Wall clock time and date at job start Mon Mar 30 2020 07:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86790 * 120.00328 * 2 1 4 4 H 1.48505 * 109.47115 * 239.72643 * 3 2 1 5 5 H 1.48502 * 109.47304 * 359.72519 * 3 2 1 6 6 H 1.48498 * 109.47460 * 119.72653 * 3 2 1 7 7 C 1.37876 * 119.99416 * 179.72389 * 2 1 3 8 8 H 1.08000 * 119.99734 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00265 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47395 * 179.97438 * 9 7 2 11 11 N 1.46897 * 109.47414 * 172.55150 * 10 9 7 12 12 C 1.46903 * 110.99924 * 194.81269 * 11 10 9 13 13 C 1.52994 * 109.46983 * 164.24655 * 12 11 10 14 14 H 1.09000 * 109.82459 * 310.63851 * 13 12 11 15 15 C 1.54383 * 109.83303 * 189.74879 * 13 12 11 16 16 C 1.55449 * 102.19032 * 219.18466 * 15 13 12 17 17 C 1.54943 * 100.98656 * 34.03605 * 16 15 13 18 18 O 1.43242 * 109.83021 * 71.52437 * 13 12 11 19 19 C 1.46902 * 110.99833 * 70.85780 * 11 10 9 20 20 C 1.54270 * 110.03268 * 45.11843 * 19 11 10 21 21 C 1.54890 * 104.19526 * 217.10117 * 20 19 11 22 22 C 1.54888 * 102.74366 * 37.94307 * 21 20 19 23 23 C 1.53870 * 110.03418 * 287.95119 * 19 11 10 24 24 H 0.97001 * 120.00098 * 0.27361 * 1 2 3 25 25 H 1.09003 * 109.47408 * 299.99527 * 9 7 2 26 26 H 1.09000 * 109.47816 * 59.99682 * 9 7 2 27 27 H 1.09005 * 109.46873 * 292.55247 * 10 9 7 28 28 H 1.08997 * 109.47205 * 52.54715 * 10 9 7 29 29 H 1.09000 * 109.47268 * 284.24857 * 12 11 10 30 30 H 1.08995 * 109.47046 * 44.24704 * 12 11 10 31 31 H 1.09004 * 110.84579 * 337.32734 * 15 13 12 32 32 H 1.08999 * 110.84663 * 100.94043 * 15 13 12 33 33 H 1.09004 * 111.05571 * 276.12695 * 16 15 13 34 34 H 1.08999 * 111.18560 * 152.00535 * 16 15 13 35 35 H 1.09003 * 110.30786 * 204.68904 * 17 16 15 36 36 H 1.09007 * 110.39346 * 82.56983 * 17 16 15 37 37 H 1.08999 * 110.01498 * 166.55787 * 19 11 10 38 38 H 1.09007 * 110.48334 * 335.78353 * 20 19 11 39 39 H 1.09001 * 110.48801 * 98.42548 * 20 19 11 40 40 H 1.08998 * 110.75586 * 279.62868 * 21 20 19 41 41 H 1.09003 * 110.75177 * 156.25175 * 21 20 19 42 42 H 1.09009 * 110.48290 * 203.37754 * 22 21 20 43 43 H 1.08998 * 110.48971 * 80.73623 * 22 21 20 44 44 H 1.09003 * 110.02773 * 238.57188 * 23 19 11 45 45 H 1.09004 * 110.03312 * 359.94705 * 23 19 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1080 1.6933 -1.2092 5 1 1.2843 2.7464 -0.0067 6 1 3.0979 1.6992 1.2158 7 6 2.0044 -1.1941 0.0058 8 1 3.0844 -1.1942 0.0053 9 6 1.2508 -2.4991 0.0115 10 6 2.2450 -3.6622 0.0165 11 7 1.5193 -4.9259 0.2016 12 6 2.4392 -6.0134 0.5611 13 6 1.6410 -7.1919 1.1222 14 1 0.9500 -6.8393 1.8878 15 6 2.6040 -8.2362 1.7267 16 6 1.9453 -9.5773 1.2976 17 6 1.3573 -9.1892 -0.0824 18 8 0.9127 -7.8315 0.0676 19 6 0.7431 -5.2677 -0.9978 20 6 1.6025 -5.0565 -2.2614 21 6 0.6057 -4.5051 -3.3109 22 6 -0.3022 -3.5777 -2.4656 23 6 -0.4679 -4.3274 -1.1277 24 1 -0.4850 0.8400 -0.0040 25 1 0.6239 -2.5528 0.9015 26 1 0.6244 -2.5610 -0.8784 27 1 2.7807 -3.6864 -0.9325 28 1 2.9561 -3.5287 0.8318 29 1 2.9864 -6.3343 -0.3253 30 1 3.1431 -5.6598 1.3144 31 1 3.6011 -8.1390 1.2970 32 1 2.6383 -8.1494 2.8127 33 1 1.1573 -9.8667 1.9929 34 1 2.6892 -10.3679 1.1993 35 1 0.5169 -9.8372 -0.3314 36 1 2.1248 -9.2529 -0.8538 37 1 0.4075 -6.3033 -0.9425 38 1 2.3932 -4.3314 -2.0682 39 1 2.0256 -6.0031 -2.5977 40 1 0.0253 -5.3139 -3.7548 41 1 1.1294 -3.9368 -4.0797 42 1 -1.2692 -3.4450 -2.9509 43 1 0.1807 -2.6137 -2.3054 44 1 -1.3912 -4.9068 -1.1362 45 1 -0.4803 -3.6180 -0.3002 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173835983.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:13 Heat of formation + Delta-G solvation = -50.604055 kcal Electronic energy + Delta-G solvation = -22047.583529 eV Core-core repulsion = 19064.518588 eV Total energy + Delta-G solvation = -2983.064942 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.04436 -39.79320 -35.94613 -35.13051 -33.05458 -32.28340 -30.51512 -29.61694 -28.11266 -26.72081 -24.71450 -22.79092 -22.36142 -21.75961 -21.43514 -20.07949 -18.46531 -17.82705 -17.23950 -16.95329 -16.48041 -16.27109 -15.49637 -15.37186 -14.99252 -14.49564 -14.31090 -14.22849 -13.99941 -13.60173 -13.47212 -13.02762 -12.78741 -12.73094 -12.60273 -12.42129 -12.19970 -12.03351 -11.93485 -11.84555 -11.68968 -11.65229 -11.48265 -11.32395 -11.15058 -11.02148 -10.66146 -10.33336 -10.30441 -8.93631 -8.11083 -6.19535 1.40216 1.42540 1.50133 2.43954 2.94116 3.14307 3.21649 3.67203 3.86304 3.88248 3.93936 4.02792 4.18846 4.27748 4.30800 4.46222 4.51564 4.56365 4.64366 4.71310 4.76441 4.80845 4.83888 4.90605 4.93872 4.95648 4.99923 5.06392 5.09904 5.12611 5.13521 5.23393 5.33951 5.36433 5.51927 5.52908 5.63040 5.66845 5.85296 6.06349 6.20162 6.31251 6.50758 6.54479 6.98274 7.46601 8.99628 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.025413 B = 0.005126 C = 0.004585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.518476 B = 5460.598015 C = 6105.827979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.007 3.993 3 Si 0.955 3.045 4 H -0.269 1.269 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.541 4.541 8 H 0.050 0.950 9 C 0.009 3.991 10 C 0.065 3.935 11 N -0.541 5.541 12 C 0.045 3.955 13 C 0.087 3.913 14 H 0.070 0.930 15 C -0.144 4.144 16 C -0.146 4.146 17 C 0.038 3.962 18 O -0.394 6.394 19 C 0.084 3.916 20 C -0.161 4.161 21 C -0.108 4.108 22 C -0.128 4.128 23 C -0.129 4.129 24 H 0.260 0.740 25 H -0.020 1.020 26 H 0.058 0.942 27 H 0.037 0.963 28 H 0.047 0.953 29 H 0.037 0.963 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.080 0.920 34 H 0.101 0.899 35 H 0.091 0.909 36 H 0.061 0.939 37 H 0.111 0.889 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.080 0.920 41 H 0.063 0.937 42 H 0.064 0.936 43 H 0.050 0.950 44 H 0.059 0.941 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.323 -19.453 -1.313 19.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.191 4.191 3 Si 0.780 3.220 4 H -0.194 1.194 5 H -0.209 1.209 6 H -0.196 1.196 7 C -0.580 4.580 8 H 0.068 0.932 9 C -0.027 4.027 10 C -0.062 4.062 11 N -0.264 5.264 12 C -0.083 4.083 13 C 0.029 3.971 14 H 0.088 0.912 15 C -0.182 4.182 16 C -0.183 4.183 17 C -0.038 4.038 18 O -0.315 6.315 19 C -0.024 4.024 20 C -0.200 4.200 21 C -0.145 4.145 22 C -0.165 4.165 23 C -0.167 4.167 24 H 0.069 0.931 25 H -0.002 1.002 26 H 0.075 0.925 27 H 0.055 0.945 28 H 0.065 0.935 29 H 0.055 0.945 30 H 0.098 0.902 31 H 0.102 0.898 32 H 0.111 0.889 33 H 0.099 0.901 34 H 0.120 0.880 35 H 0.109 0.891 36 H 0.079 0.921 37 H 0.129 0.871 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.099 0.901 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.068 0.932 44 H 0.078 0.922 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.695 -19.187 -1.017 19.566 hybrid contribution 0.897 1.238 -0.316 1.562 sum 4.592 -17.948 -1.333 18.574 Atomic orbital electron populations 1.70094 1.07439 1.27327 1.51793 1.25785 0.95638 1.02559 0.95117 0.85665 0.78409 0.79017 0.78903 1.19399 1.20916 1.19635 1.21662 0.93093 0.92889 1.50342 0.93182 1.19644 0.94867 0.90767 0.97468 1.22249 0.96168 0.89381 0.98415 1.62293 1.26038 1.02433 1.35648 1.22557 0.94292 0.91736 0.99692 1.22760 0.93263 0.92119 0.88916 0.91194 1.23153 0.99102 0.93535 1.02424 1.23246 1.01120 0.97576 0.96390 1.23581 0.99722 0.82947 0.97576 1.88408 1.62381 1.25566 1.55122 1.22546 0.92840 1.00068 0.86900 1.23108 0.99296 1.00791 0.96786 1.22334 0.96856 0.98559 0.96800 1.22461 0.99630 0.98613 0.95847 1.22481 0.97571 0.98444 0.98162 0.93077 1.00152 0.92477 0.94504 0.93452 0.94492 0.90164 0.89820 0.88887 0.90103 0.88015 0.89074 0.92105 0.87147 0.91726 0.91159 0.90107 0.91819 0.91764 0.93178 0.92191 0.91885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.99 13.29 21.45 0.28 -56.70 16 2 C 0.01 0.40 5.46 84.65 0.46 0.87 16 3 Si 0.95 45.26 29.54 68.60 2.03 47.28 16 4 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 5 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 6 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 7 C -0.54 -31.50 9.10 25.60 0.23 -31.27 16 8 H 0.05 2.82 7.74 -2.91 -0.02 2.80 16 9 C 0.01 0.50 3.50 29.85 0.10 0.60 16 10 C 0.06 2.86 4.62 86.31 0.40 3.26 16 11 N -0.54 -20.59 4.40 -866.76 -3.81 -24.40 16 12 C 0.05 1.36 4.58 86.30 0.40 1.75 16 13 C 0.09 2.23 3.65 31.06 0.11 2.34 16 14 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 15 C -0.14 -2.48 6.55 31.91 0.21 -2.28 16 16 C -0.15 -2.05 7.16 32.10 0.23 -1.82 16 17 C 0.04 0.68 7.78 72.65 0.57 1.24 16 18 O -0.39 -10.46 8.10 -148.98 -1.21 -11.67 16 19 C 0.08 3.03 2.79 45.64 0.13 3.16 16 20 C -0.16 -5.36 5.63 31.67 0.18 -5.18 16 21 C -0.11 -3.41 6.91 31.89 0.22 -3.19 16 22 C -0.13 -4.94 6.32 31.67 0.20 -4.74 16 23 C -0.13 -5.15 5.64 31.31 0.18 -4.98 16 24 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 25 H -0.02 -1.22 7.71 -2.39 -0.02 -1.24 16 26 H 0.06 3.10 2.55 -2.39 -0.01 3.10 16 27 H 0.04 1.61 4.97 -2.38 -0.01 1.60 16 28 H 0.05 2.09 7.74 -2.39 -0.02 2.07 16 29 H 0.04 1.07 7.58 -2.39 -0.02 1.05 16 30 H 0.08 2.29 7.73 -2.39 -0.02 2.27 16 31 H 0.08 1.33 7.85 -2.39 -0.02 1.31 16 32 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 34 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 37 H 0.11 3.81 4.86 -2.39 -0.01 3.80 16 38 H 0.06 2.42 4.76 -2.38 -0.01 2.41 16 39 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 41 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 42 H 0.06 2.26 8.14 -2.38 -0.02 2.24 16 43 H 0.05 2.36 6.00 -2.39 -0.01 2.34 16 44 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 45 H 0.06 3.06 4.89 -2.39 -0.01 3.05 16 Total: -1.00 -66.02 328.59 1.86 -64.16 By element: Atomic # 1 Polarization: 20.60 SS G_CDS: 0.96 Total: 21.55 kcal Atomic # 6 Polarization: -43.84 SS G_CDS: 3.61 Total: -40.23 kcal Atomic # 7 Polarization: -77.57 SS G_CDS: -3.53 Total: -81.10 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: -1.21 Total: -11.67 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.28 kcal Total: -66.02 1.86 -64.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173835983.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.552 kcal (2) G-P(sol) polarization free energy of solvation -66.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds