 16 10 O -0.39 -14.86 10.03 -148.98 -1.49 -16.35 16 11 C 0.03 0.78 11.01 113.37 1.25 2.03 16 12 N -0.67 -30.40 5.97 -477.18 -2.85 -33.25 16 13 C 0.22 11.15 2.37 44.17 0.10 11.26 16 14 H 0.01 0.66 7.10 -2.39 -0.02 0.64 16 15 C -0.16 -7.65 8.92 71.98 0.64 -7.01 16 16 C -0.51 -29.18 8.84 25.60 0.23 -28.95 16 17 H 0.05 2.83 7.81 -2.91 -0.02 2.81 16 18 C 0.01 0.70 5.30 84.65 0.45 1.15 16 19 N -0.92 -52.96 11.32 21.45 0.24 -52.72 16 20 Si 0.96 44.85 29.54 68.60 2.03 46.88 16 21 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 22 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 23 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 24 O -0.17 -6.26 10.53 -2.53 -0.03 -6.28 16 25 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.17 3.24 8.06 -2.91 -0.02 3.21 16 31 H 0.16 3.94 8.06 -2.91 -0.02 3.92 16 32 H 0.04 1.65 7.38 -2.39 -0.02 1.63 16 33 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 36 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.33 14.92 8.09 -89.69 -0.73 14.20 16 38 H 0.03 1.20 7.43 -2.39 -0.02 1.19 16 39 H 0.07 3.56 6.07 -2.39 -0.01 3.54 16 40 H 0.03 1.34 8.13 -2.39 -0.02 1.32 16 41 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 Total: -1.00 -65.91 340.22 3.05 -62.85 By element: Atomic # 1 Polarization: 25.30 SS G_CDS: 0.28 Total: 25.58 kcal Atomic # 6 Polarization: -31.59 SS G_CDS: 4.88 Total: -26.72 kcal Atomic # 7 Polarization: -83.36 SS G_CDS: -2.61 Total: -85.96 kcal Atomic # 8 Polarization: -21.11 SS G_CDS: -1.52 Total: -22.63 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -65.91 3.05 -62.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173208396.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.583 kcal (2) G-P(sol) polarization free energy of solvation -65.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds