Wall clock time and date at job start Mon Mar 30 2020 06:36:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.47133 * 2 1 4 4 C 1.34517 * 125.78705 * 89.99926 * 3 2 1 5 5 C 1.41383 * 106.83485 * 179.75087 * 4 3 2 6 6 C 1.34506 * 106.84732 * 0.37365 * 5 4 3 7 7 C 1.50700 * 125.79544 * 179.88637 * 6 5 4 8 8 H 1.09006 * 109.46758 * 19.72168 * 7 6 5 9 9 C 1.52999 * 109.47232 * 259.71821 * 7 6 5 10 10 O 1.42894 * 109.46971 * 304.41895 * 9 7 6 11 11 C 1.42902 * 113.99888 * 180.02562 * 10 9 7 12 12 N 1.46905 * 109.47192 * 139.71516 * 7 6 5 13 13 C 1.46904 * 110.99845 * 273.08966 * 12 7 6 14 14 H 1.09001 * 109.47311 * 33.13035 * 13 12 7 15 15 C 1.52999 * 109.47146 * 273.12492 * 13 12 7 16 16 C 1.50699 * 109.46815 * 153.12559 * 13 12 7 17 17 H 1.08002 * 120.00272 * 0.02562 * 16 13 12 18 18 C 1.37879 * 120.00065 * 180.27510 * 16 13 12 19 19 N 1.31513 * 119.99675 * 359.72492 * 18 16 13 20 20 Si 1.86799 * 120.00169 * 179.72935 * 18 16 13 21 21 H 1.48500 * 109.47513 * 89.99820 * 20 18 16 22 22 H 1.48499 * 109.47089 * 209.99820 * 20 18 16 23 23 H 1.48501 * 109.47080 * 329.99759 * 20 18 16 24 24 O 1.34301 * 125.79228 * 269.97725 * 3 2 1 25 25 H 1.08997 * 109.47473 * 60.00182 * 1 2 3 26 26 H 1.09004 * 109.47293 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46995 * 299.99987 * 1 2 3 28 28 H 1.08992 * 109.47044 * 239.99786 * 2 1 3 29 29 H 1.09003 * 109.46819 * 120.00010 * 2 1 3 30 30 H 1.07998 * 126.58560 * 0.02562 * 4 3 2 31 31 H 1.08003 * 126.57852 * 180.23690 * 5 4 3 32 32 H 1.08997 * 109.46757 * 64.42247 * 9 7 6 33 33 H 1.09000 * 109.46780 * 184.41759 * 9 7 6 34 34 H 1.08997 * 109.47405 * 180.02562 * 11 10 9 35 35 H 1.09009 * 109.46929 * 300.00011 * 11 10 9 36 36 H 1.08994 * 109.47270 * 59.99913 * 11 10 9 37 37 H 1.00891 * 111.00043 * 149.13659 * 12 7 6 38 38 H 1.09008 * 109.46775 * 60.26859 * 15 13 12 39 39 H 1.08999 * 109.47055 * 180.26036 * 15 13 12 40 40 H 1.08995 * 109.46958 * 300.26845 * 15 13 12 41 41 H 0.97001 * 119.99926 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2945 2.1625 1.0912 5 6 2.7458 3.4212 0.6320 6 6 2.7245 3.3763 -0.7121 7 6 3.1218 4.4972 -1.6378 8 1 3.7469 5.2092 -1.0989 9 6 1.8659 5.2058 -2.1491 10 8 0.9985 4.2522 -2.7656 11 6 -0.2105 4.8138 -3.2805 12 7 3.8726 3.9497 -2.7757 13 6 5.3036 3.8450 -2.4606 14 1 5.4269 3.6191 -1.4014 15 6 5.9953 5.1710 -2.7833 16 6 5.9199 2.7435 -3.2840 17 1 5.3097 2.1781 -3.9728 18 6 7.2617 2.4540 -3.1543 19 7 8.0049 3.1428 -2.3159 20 14 8.0240 1.0836 -4.1694 21 1 8.5220 1.6374 -5.4541 22 1 9.1548 0.4816 -3.4184 23 1 7.0011 0.0423 -4.4426 24 8 2.2945 2.1612 -1.0894 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 2.1858 1.8540 2.1205 31 1 3.0475 4.2589 1.2433 32 1 1.3503 5.6791 -1.3135 33 1 2.1485 5.9649 -2.8785 34 1 -0.8138 4.0260 -3.7315 35 1 -0.7695 5.2793 -2.4686 36 1 0.0294 5.5644 -4.0335 37 1 3.7248 4.5031 -3.6062 38 1 5.5527 5.9668 -2.1842 39 1 7.0579 5.0917 -2.5539 40 1 5.8680 5.3990 -3.8415 41 1 8.9489 2.9394 -2.2249 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173208408.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:41 Heat of formation + Delta-G solvation = -34.897138 kcal Electronic energy + Delta-G solvation = -21206.570979 eV Core-core repulsion = 18088.354046 eV Total energy + Delta-G solvation = -3118.216933 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.90856 -37.97761 -35.96463 -33.87259 -32.95566 -32.04527 -30.35377 -27.63985 -27.04266 -25.62708 -25.02582 -23.65710 -21.58949 -20.90890 -20.27398 -19.25388 -16.59218 -16.37933 -16.01367 -15.53817 -15.40995 -14.70656 -14.58688 -14.22855 -14.16340 -13.45236 -13.25046 -12.77432 -12.70579 -12.27579 -12.14797 -12.09964 -11.93972 -11.52165 -11.36481 -11.27427 -11.03730 -10.86375 -10.76703 -10.71527 -10.47321 -10.13107 -9.84551 -9.45977 -9.22448 -8.97617 -8.31338 -7.66664 -7.28383 -5.93435 -3.95334 2.39487 3.17037 3.36518 3.42525 3.48553 3.56478 3.98232 4.48585 4.95520 5.02351 5.15902 5.21844 5.33455 5.38542 5.40137 5.45340 5.49727 5.58765 5.63616 5.72175 5.74384 5.85779 5.90163 5.92181 6.02485 6.25515 6.37213 6.49933 6.64731 6.74073 6.81538 7.06985 7.09446 7.29322 7.40706 7.74353 7.88131 7.98685 8.29511 8.54872 8.62620 9.11770 9.69256 11.14019 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.014890 B = 0.006525 C = 0.005415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.945106 B = 4289.839678 C = 5169.982804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.041 4.041 3 C -0.025 4.025 4 C -0.214 4.214 5 C -0.237 4.237 6 C 0.048 3.952 7 C 0.161 3.839 8 H 0.081 0.919 9 C 0.063 3.937 10 O -0.363 6.363 11 C 0.031 3.969 12 N -0.666 5.666 13 C 0.210 3.790 14 H 0.035 0.965 15 C -0.170 4.170 16 C -0.488 4.488 17 H 0.063 0.937 18 C 0.054 3.946 19 N -0.899 5.899 20 Si 0.896 3.104 21 H -0.282 1.282 22 H -0.288 1.288 23 H -0.274 1.274 24 O -0.132 6.132 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.055 0.945 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.136 0.864 31 H 0.138 0.862 32 H 0.050 0.950 33 H 0.054 0.946 34 H 0.082 0.918 35 H 0.034 0.966 36 H 0.037 0.963 37 H 0.333 0.667 38 H 0.004 0.996 39 H 0.091 0.909 40 H 0.029 0.971 41 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.734 1.887 4.018 15.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.078 4.078 3 C -0.077 4.077 4 C -0.234 4.234 5 C -0.257 4.257 6 C -0.005 4.005 7 C 0.050 3.950 8 H 0.099 0.901 9 C -0.014 4.014 10 O -0.281 6.281 11 C -0.066 4.066 12 N -0.297 5.297 13 C 0.103 3.897 14 H 0.052 0.948 15 C -0.229 4.229 16 C -0.527 4.527 17 H 0.081 0.919 18 C -0.146 4.146 19 N -0.539 5.539 20 Si 0.725 3.275 21 H -0.209 1.209 22 H -0.214 1.214 23 H -0.199 1.199 24 O -0.026 6.026 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.099 0.901 29 H 0.104 0.896 30 H 0.154 0.846 31 H 0.155 0.845 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.101 0.899 35 H 0.052 0.948 36 H 0.056 0.944 37 H 0.151 0.849 38 H 0.023 0.977 39 H 0.109 0.891 40 H 0.048 0.952 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -14.669 0.930 3.915 15.211 hybrid contribution 0.848 0.701 -0.207 1.119 sum -13.821 1.631 3.708 14.403 Atomic orbital electron populations 1.21761 0.94561 1.01600 1.02421 1.19967 0.95795 0.88337 1.03701 1.22294 1.05314 0.95143 0.84926 1.21313 1.08570 0.94818 0.98663 1.21390 1.10764 0.99630 0.93927 1.22197 0.99800 0.85539 0.92918 1.20111 0.92685 0.89546 0.92637 0.90142 1.22784 0.91077 0.91278 0.96287 1.88130 1.30130 1.33295 1.76557 1.22704 0.87371 0.99193 0.97366 1.60685 1.12141 1.54379 1.02517 1.19278 0.80404 0.92924 0.97132 0.94758 1.22467 1.05559 0.97061 0.97837 1.21126 0.93156 1.15910 1.22529 0.91872 1.24935 0.97214 0.96697 0.95730 1.69879 1.06586 1.40733 1.36747 0.86518 0.78717 0.82360 0.79940 1.20866 1.21424 1.19865 1.84110 1.63267 1.21757 1.33432 0.92238 0.92210 0.92600 0.90134 0.89586 0.84572 0.84458 0.93166 0.92750 0.89922 0.94770 0.94428 0.84870 0.97741 0.89081 0.95164 0.93155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.89 37.16 0.37 -1.29 16 2 C -0.04 -0.56 6.47 -27.88 -0.18 -0.74 16 3 C -0.03 -0.46 6.58 -35.62 -0.23 -0.69 16 4 C -0.21 -3.67 10.81 -39.70 -0.43 -4.10 16 5 C -0.24 -4.33 10.80 -39.71 -0.43 -4.76 16 6 C 0.05 0.97 5.49 -35.63 -0.20 0.77 16 7 C 0.16 3.01 2.68 -68.86 -0.18 2.83 16 8 H 0.08 1.46 7.25 -51.93 -0.38 1.08 16 9 C 0.06 0.96 5.45 37.16 0.20 1.16 16 10 O -0.36 -6.01 10.04 -35.23 -0.35 -6.36 16 11 C 0.03 0.36 11.01 101.05 1.11 1.48 16 12 N -0.67 -14.62 5.97 -102.16 -0.61 -15.23 16 13 C 0.21 5.36 2.37 -68.86 -0.16 5.20 16 14 H 0.03 0.98 7.69 -51.93 -0.40 0.58 16 15 C -0.17 -4.04 8.93 37.16 0.33 -3.71 16 16 C -0.49 -13.91 8.84 -34.44 -0.30 -14.22 16 17 H 0.06 1.84 7.81 -52.49 -0.41 1.43 16 18 C 0.05 1.54 5.31 -17.82 -0.09 1.45 16 19 N -0.90 -26.19 11.33 55.43 0.63 -25.57 16 20 Si 0.90 22.12 29.54 -169.99 -5.02 17.10 16 21 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 24 O -0.13 -2.81 10.53 5.71 0.06 -2.75 16 25 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 29 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.14 1.94 8.06 -52.49 -0.42 1.52 16 31 H 0.14 2.19 8.06 -52.48 -0.42 1.76 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.05 0.73 8.04 -51.93 -0.42 0.31 16 34 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.03 0.35 8.14 -51.92 -0.42 -0.07 16 36 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.33 6.83 7.97 -39.30 -0.31 6.52 16 38 H 0.00 0.08 7.60 -51.92 -0.39 -0.32 16 39 H 0.09 2.42 6.07 -51.93 -0.32 2.11 16 40 H 0.03 0.68 8.12 -51.93 -0.42 0.26 16 41 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 341.59 15.07 5.15 5.15 Total: -1.00 -31.93 341.59 -7.18 -39.11 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -6.83 Total: 5.16 kcal Atomic # 6 Polarization: -16.42 SS G_CDS: -0.20 Total: -16.62 kcal Atomic # 7 Polarization: -40.81 SS G_CDS: 0.02 Total: -40.80 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: -0.29 Total: -9.11 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.93 -7.18 -39.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173208408.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.217 kcal (2) G-P(sol) polarization free energy of solvation -31.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds