Wall clock time and date at job start Mon Mar 30 2020 07:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86790 * 120.00328 * 2 1 4 4 H 1.48505 * 109.47115 * 239.72643 * 3 2 1 5 5 H 1.48502 * 109.47304 * 359.72519 * 3 2 1 6 6 H 1.48498 * 109.47460 * 119.72653 * 3 2 1 7 7 C 1.37876 * 119.99416 * 179.72389 * 2 1 3 8 8 H 1.08000 * 119.99734 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00265 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47395 * 179.97438 * 9 7 2 11 11 N 1.46897 * 109.47414 * 172.55150 * 10 9 7 12 12 C 1.46903 * 110.99924 * 194.81269 * 11 10 9 13 13 C 1.52994 * 109.46983 * 164.24655 * 12 11 10 14 14 H 1.09000 * 109.82459 * 310.63851 * 13 12 11 15 15 C 1.54383 * 109.83303 * 189.74879 * 13 12 11 16 16 C 1.55449 * 102.19032 * 219.18466 * 15 13 12 17 17 C 1.54943 * 100.98656 * 34.03605 * 16 15 13 18 18 O 1.43242 * 109.83021 * 71.52437 * 13 12 11 19 19 C 1.46902 * 110.99833 * 70.85780 * 11 10 9 20 20 C 1.54270 * 110.03268 * 45.11843 * 19 11 10 21 21 C 1.54890 * 104.19526 * 217.10117 * 20 19 11 22 22 C 1.54888 * 102.74366 * 37.94307 * 21 20 19 23 23 C 1.53870 * 110.03418 * 287.95119 * 19 11 10 24 24 H 0.97001 * 120.00098 * 0.27361 * 1 2 3 25 25 H 1.09003 * 109.47408 * 299.99527 * 9 7 2 26 26 H 1.09000 * 109.47816 * 59.99682 * 9 7 2 27 27 H 1.09005 * 109.46873 * 292.55247 * 10 9 7 28 28 H 1.08997 * 109.47205 * 52.54715 * 10 9 7 29 29 H 1.09000 * 109.47268 * 284.24857 * 12 11 10 30 30 H 1.08995 * 109.47046 * 44.24704 * 12 11 10 31 31 H 1.09004 * 110.84579 * 337.32734 * 15 13 12 32 32 H 1.08999 * 110.84663 * 100.94043 * 15 13 12 33 33 H 1.09004 * 111.05571 * 276.12695 * 16 15 13 34 34 H 1.08999 * 111.18560 * 152.00535 * 16 15 13 35 35 H 1.09003 * 110.30786 * 204.68904 * 17 16 15 36 36 H 1.09007 * 110.39346 * 82.56983 * 17 16 15 37 37 H 1.08999 * 110.01498 * 166.55787 * 19 11 10 38 38 H 1.09007 * 110.48334 * 335.78353 * 20 19 11 39 39 H 1.09001 * 110.48801 * 98.42548 * 20 19 11 40 40 H 1.08998 * 110.75586 * 279.62868 * 21 20 19 41 41 H 1.09003 * 110.75177 * 156.25175 * 21 20 19 42 42 H 1.09009 * 110.48290 * 203.37754 * 22 21 20 43 43 H 1.08998 * 110.48971 * 80.73623 * 22 21 20 44 44 H 1.09003 * 110.02773 * 238.57188 * 23 19 11 45 45 H 1.09004 * 110.03312 * 359.94705 * 23 19 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1080 1.6933 -1.2092 5 1 1.2843 2.7464 -0.0067 6 1 3.0979 1.6992 1.2158 7 6 2.0044 -1.1941 0.0058 8 1 3.0844 -1.1942 0.0053 9 6 1.2508 -2.4991 0.0115 10 6 2.2450 -3.6622 0.0165 11 7 1.5193 -4.9259 0.2016 12 6 2.4392 -6.0134 0.5611 13 6 1.6410 -7.1919 1.1222 14 1 0.9500 -6.8393 1.8878 15 6 2.6040 -8.2362 1.7267 16 6 1.9453 -9.5773 1.2976 17 6 1.3573 -9.1892 -0.0824 18 8 0.9127 -7.8315 0.0676 19 6 0.7431 -5.2677 -0.9978 20 6 1.6025 -5.0565 -2.2614 21 6 0.6057 -4.5051 -3.3109 22 6 -0.3022 -3.5777 -2.4656 23 6 -0.4679 -4.3274 -1.1277 24 1 -0.4850 0.8400 -0.0040 25 1 0.6239 -2.5528 0.9015 26 1 0.6244 -2.5610 -0.8784 27 1 2.7807 -3.6864 -0.9325 28 1 2.9561 -3.5287 0.8318 29 1 2.9864 -6.3343 -0.3253 30 1 3.1431 -5.6598 1.3144 31 1 3.6011 -8.1390 1.2970 32 1 2.6383 -8.1494 2.8127 33 1 1.1573 -9.8667 1.9929 34 1 2.6892 -10.3679 1.1993 35 1 0.5169 -9.8372 -0.3314 36 1 2.1248 -9.2529 -0.8538 37 1 0.4075 -6.3033 -0.9425 38 1 2.3932 -4.3314 -2.0682 39 1 2.0256 -6.0031 -2.5977 40 1 0.0253 -5.3139 -3.7548 41 1 1.1294 -3.9368 -4.0797 42 1 -1.2692 -3.4450 -2.9509 43 1 0.1807 -2.6137 -2.3054 44 1 -1.3912 -4.9068 -1.1362 45 1 -0.4803 -3.6180 -0.3002 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173835983.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:14 Heat of formation + Delta-G solvation = -33.085977 kcal Electronic energy + Delta-G solvation = -22046.823888 eV Core-core repulsion = 19064.518588 eV Total energy + Delta-G solvation = -2982.305301 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.82170 -38.55602 -34.47261 -33.06628 -32.18195 -30.68380 -29.07464 -28.10835 -26.70119 -25.02448 -23.25495 -21.71868 -21.05514 -20.43248 -19.93874 -18.51565 -16.92540 -16.35797 -16.08088 -15.54607 -14.88449 -14.52448 -14.32507 -14.01844 -13.58528 -13.35568 -13.15161 -12.71341 -12.22606 -12.06593 -11.93568 -11.78166 -11.50254 -11.29595 -11.10643 -10.92477 -10.84876 -10.82531 -10.53868 -10.45719 -10.28443 -10.18288 -9.81316 -9.67919 -9.47683 -9.43067 -9.07014 -8.64207 -8.16859 -7.44335 -5.90706 -3.91127 3.37314 3.42016 3.44192 3.84907 4.41131 4.45159 4.57918 4.75410 4.95342 5.17101 5.23065 5.30987 5.35313 5.45008 5.53136 5.57689 5.58210 5.64645 5.68297 5.75101 5.88763 5.94514 6.07287 6.19079 6.20241 6.25534 6.32224 6.38214 6.42876 6.51630 6.57267 6.63066 6.79013 7.07503 7.11132 7.15021 7.18444 7.26608 7.71916 7.84450 7.94991 8.14232 8.24347 8.56499 9.15737 9.70659 11.20093 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.025413 B = 0.005126 C = 0.004585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.518476 B = 5460.598015 C = 6105.827979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.886 3.114 4 H -0.279 1.279 5 H -0.288 1.288 6 H -0.279 1.279 7 C -0.519 4.519 8 H 0.049 0.951 9 C 0.003 3.997 10 C 0.050 3.950 11 N -0.528 5.528 12 C 0.044 3.956 13 C 0.086 3.914 14 H 0.089 0.911 15 C -0.150 4.150 16 C -0.155 4.155 17 C 0.046 3.954 18 O -0.369 6.369 19 C 0.080 3.920 20 C -0.167 4.167 21 C -0.117 4.117 22 C -0.130 4.130 23 C -0.128 4.128 24 H 0.259 0.741 25 H 0.021 0.979 26 H 0.058 0.942 27 H 0.033 0.967 28 H 0.052 0.948 29 H 0.032 0.968 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.054 0.946 37 H 0.101 0.899 38 H 0.084 0.916 39 H 0.048 0.952 40 H 0.054 0.946 41 H 0.056 0.944 42 H 0.051 0.949 43 H 0.091 0.909 44 H 0.046 0.954 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.049 -17.653 -0.662 17.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.141 4.141 3 Si 0.715 3.285 4 H -0.205 1.205 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.558 4.558 8 H 0.067 0.933 9 C -0.034 4.034 10 C -0.076 4.076 11 N -0.251 5.251 12 C -0.085 4.085 13 C 0.028 3.972 14 H 0.107 0.893 15 C -0.188 4.188 16 C -0.193 4.193 17 C -0.030 4.030 18 O -0.289 6.289 19 C -0.029 4.029 20 C -0.205 4.205 21 C -0.155 4.155 22 C -0.167 4.167 23 C -0.166 4.166 24 H 0.069 0.931 25 H 0.039 0.961 26 H 0.075 0.925 27 H 0.051 0.949 28 H 0.070 0.930 29 H 0.050 0.950 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.100 0.900 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.073 0.927 37 H 0.118 0.882 38 H 0.102 0.898 39 H 0.067 0.933 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.070 0.930 43 H 0.110 0.890 44 H 0.065 0.935 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 2.408 -17.365 -0.368 17.535 hybrid contribution 1.357 0.728 -0.528 1.628 sum 3.765 -16.637 -0.895 17.081 Atomic orbital electron populations 1.69950 1.05820 1.26416 1.51009 1.24927 0.94773 0.98791 0.95627 0.86755 0.79646 0.83675 0.78450 1.20455 1.21376 1.20437 1.21230 0.92776 0.91407 1.50402 0.93319 1.19760 0.94633 0.89550 0.99449 1.22587 0.97461 0.89165 0.98420 1.62400 1.25264 1.02352 1.35065 1.22461 0.94445 0.92199 0.99349 1.22864 0.93101 0.91847 0.89379 0.89342 1.23174 0.99639 0.94126 1.01884 1.23258 1.00636 0.97799 0.97599 1.23348 0.98882 0.84530 0.96274 1.88478 1.61823 1.23572 1.55003 1.22559 0.93435 1.00231 0.86625 1.23189 0.99915 1.00325 0.97114 1.22353 0.97392 0.98482 0.97252 1.22576 0.98752 1.00112 0.95281 1.22532 0.95871 0.98780 0.99395 0.93111 0.96055 0.92466 0.94889 0.92956 0.95004 0.90600 0.90645 0.90018 0.90502 0.90372 0.90225 0.92748 0.88162 0.89780 0.93332 0.92688 0.92564 0.92973 0.89038 0.93521 0.87818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.56 13.29 55.43 0.74 -25.82 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.52 -14.65 9.10 -34.44 -0.31 -14.96 16 8 H 0.05 1.35 7.74 -52.49 -0.41 0.94 16 9 C 0.00 0.07 3.50 -27.88 -0.10 -0.03 16 10 C 0.05 1.07 4.62 -3.82 -0.02 1.05 16 11 N -0.53 -9.90 4.40 -225.31 -0.99 -10.89 16 12 C 0.04 0.68 4.58 -3.83 -0.02 0.66 16 13 C 0.09 1.14 3.65 -26.01 -0.09 1.05 16 14 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 15 C -0.15 -1.48 6.55 -24.71 -0.16 -1.64 16 16 C -0.16 -1.34 7.16 -24.40 -0.17 -1.51 16 17 C 0.05 0.48 7.78 38.18 0.30 0.78 16 18 O -0.37 -5.20 8.10 -35.23 -0.29 -5.49 16 19 C 0.08 1.44 2.79 -66.59 -0.19 1.26 16 20 C -0.17 -2.88 5.63 -25.07 -0.14 -3.02 16 21 C -0.12 -1.94 6.91 -24.74 -0.17 -2.11 16 22 C -0.13 -2.47 6.32 -25.08 -0.16 -2.63 16 23 C -0.13 -2.50 5.64 -25.62 -0.14 -2.65 16 24 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 25 H 0.02 0.60 7.71 -51.93 -0.40 0.20 16 26 H 0.06 1.47 2.55 -51.93 -0.13 1.34 16 27 H 0.03 0.71 4.97 -51.93 -0.26 0.45 16 28 H 0.05 1.12 7.74 -51.93 -0.40 0.72 16 29 H 0.03 0.49 7.58 -51.93 -0.39 0.09 16 30 H 0.08 1.11 7.73 -51.93 -0.40 0.71 16 31 H 0.07 0.71 7.85 -51.93 -0.41 0.30 16 32 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.10 1.79 4.86 -51.93 -0.25 1.54 16 38 H 0.08 1.59 4.76 -51.93 -0.25 1.35 16 39 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 42 H 0.05 0.92 8.14 -51.92 -0.42 0.49 16 43 H 0.09 2.06 6.00 -51.93 -0.31 1.74 16 44 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.10 2.37 4.89 -51.93 -0.25 2.11 16 LS Contribution 328.59 15.07 4.95 4.95 Total: -1.00 -29.66 328.59 -9.74 -39.40 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -7.65 Total: 3.22 kcal Atomic # 6 Polarization: -20.68 SS G_CDS: -1.48 Total: -22.15 kcal Atomic # 7 Polarization: -36.45 SS G_CDS: -0.25 Total: -36.71 kcal Atomic # 8 Polarization: -5.20 SS G_CDS: -0.29 Total: -5.49 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -29.66 -9.74 -39.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173835983.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.317 kcal (2) G-P(sol) polarization free energy of solvation -29.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds