Wall clock time and date at job start Mon Mar 30 2020 06:36:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.47133 * 2 1 4 4 C 1.34517 * 125.78705 * 89.99926 * 3 2 1 5 5 C 1.41383 * 106.83485 * 179.75087 * 4 3 2 6 6 C 1.34506 * 106.84732 * 0.37365 * 5 4 3 7 7 C 1.50700 * 125.79544 * 179.88637 * 6 5 4 8 8 H 1.09006 * 109.46758 * 19.72168 * 7 6 5 9 9 C 1.52999 * 109.47232 * 259.71821 * 7 6 5 10 10 O 1.42894 * 109.46971 * 304.41895 * 9 7 6 11 11 C 1.42902 * 113.99888 * 180.02562 * 10 9 7 12 12 N 1.46905 * 109.47192 * 139.71516 * 7 6 5 13 13 C 1.46904 * 110.99845 * 273.08966 * 12 7 6 14 14 H 1.09001 * 109.47311 * 33.13035 * 13 12 7 15 15 C 1.52999 * 109.47146 * 273.12492 * 13 12 7 16 16 C 1.50699 * 109.46815 * 153.12559 * 13 12 7 17 17 H 1.08002 * 120.00272 * 0.02562 * 16 13 12 18 18 C 1.37879 * 120.00065 * 180.27510 * 16 13 12 19 19 N 1.31513 * 119.99675 * 359.72492 * 18 16 13 20 20 Si 1.86799 * 120.00169 * 179.72935 * 18 16 13 21 21 H 1.48500 * 109.47513 * 89.99820 * 20 18 16 22 22 H 1.48499 * 109.47089 * 209.99820 * 20 18 16 23 23 H 1.48501 * 109.47080 * 329.99759 * 20 18 16 24 24 O 1.34301 * 125.79228 * 269.97725 * 3 2 1 25 25 H 1.08997 * 109.47473 * 60.00182 * 1 2 3 26 26 H 1.09004 * 109.47293 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46995 * 299.99987 * 1 2 3 28 28 H 1.08992 * 109.47044 * 239.99786 * 2 1 3 29 29 H 1.09003 * 109.46819 * 120.00010 * 2 1 3 30 30 H 1.07998 * 126.58560 * 0.02562 * 4 3 2 31 31 H 1.08003 * 126.57852 * 180.23690 * 5 4 3 32 32 H 1.08997 * 109.46757 * 64.42247 * 9 7 6 33 33 H 1.09000 * 109.46780 * 184.41759 * 9 7 6 34 34 H 1.08997 * 109.47405 * 180.02562 * 11 10 9 35 35 H 1.09009 * 109.46929 * 300.00011 * 11 10 9 36 36 H 1.08994 * 109.47270 * 59.99913 * 11 10 9 37 37 H 1.00891 * 111.00043 * 149.13659 * 12 7 6 38 38 H 1.09008 * 109.46775 * 60.26859 * 15 13 12 39 39 H 1.08999 * 109.47055 * 180.26036 * 15 13 12 40 40 H 1.08995 * 109.46958 * 300.26845 * 15 13 12 41 41 H 0.97001 * 119.99926 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2945 2.1625 1.0912 5 6 2.7458 3.4212 0.6320 6 6 2.7245 3.3763 -0.7121 7 6 3.1218 4.4972 -1.6378 8 1 3.7469 5.2092 -1.0989 9 6 1.8659 5.2058 -2.1491 10 8 0.9985 4.2522 -2.7656 11 6 -0.2105 4.8138 -3.2805 12 7 3.8726 3.9497 -2.7757 13 6 5.3036 3.8450 -2.4606 14 1 5.4269 3.6191 -1.4014 15 6 5.9953 5.1710 -2.7833 16 6 5.9199 2.7435 -3.2840 17 1 5.3097 2.1781 -3.9728 18 6 7.2617 2.4540 -3.1543 19 7 8.0049 3.1428 -2.3159 20 14 8.0240 1.0836 -4.1694 21 1 8.5220 1.6374 -5.4541 22 1 9.1548 0.4816 -3.4184 23 1 7.0011 0.0423 -4.4426 24 8 2.2945 2.1612 -1.0894 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 2.1858 1.8540 2.1205 31 1 3.0475 4.2589 1.2433 32 1 1.3503 5.6791 -1.3135 33 1 2.1485 5.9649 -2.8785 34 1 -0.8138 4.0260 -3.7315 35 1 -0.7695 5.2793 -2.4686 36 1 0.0294 5.5644 -4.0335 37 1 3.7248 4.5031 -3.6062 38 1 5.5527 5.9668 -2.1842 39 1 7.0579 5.0917 -2.5539 40 1 5.8680 5.3990 -3.8415 41 1 8.9489 2.9394 -2.2249 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173208408.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:41 Heat of formation + Delta-G solvation = -55.901285 kcal Electronic energy + Delta-G solvation = -21207.481787 eV Core-core repulsion = 18088.354046 eV Total energy + Delta-G solvation = -3119.127741 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.32023 -39.26190 -37.58515 -35.17182 -34.67552 -33.54744 -32.03516 -29.00846 -28.44451 -27.24157 -26.70752 -24.79160 -22.97405 -22.32562 -22.13101 -20.67369 -18.46941 -17.75082 -17.36245 -17.03725 -16.68886 -16.48514 -16.05935 -15.55425 -15.31564 -15.01626 -14.71025 -14.35374 -13.92102 -13.77067 -13.57522 -13.45610 -13.23866 -13.15403 -12.84320 -12.78293 -12.46809 -12.41759 -12.33496 -12.18048 -12.06836 -11.84404 -11.76487 -11.05615 -10.62811 -10.55314 -10.48468 -9.07087 -8.99991 -8.09977 -6.19848 0.99415 1.40044 1.41036 1.52379 1.80098 2.24377 2.43549 2.87698 3.18271 3.49461 3.74280 4.03047 4.04405 4.25426 4.27605 4.41895 4.44446 4.44742 4.52348 4.58377 4.63546 4.67428 4.73688 4.87445 4.87787 4.94432 4.97764 5.05175 5.07621 5.20836 5.29916 5.38561 5.44103 5.69540 5.78503 5.83350 6.25415 6.32764 6.49266 6.68524 6.80852 6.93937 7.49349 8.95571 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.014890 B = 0.006525 C = 0.005415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.945106 B = 4289.839678 C = 5169.982804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.043 4.043 3 C -0.040 4.040 4 C -0.220 4.220 5 C -0.243 4.243 6 C 0.017 3.983 7 C 0.158 3.842 8 H 0.084 0.916 9 C 0.070 3.930 10 O -0.398 6.398 11 C 0.026 3.974 12 N -0.674 5.674 13 C 0.221 3.779 14 H -0.004 1.004 15 C -0.156 4.156 16 C -0.511 4.511 17 H 0.048 0.952 18 C 0.010 3.990 19 N -0.921 5.921 20 Si 0.956 3.044 21 H -0.271 1.271 22 H -0.283 1.283 23 H -0.276 1.276 24 O -0.166 6.166 25 H 0.042 0.958 26 H 0.086 0.914 27 H 0.063 0.937 28 H 0.070 0.930 29 H 0.110 0.890 30 H 0.166 0.834 31 H 0.156 0.844 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.088 0.912 35 H 0.049 0.951 36 H 0.052 0.948 37 H 0.339 0.661 38 H 0.032 0.968 39 H 0.062 0.938 40 H 0.036 0.964 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.807 1.848 4.313 16.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.080 4.080 3 C -0.091 4.091 4 C -0.239 4.239 5 C -0.263 4.263 6 C -0.035 4.035 7 C 0.047 3.953 8 H 0.101 0.899 9 C -0.007 4.007 10 O -0.317 6.317 11 C -0.070 4.070 12 N -0.306 5.306 13 C 0.112 3.888 14 H 0.014 0.986 15 C -0.216 4.216 16 C -0.550 4.550 17 H 0.066 0.934 18 C -0.188 4.188 19 N -0.562 5.562 20 Si 0.782 3.218 21 H -0.197 1.197 22 H -0.208 1.208 23 H -0.201 1.201 24 O -0.061 6.061 25 H 0.061 0.939 26 H 0.104 0.896 27 H 0.082 0.918 28 H 0.089 0.911 29 H 0.128 0.872 30 H 0.183 0.817 31 H 0.174 0.826 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.107 0.893 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.159 0.841 38 H 0.050 0.950 39 H 0.081 0.919 40 H 0.055 0.945 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -15.762 0.908 4.208 16.339 hybrid contribution 1.117 0.698 -0.251 1.341 sum -14.644 1.606 3.957 15.254 Atomic orbital electron populations 1.21710 0.92644 1.03202 1.01974 1.20197 0.97405 0.86026 1.04368 1.23177 1.04857 0.96578 0.84495 1.21694 1.08031 0.94253 0.99920 1.21770 1.10065 1.00750 0.93678 1.22532 1.01226 0.85831 0.93919 1.20243 0.93981 0.89615 0.91417 0.89886 1.22734 0.89728 0.90744 0.97502 1.88078 1.31759 1.34843 1.77058 1.22890 0.86021 0.99842 0.98244 1.60465 1.10215 1.55797 1.04118 1.18945 0.82677 0.92947 0.94189 0.98564 1.22248 1.03556 0.97113 0.98660 1.21399 0.93638 1.17055 1.22902 0.93419 1.25664 0.97614 0.98795 0.96732 1.69998 1.06781 1.41770 1.37619 0.85580 0.77747 0.79561 0.78877 1.19685 1.20817 1.20072 1.84073 1.64130 1.22621 1.35276 0.93850 0.89558 0.91839 0.91101 0.87202 0.81680 0.82623 0.90976 0.90877 0.89347 0.93200 0.92951 0.84148 0.94954 0.91940 0.94524 0.93023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 9.89 71.98 0.71 -2.19 16 2 C -0.04 -1.13 6.47 29.85 0.19 -0.93 16 3 C -0.04 -1.44 6.58 24.83 0.16 -1.27 16 4 C -0.22 -7.32 10.81 22.19 0.24 -7.08 16 5 C -0.24 -8.77 10.80 22.19 0.24 -8.53 16 6 C 0.02 0.69 5.49 24.83 0.14 0.82 16 7 C 0.16 5.89 2.68 44.17 0.12 6.01 16 8 H 0.08 2.99 7.25 -2.38 -0.02 2.97 16 9 C 0.07 2.02 5.45 71.98 0.39 2.42 16 10 O -0.40 -12.87 10.04 -148.98 -1.50 -14.36 16 11 C 0.03 0.58 11.01 113.37 1.25 1.82 16 12 N -0.67 -29.98 5.97 -477.14 -2.85 -32.83 16 13 C 0.22 11.51 2.37 44.17 0.10 11.62 16 14 H 0.00 -0.21 7.69 -2.39 -0.02 -0.23 16 15 C -0.16 -7.45 8.93 71.98 0.64 -6.81 16 16 C -0.51 -29.75 8.84 25.60 0.23 -29.53 16 17 H 0.05 2.85 7.81 -2.91 -0.02 2.83 16 18 C 0.01 0.57 5.31 84.66 0.45 1.02 16 19 N -0.92 -54.37 11.33 21.45 0.24 -54.13 16 20 Si 0.96 45.70 29.54 68.60 2.03 47.72 16 21 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 22 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 23 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 24 O -0.17 -7.20 10.53 -2.47 -0.03 -7.22 16 25 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 28 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 30 H 0.17 4.34 8.06 -2.91 -0.02 4.31 16 31 H 0.16 4.81 8.06 -2.91 -0.02 4.79 16 32 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.07 1.81 8.04 -2.39 -0.02 1.79 16 34 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 36 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.34 13.93 7.97 -89.70 -0.71 13.22 16 38 H 0.03 1.31 7.60 -2.38 -0.02 1.29 16 39 H 0.06 3.35 6.07 -2.39 -0.01 3.34 16 40 H 0.04 1.65 8.12 -2.39 -0.02 1.63 16 41 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 Total: -1.00 -70.12 341.59 3.05 -67.07 By element: Atomic # 1 Polarization: 26.10 SS G_CDS: 0.28 Total: 26.39 kcal Atomic # 6 Polarization: -37.51 SS G_CDS: 4.87 Total: -32.64 kcal Atomic # 7 Polarization: -84.35 SS G_CDS: -2.61 Total: -86.95 kcal Atomic # 8 Polarization: -20.06 SS G_CDS: -1.52 Total: -21.58 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.72 kcal Total: -70.12 3.05 -67.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173208408.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.168 kcal (2) G-P(sol) polarization free energy of solvation -70.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds